Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Forward (+)

23798955 .. 23803215

Gene Structure 4261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1198100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCAAAGAAGGTTTAGGGCTTGAAATTACAGAGCTGAGGTTGGGATTATGTAGTGGTCCAAGTTTAGTGGACAAAAACGAGAAGAAAAGGGCGTTTTCAAAGATTGACGGTGGAGATGGCAGGTATAGTACCACAGCTGGTGACTACCCGAAAAATGGTCAGACAAAGAATGAGGTTGTGGGGTGGCCTCCAGTGTGTTCATACAGAATGAAGATTAATAGCTTGAATGAGACGACAAAAATGTATGTCAAAGTTAGCATGGATGGAGCACCTTTTCTTCGTAAAATTGACTTGAGCATGCACAACGAGTATGCAGATCTTGCTCTGGCGTTGGAGAAGTTATTTGGTTATTATGGCATCGGCGAGGTGTTGAAGAATGCAGACAACTGTGAATTTGCACCCATTTATGAAGACAAAGATGGAGACTGGATGCTAGTGGGAGATGTTCCTTGGGAGATGTTTGTTGAGTCATGCAAGAGGCTGAGGATCATGAAGAGATCGGAAGCCAAGGGATTTGGACTGCAGCACAAGGAGGGCTTCCGTAAAGCAACAATGGAAGAGGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

191

Amino Acids

21.42

Weight (kDa)

5.84

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	44 - 173	5e-45	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	395
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	26, 102, 229, 376
AluBI	AGCT	3 cut(s)	37, 140, 225
AluI	AGCT	3 cut(s)	37, 140, 225
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	227, 420
AlwI	GGATC	1 cut(s)	497
AoxI	GGCC	2 cut(s)	3, 188
ApeKI	GCWGC	1 cut(s)	526
ApoI	RAATTY	1 cut(s)	395
AseI	ATTAAT	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	2 cut(s)	38, 485
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	113, 260, 416
BcoDI	GTCTC	2 cut(s)	227, 420
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	567
BmsI	GCATC	2 cut(s)	369, 423
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	2 cut(s)	38, 485
BpuEI	CTTGAG	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	452, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	194, 434
BseDI	CCNNGG	2 cut(s)	452, 510
BseGI	GGATG	2 cut(s)	271, 438
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	29, 476
BseNI	ACTGG	2 cut(s)	194, 434
BseXI	GCAGC	1 cut(s)	538
BshFI	GGCC	2 cut(s)	5, 190
BsiHKAI	GWGCWC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	227, 420
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	5, 190
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	319, 489, 500
BspANI	GGCC	2 cut(s)	5, 190
BspCNI	CTCAG	2 cut(s)	30, 477
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	567
BspMAI	CTGCAG	1 cut(s)	528
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	194, 434
BssECI	CCNNGG	2 cut(s)	452, 510
BssMI	GATC	3 cut(s)	319, 489, 500
BssT1I	CCWWGG	2 cut(s)	452, 510
Bst4CI	ACNGT	2 cut(s)	113, 392
Bst6I	CTCTTC	2 cut(s)	491, 555
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	38, 485
BstF5I	GGATG	2 cut(s)	271, 438
BstKTI	GATC	3 cut(s)	322, 492, 503
BstMAI	GTCTC	2 cut(s)	227, 420
BstMBI	GATC	3 cut(s)	319, 489, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	5, 190
BtsCI	GGATG	2 cut(s)	271, 438
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	302
CciI	TCATGA	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	4 cut(s)	262, 301, 474, 493
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	2 cut(s)	38, 485
DpnI	GATC	3 cut(s)	321, 491, 502
DpnII	GATC	3 cut(s)	319, 489, 500
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	491, 555
EarI	CTCTTC	2 cut(s)	491, 555
Eco130I	CCWWGG	2 cut(s)	452, 510
Eco47I	GGWCC	1 cut(s)	59
EcoT14I	CCWWGG	2 cut(s)	452, 510
ErhI	CCWWGG	2 cut(s)	452, 510
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	265, 304, 477, 496
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FatI	CATG	4 cut(s)	261, 300, 473, 492
Fnu4HI	GCNGC	1 cut(s)	527
FokI	GGATG	2 cut(s)	278, 445
Fsp4HI	GCNGC	1 cut(s)	527
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	1 cut(s)	527
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	5, 190
Hin1II	CATG	4 cut(s)	265, 304, 477, 496
HinfI	GANTC	1 cut(s)	470
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	165, 505
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	2 cut(s)	113, 392
HpyCH4V	TGCA	6 cut(s)	304, 317, 383, 401, 477, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	38, 485
Hsp92II	CATG	4 cut(s)	265, 304, 477, 496
Kzo9I	GATC	3 cut(s)	319, 489, 500
LmnI	GCTCC	2 cut(s)	269, 565
LpnPI	CCDG	5 cut(s)	109, 126, 207, 314, 415
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	2 cut(s)	369, 423
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	321, 491, 502
MboI	GATC	3 cut(s)	319, 489, 500
MboII	GAAGA	7 cut(s)	97, 226, 272, 388, 425, 508, 572
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	27, 288, 395
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	8 cut(s)	33, 169, 201, 361, 474, 480, 529, 556
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	3 cut(s)	319, 489, 500
NlaIII	CATG	4 cut(s)	265, 304, 477, 496
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	304
PaeI	GCATGC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	492
PctI	GAATGC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	528
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PshBI	ATTAAT	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	3 cut(s)	319, 489, 500
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	9 cut(s)	16, 39, 44, 128, 142, 180, 227, 277, 372
SfaNI	GCATC	2 cut(s)	369, 423
SfcI	CTRYAG	1 cut(s)	524
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	3 cut(s)	27, 288, 395
SspMI	CTAG	1 cut(s)	437
StyI	CCWWGG	2 cut(s)	452, 510
TaaI	ACNGT	2 cut(s)	113, 392
TasI	AATT	3 cut(s)	27, 288, 395
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	192, 227, 426, 509
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.