RchiOBHm_Chr2g0137321

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010876
Physical Location & Seq
Reverse (-)
54984104 .. 54984544
441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50809

Sequence Viewer

Length: 234 bp
ATGGCGAAAGAAGGTCTAGGGCTGGAAATTACCGAGCTGAGGTTAGGTCTCCCTAGTGGTCCAAGTTTAGTGGACAAAATCAAGGAGAAGAAGAGGGTATTTTCAGAGATTAATGGGGGGATGGCAACGGCGCCAACTCTGGTGACCGTGATGACTACCGGAAAGATCAAGCCAAGAGTCAAGTTGTGGGGTGGCCTCCGGTGTGTTCATATCGGAGGAAGGTTAACAGCTTGA

Protein Analysis

77

Amino Acids

8.23

Weight (kDa)

10.22

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15580 AT1G52830 AT3G15540
fragaria_vesca FvH4_6g30860
malus_domestica MD17G1198100.v1.1
prunus_persica Prupe.3G074800_v2.0.a1
pyrus_communis pycom09g13290 pycom17g20300
rosa_chinensis RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata RLG00000019650
rosa_multiflora Rmu_sc0010947.1_g000009
rosa_roxburghii Rroxscaffold_2G00107210
rosa_rugosa Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana Rw2G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 39
AluBI AGCT 2 cut(s) 37, 230
AluI AGCT 2 cut(s) 37, 230
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 193
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 17, 54
BfoI RGCGCY 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 53
BsaWI WCCGGW 2 cut(s) 158, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 29
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 130
BsiSI CCGG 2 cut(s) 159, 199
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 165
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 53
BssMI GATC 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 38
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 126
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 59
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviJI RGCY 5 cut(s) 22, 37, 172, 195, 230
CviKI_1 RGCY 5 cut(s) 22, 37, 172, 195, 230
DdeI CTNAG 1 cut(s) 38
DinI GGCGCC 1 cut(s) 132
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
FaiI YATR 1 cut(s) 210
FokI GGATG 1 cut(s) 133
FspBI CTAG 2 cut(s) 17, 54
GlaI GCGC 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 195
HapII CCGG 2 cut(s) 159, 199
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 131
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 1 cut(s) 177
HpaI GTTAAC 1 cut(s) 225
HpaII CCGG 2 cut(s) 159, 199
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 73, 225
Hpy188I TCNGA 2 cut(s) 106, 215
Hpy8I GTNNAC 2 cut(s) 73, 225
HpyAV CCTTC 2 cut(s) 5, 213
HpyCH4III ACNGT 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 131
HspAI GCGC 1 cut(s) 131
KasI GGCGCC 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 4 cut(s) 8, 125, 172, 212
MaeI CTAG 2 cut(s) 17, 54
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 2 cut(s) 100, 103
MluCI AATT 1 cut(s) 27
Mly113I GGCGCC 1 cut(s) 131
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 4 cut(s) 33, 87, 206, 209
MseI TTAA 2 cut(s) 111, 224
MspI CCGG 2 cut(s) 159, 199
NarI GGCGCC 1 cut(s) 131
NdeII GATC 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 142
PleI GAGTC 1 cut(s) 185
PluTI GGCGCC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 111, 224
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 186
SetI ASST 6 cut(s) 16, 39, 44, 49, 224, 232
SfoI GGCGCC 1 cut(s) 132
SinI GGWCC 1 cut(s) 59
Sse9I AATT 1 cut(s) 27
SspDI GGCGCC 1 cut(s) 130
SspMI CTAG 2 cut(s) 17, 54
TaaI ACNGT 1 cut(s) 148
TasI AATT 1 cut(s) 27
Tru1I TTAA 2 cut(s) 111, 224
Tru9I TTAA 2 cut(s) 111, 224
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 59
VspI ATTAAT 1 cut(s) 111
XspI CTAG 2 cut(s) 17, 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.