Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Forward (+)

18488802 .. 18492927

Gene Structure 4126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGATGCAACGTTACATCCCAACTCTTGTTATAATAAAACCCCAAAAAAATGAGATAGAATTAGGCAAAGCACGACCACACTTAAGAAAGTCACATGACCTGTTCCAAGTGAGCAGATCAGATGGTGAAGATCAGATCCCACCAAATCTCAAAGCACCAATAGCCTTAGGATCTGCCCCATATCCAACTTATGGTGCCGAACTTGCCTTTATTCATTTAAAACTGTATAAAAAAAAACCATTTCTCACCAGTCCAATTGATCCAGAAAAGCAAAATAACACATTCGAATTTCTCAAAACCCTCAAAACCCAAATGGCCAAAGAAGGTTTAGGGCTTGAAATTACAGAGTTGAGGTTGGGATTGTGTAGTGGTACAAGTTTAGTGGACAAAAACGAGAAGAAAAGGGCGTTTTCAAAGATTGACGGTGGAGATGTCAGGTATAGTACCACATCTGGTGACTACCCGAAAAATGGTCAGACAAAGAATGAGGTTGTGGGGTGGCCTCCATTGTGTTCATACAGAATGAAGATTAATAGCTTGAATGAGACGTCGAAAATGTATGTCAAAGTTAGCATGGACGGAGCACCCTTTCTTCGTAAAATTGACTTGAGCATGCACAACGAGTATGCAGATCTTGCTCTGGCGTTGGAGAAGTTGTTTGGTTGTTATGGCATCGGCGAGGTGTTGAAGGATGCAGACAACTGTGAATTTGCACCCATTTATGAAGACAAAGATGGAGACTGGATGCTAGTGGGAGACGTTCCTTGGGAGATGTTTGTTGAGTCATGCAAGAGGCTGAGGATCATGAAGAGATCGGATGCCAAGGGATTTGGACTGCAGCACAAGGGCTTCCGTAAGGCAACAATAGAAGAGGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

294

Amino Acids

33.18

Weight (kDa)

8.6

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AatII	GACGTC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	191
AclI	AACGTT	1 cut(s)	10
AclWI	GGATC	4 cut(s)	130, 178, 254, 809
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	287, 707
AcyI	GRCGYC	1 cut(s)	548
AfaI	GTAC	2 cut(s)	373, 445
AfiI	CCNNNNNNNGG	2 cut(s)	191, 470
AflII	CTTAAG	1 cut(s)	82
AgsI	TTSAA	4 cut(s)	338, 414, 541, 688
AluBI	AGCT	1 cut(s)	537
AluI	AGCT	1 cut(s)	537
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	3 cut(s)	539, 732, 750
AlwI	GGATC	4 cut(s)	130, 178, 254, 809
AoxI	GGCC	2 cut(s)	315, 500
ApeKI	GCWGC	1 cut(s)	838
ApoI	RAATTY	2 cut(s)	287, 707
AseI	ATTAAT	1 cut(s)	531
AsuHPI	GGTGA	3 cut(s)	137, 238, 467
AsuII	TTCGAA	1 cut(s)	285
AxyI	CCTNAGG	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	586
BbvCI	CCTCAGC	1 cut(s)	797
BbvI	GCAGC	1 cut(s)	850
BccI	CCATC	2 cut(s)	116, 728
BcoDI	GTCTC	3 cut(s)	539, 732, 750
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	1 cut(s)	836
BfrI	CTTAAG	1 cut(s)	82
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	1 cut(s)	839
BlsI	GCNGC	1 cut(s)	840
BmiI	GGNNCC	2 cut(s)	196, 876
BmsI	GCATC	4 cut(s)	681, 682, 735, 808
BpiI	GAAGAC	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	797
Bpu14I	TTCGAA	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	628
BsaHI	GRCGYC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	764, 822
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 470
Bse1I	ACTGG	2 cut(s)	249, 746
Bse21I	CCTNAGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	764, 822
BseGI	GGATG	4 cut(s)	15, 697, 750, 823
BseLI	CCNNNNNNNGG	2 cut(s)	191, 470
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	2 cut(s)	249, 746
BseXI	GCAGC	1 cut(s)	850
BshFI	GGCC	2 cut(s)	317, 502
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	586
BslI	CCNNNNNNNGG	2 cut(s)	191, 470
BsmAI	GTCTC	3 cut(s)	539, 732, 750
BsmBI	CGTCTC	2 cut(s)	539, 750
BsnI	GGCC	2 cut(s)	317, 502
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	8 cut(s)	116, 130, 135, 170, 259, 631, 801, 812
BspANI	GGCC	2 cut(s)	317, 502
BspCNI	CTCAG	1 cut(s)	789
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	2 cut(s)	196, 876
BspMAI	CTGCAG	1 cut(s)	840
BspPI	GGATC	4 cut(s)	130, 178, 254, 809
BspT104I	TTCGAA	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	249, 746
BssECI	CCNNGG	2 cut(s)	764, 822
BssMI	GATC	8 cut(s)	116, 130, 135, 170, 259, 631, 801, 812
BssNI	GRCGYC	1 cut(s)	548
BssT1I	CCWWGG	2 cut(s)	764, 822
Bst4CI	ACNGT	3 cut(s)	225, 425, 704
Bst6I	CTCTTC	2 cut(s)	803, 864
BstACI	GRCGYC	1 cut(s)	548
BstAFI	CTTAAG	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	2 cut(s)	166, 797
BstF5I	GGATG	4 cut(s)	15, 697, 750, 823
BstKTI	GATC	8 cut(s)	119, 133, 138, 173, 262, 634, 804, 815
BstMAI	GTCTC	3 cut(s)	539, 732, 750
BstMBI	GATC	8 cut(s)	116, 130, 135, 170, 259, 631, 801, 812
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 203, 635
BstNSI	RCATGY	1 cut(s)	616
BstSFI	CTRYAG	1 cut(s)	836
BstV1I	GCAGC	1 cut(s)	850
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	3 cut(s)	135, 170, 631
BstYI	RGATCY	3 cut(s)	135, 170, 631
Bsu36I	CCTNAGG	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	317, 502
BtsCI	GGATG	4 cut(s)	15, 697, 750, 823
Cac8I	GCNNGC	1 cut(s)	614
CciI	TCATGA	1 cut(s)	804
Csp6I	GTAC	2 cut(s)	372, 444
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	5 cut(s)	95, 574, 613, 786, 805
CviJI	RGCY	8 cut(s)	164, 317, 334, 502, 537, 796, 849, 877
CviKI_1	RGCY	8 cut(s)	164, 317, 334, 502, 537, 796, 849, 877
CviQI	GTAC	2 cut(s)	372, 444
DdeI	CTNAG	2 cut(s)	166, 797
DpnI	GATC	8 cut(s)	118, 132, 137, 172, 261, 633, 803, 814
DpnII	GATC	8 cut(s)	116, 130, 135, 170, 259, 631, 801, 812
DraI	TTTAAA	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	803, 864
EarI	CTCTTC	2 cut(s)	803, 864
Eco130I	CCWWGG	2 cut(s)	764, 822
Eco81I	CCTNAGG	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	764, 822
ErhI	CCWWGG	2 cut(s)	764, 822
Esp3I	CGTCTC	2 cut(s)	539, 750
FaeI	CATG	5 cut(s)	98, 577, 616, 789, 808
FatI	CATG	5 cut(s)	94, 573, 612, 785, 804
Fnu4HI	GCNGC	1 cut(s)	839
FokI	GGATG	4 cut(s)	2, 704, 757, 830
Fsp4HI	GCNGC	1 cut(s)	839
FspBI	CTAG	1 cut(s)	749
GluI	GCNGC	1 cut(s)	839
HaeIII	GGCC	2 cut(s)	317, 502
Hin1I	GRCGYC	1 cut(s)	548
Hin1II	CATG	5 cut(s)	98, 577, 616, 789, 808
HinfI	GANTC	1 cut(s)	782
HphI	GGTGA	3 cut(s)	137, 238, 467
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	4 cut(s)	121, 135, 477, 817
Hpy188III	TCNNGA	2 cut(s)	263, 805
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	2 cut(s)	317, 682
HpyCH4III	ACNGT	3 cut(s)	225, 425, 704
HpyCH4IV	ACGT	3 cut(s)	10, 548, 759
HpyCH4V	TGCA	7 cut(s)	7, 616, 629, 695, 713, 789, 838
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 203, 635
HpyF3I	CTNAG	2 cut(s)	166, 797
HpySE526I	ACGT	3 cut(s)	10, 548, 759
Hsp92I	GRCGYC	1 cut(s)	548
Hsp92II	CATG	5 cut(s)	98, 577, 616, 789, 808
Kzo9I	GATC	8 cut(s)	116, 130, 135, 170, 259, 631, 801, 812
LmnI	GCTCC	2 cut(s)	581, 874
LpnPI	CCDG	7 cut(s)	113, 262, 276, 421, 438, 626, 727
Lsp1109I	GCAGC	1 cut(s)	850
LweI	GCATC	4 cut(s)	681, 682, 735, 808
MaeI	CTAG	1 cut(s)	749
MaeII	ACGT	3 cut(s)	10, 548, 759
MaeIII	GTNAC	3 cut(s)	11, 90, 455
MalI	GATC	8 cut(s)	118, 132, 137, 172, 261, 633, 803, 814
MboI	GATC	8 cut(s)	116, 130, 135, 170, 259, 631, 801, 812
MboII	GAAGA	7 cut(s)	140, 409, 538, 584, 737, 820, 881
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	3 cut(s)	135, 170, 631
MhlI	GDGCHC	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	6 cut(s)	59, 255, 287, 339, 600, 707
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	791
MmeI	TCCRAC	2 cut(s)	209, 627
MnlI	CCTC	8 cut(s)	311, 345, 481, 513, 673, 786, 792, 865
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	3 cut(s)	83, 218, 531
Msp20I	TGGCCA	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	82
MunI	CAATTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	161, 203, 635
NdeII	GATC	8 cut(s)	116, 130, 135, 170, 259, 631, 801, 812
NlaIII	CATG	5 cut(s)	98, 577, 616, 789, 808
NlaIV	GGNNCC	2 cut(s)	196, 876
NmuCI	GTSAC	2 cut(s)	90, 455
NspI	RCATGY	1 cut(s)	616
NspV	TTCGAA	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	616
PagI	TCATGA	1 cut(s)	804
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	840
PleI	GAGTC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	790
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	10
PspN4I	GGNNCC	2 cut(s)	196, 876
PstI	CTGCAG	1 cut(s)	840
PsuI	RGATCY	3 cut(s)	135, 170, 631
RsaI	GTAC	2 cut(s)	373, 445
RsaNI	GTAC	2 cut(s)	372, 444
SaqAI	TTAA	3 cut(s)	83, 218, 531
SatI	GCNGC	1 cut(s)	839
Sau3AI	GATC	8 cut(s)	116, 130, 135, 170, 259, 631, 801, 812
SchI	GAGTC	1 cut(s)	791
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	681, 682, 735, 808
SfcI	CTRYAG	1 cut(s)	836
SfuI	TTCGAA	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	82, 607
SmoI	CTYRAG	2 cut(s)	82, 607
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	6 cut(s)	59, 255, 287, 339, 600, 707
SspMI	CTAG	1 cut(s)	749
StyI	CCWWGG	2 cut(s)	764, 822
TaaI	ACNGT	3 cut(s)	225, 425, 704
TaiI	ACGT	3 cut(s)	13, 551, 762
TaqI	TCGA	2 cut(s)	285, 551
TasI	AATT	6 cut(s)	59, 255, 287, 339, 600, 707
Tru1I	TTAA	3 cut(s)	83, 218, 531
Tru9I	TTAA	3 cut(s)	83, 218, 531
TseFI	GTSAC	2 cut(s)	90, 455
TseI	GCWGC	1 cut(s)	838
Tsp45I	GTSAC	2 cut(s)	90, 455
TspDTI	ATGAA	5 cut(s)	203, 504, 539, 738, 821
TspGWI	ACGGA	2 cut(s)	594, 842
Van91I	CCANNNNNTGG	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	2 cut(s)	287, 707
XceI	RCATGY	1 cut(s)	616
XspI	CTAG	1 cut(s)	749
ZraI	GACGTC	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.