Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Reverse (-)

19672476 .. 19673652

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCAAAGGAAGGTCTAGCACTCGAGATCACAGAGCTTCGATTGGGTCTTCCAGGAGATAATTATAGCGAAATATCAGTATGCGGATCGAGTAAGAAGAAGAAGAGGGTGCTCTCGGATATGATGACCTCATCAGCGTTAGATACTGAGAATGAAAACAGCGTCGTTTCATCAGTTGAAGATGAATCACTGCCGGTTGTGAAGAGTCAAGCGGTGGGATGGCCACCTGTGTGTTCTTACAGGAGAAAGAAGAACAATGAGGAAGCATCGAAAGCTATAGGCTACGTGAAAGTGAGCATGGATGGTGTGCCATACATGAGGAAGATTGACCTTGGTTCGAGCAACAGTTATATTAATCTAGTCACGGTTCTTGAGAATCTCTTCGGCTGTCTTGGCATAGGAGTGGCGAAGGAGGGTAAGAAGTGTGAATACATTATTATATACGAAGACAAGGATAGAGACTGGATGCTCGTCGGAGATGTACCTTGGCAGATGTTTAAAGAATCATGCAAGAGGCTGAGGATCGTGAAGAGATCAGATGCAACTGGTTTTGGTCTCCAGCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

189

Amino Acids

21.03

Weight (kDa)

6.42

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	11 - 184	2.3e-47	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 212
AclWI	GGATC	2 cut(s)	94, 530
AcoI	YGGCCR	1 cut(s)	221
AfaI	GTAC	1 cut(s)	483
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	52
AleI	CACNNNNGTG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	37, 275
AluI	AGCT	2 cut(s)	37, 275
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	453, 560
AlwI	GGATC	2 cut(s)	94, 530
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	354
Asp700I	GAANNNNTTC	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbsI	GAAGAC	2 cut(s)	41, 453
Bbv12I	GWGCWC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	518
BccI	CCATC	2 cut(s)	213, 296
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	453, 560
BfaI	CTAG	2 cut(s)	17, 359
BfmI	CTRYAG	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	275, 456, 529
BpiI	GAAGAC	2 cut(s)	41, 453
BpmI	CTGGAG	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	331, 485
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	467, 550
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	331, 485
BseGI	GGATG	3 cut(s)	224, 307, 471
BseMII	CTCAG	2 cut(s)	138, 509
BseNI	ACTGG	2 cut(s)	467, 550
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	453, 560
BsnI	GGCC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	560
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	27, 86, 522, 533
BspACI	CCGC	2 cut(s)	84, 212
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	2 cut(s)	139, 510
BspPI	GGATC	2 cut(s)	94, 530
BspTNI	GGTCTC	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	467, 550
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	331, 485
BssMI	GATC	4 cut(s)	27, 86, 522, 533
BssT1I	CCWWGG	2 cut(s)	331, 485
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	347, 367
Bst6I	CTCTTC	4 cut(s)	98, 197, 386, 524
BstBAI	YACGTR	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	147, 518
BstF5I	GGATG	3 cut(s)	224, 307, 471
BstKTI	GATC	4 cut(s)	30, 89, 525, 536
BstMAI	GTCTC	2 cut(s)	453, 560
BstMBI	GATC	4 cut(s)	27, 86, 522, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 393
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	276
BstV2I	GAAGAC	2 cut(s)	41, 453
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	224, 307, 471
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	193
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	3 cut(s)	298, 316, 507
CviJI	RGCY	6 cut(s)	37, 223, 275, 282, 387, 517
CviKI_1	RGCY	6 cut(s)	37, 223, 275, 282, 387, 517
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	2 cut(s)	147, 518
DpnI	GATC	4 cut(s)	29, 88, 524, 535
DpnII	GATC	4 cut(s)	27, 86, 522, 533
DraI	TTTAAA	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	4 cut(s)	98, 197, 386, 524
EarI	CTCTTC	4 cut(s)	98, 197, 386, 524
Eco130I	CCWWGG	2 cut(s)	331, 485
Eco31I	GGTCTC	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	2 cut(s)	331, 485
ErhI	CCWWGG	2 cut(s)	331, 485
FaeI	CATG	3 cut(s)	301, 319, 510
FatI	CATG	3 cut(s)	297, 315, 506
FokI	GGATG	3 cut(s)	231, 314, 478
FspBI	CTAG	2 cut(s)	17, 359
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	301, 319, 510
HinfI	GANTC	4 cut(s)	185, 205, 376, 503
HpaII	CCGG	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	118, 476, 538
Hpy188III	TCNNGA	3 cut(s)	25, 371, 526
Hpy99I	CGWCG	2 cut(s)	167, 476
HpyAV	CCTTC	2 cut(s)	5, 403
HpyCH4III	ACNGT	2 cut(s)	347, 367
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	510, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 393
HpyF3I	CTNAG	2 cut(s)	147, 518
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	301, 319, 510
Kzo9I	GATC	4 cut(s)	27, 86, 522, 533
LpnPI	CCDG	7 cut(s)	39, 66, 207, 226, 240, 448, 531
LweI	GCATC	3 cut(s)	275, 456, 529
MaeI	CTAG	2 cut(s)	17, 359
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	29, 88, 524, 535
MboI	GATC	4 cut(s)	27, 86, 522, 533
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	1 cut(s)	61
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	7 cut(s)	99, 139, 253, 312, 406, 507, 513
Mox20I	TGGCCA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	3 cut(s)	354, 498, 568
MslI	CAYNNNNRTG	2 cut(s)	229, 401
Msp20I	TGGCCA	1 cut(s)	223
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	272, 393
NdeII	GATC	4 cut(s)	27, 86, 522, 533
NlaIII	CATG	3 cut(s)	301, 319, 510
NmuCI	GTSAC	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	185, 376, 503
PfoI	TCCNGGA	1 cut(s)	52
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Ppu21I	YACGTR	1 cut(s)	286
PshBI	ATTAAT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	2 cut(s)	229, 401
SaqAI	TTAA	3 cut(s)	354, 498, 568
Sau3AI	GATC	4 cut(s)	27, 86, 522, 533
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	8 cut(s)	16, 39, 131, 229, 277, 288, 333, 487
SfaNI	GCATC	3 cut(s)	275, 456, 529
SfcI	CTRYAG	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	229, 401
SmlI	CTYRAG	2 cut(s)	23, 371
SmoI	CTYRAG	2 cut(s)	23, 371
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	84, 212
SspMI	CTAG	2 cut(s)	17, 359
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	2 cut(s)	331, 485
TaaI	ACNGT	2 cut(s)	347, 367
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	5 cut(s)	24, 40, 89, 269, 338
TasI	AATT	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	185, 376, 503
Tru1I	TTAA	3 cut(s)	354, 498, 568
Tru9I	TTAA	3 cut(s)	354, 498, 568
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	159, 168, 198
TspRI	CASTG	1 cut(s)	195
VspI	ATTAAT	1 cut(s)	354
XhoI	CTCGAG	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	2 cut(s)	17, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.