Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Forward (+)

5480786 .. 5484245

Gene Structure 3460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G074800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCAAAGAAGGTTTAGGGCTTGAAATCACAGAGCTGAGGCTGGGGCTATCCAGTGGTCCAAGATTGGTGGACAAAAACGAGAAGAAAAGGGTTTTTTCACAGATTGCTGGCGGAGATGGACATAATAATAGCACATCCAGTGATGACGACCGGAAAAGCGAAACGAAGAACCAAGTTGTGGGGTGGCCTCCGGTGTGTTCTTACCGGAGGAAGATTAATAGCTTAAATGAGACGTCCAAAATGTACGTCAAGGTTAGCATGGATGGAGCTCCTTTTCTTCGTAAAATTGACTTGAGCATACACAACCAGTACGCAGATCTTGCCGTGGCATTGGAGAAGCTATTTGGTTGTTTTGGCATCGGCGAGGTGTTGAAGGATGCAGAGAACTGCGAATTTGCTCCTATTTATGAAGACAAAGATGGAGACTGGATGCTTGTGGGAGACGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATCATGAAGAGATCGGATGCCAAGGGATTTGGACTGCAGCCCAAGGGCTTCCTCAAGGCAACTATGAAAGATGATCCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

191

Amino Acids

21.3

Weight (kDa)

7.61

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	239, 450
AccB7I	CCANNNNNTGG	1 cut(s)	181
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	2 cut(s)	497, 557
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	395
AcyI	GRCGYC	2 cut(s)	236, 447
AfaI	GTAC	2 cut(s)	248, 314
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	26, 376
AluBI	AGCT	4 cut(s)	37, 225, 272, 343
AluI	AGCT	4 cut(s)	37, 225, 272, 343
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	3 cut(s)	227, 420, 438
AlwI	GGATC	2 cut(s)	497, 557
AoxI	GGCC	2 cut(s)	3, 188
ApeKI	GCWGC	1 cut(s)	526
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AseI	ATTAAT	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	2 cut(s)	38, 485
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	113, 260, 416
BceAI	ACGGC	1 cut(s)	311
BcoDI	GTCTC	3 cut(s)	227, 420, 438
BfmI	CTRYAG	1 cut(s)	524
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmsI	GCATC	4 cut(s)	369, 370, 423, 496
BpiI	GAAGAC	1 cut(s)	420
Bpu10I	CCTNAGC	2 cut(s)	38, 485
BpuEI	CTTGAG	2 cut(s)	316, 527
BsaHI	GRCGYC	2 cut(s)	236, 447
BsaJI	CCNNGG	4 cut(s)	327, 452, 510, 531
BsaWI	WCCGGW	3 cut(s)	153, 193, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	4 cut(s)	54, 141, 310, 434
BseDI	CCNNGG	4 cut(s)	327, 452, 510, 531
BseGI	GGATG	5 cut(s)	137, 271, 385, 438, 511
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	29, 476
BseNI	ACTGG	4 cut(s)	54, 141, 310, 434
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	5, 190
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	154, 194, 208
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	3 cut(s)	227, 420, 438
BsmBI	CGTCTC	2 cut(s)	227, 438
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	5, 190
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	4 cut(s)	319, 489, 500, 562
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	5, 190
BspCNI	CTCAG	2 cut(s)	30, 477
BspHI	TCATGA	1 cut(s)	492
BspMAI	CTGCAG	1 cut(s)	528
BspPI	GGATC	2 cut(s)	497, 557
BsrI	ACTGG	4 cut(s)	54, 141, 310, 434
BssECI	CCNNGG	4 cut(s)	327, 452, 510, 531
BssMI	GATC	4 cut(s)	319, 489, 500, 562
BssNI	GRCGYC	2 cut(s)	236, 447
BssT1I	CCWWGG	3 cut(s)	452, 510, 531
Bst6I	CTCTTC	1 cut(s)	491
BstACI	GRCGYC	2 cut(s)	236, 447
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	38, 485
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	5 cut(s)	137, 271, 385, 438, 511
BstKTI	GATC	4 cut(s)	322, 492, 503, 565
BstMAI	GTCTC	3 cut(s)	227, 420, 438
BstMBI	GATC	4 cut(s)	319, 489, 500, 562
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	5, 190
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	5 cut(s)	137, 271, 385, 438, 511
BtsIMutI	CAGTG	2 cut(s)	61, 148
Cac8I	GCNNGC	1 cut(s)	112
CciI	TCATGA	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	247, 313
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	3 cut(s)	262, 474, 493
CviQI	GTAC	2 cut(s)	247, 313
DdeI	CTNAG	2 cut(s)	38, 485
DpnI	GATC	4 cut(s)	321, 491, 502, 564
DpnII	GATC	4 cut(s)	319, 489, 500, 562
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	272
Eco130I	CCWWGG	3 cut(s)	452, 510, 531
Eco24I	GRGCYC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	272
EcoT14I	CCWWGG	3 cut(s)	452, 510, 531
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	3 cut(s)	452, 510, 531
Esp3I	CGTCTC	2 cut(s)	227, 438
FaeI	CATG	3 cut(s)	265, 477, 496
FaiI	YATR	7 cut(s)	126, 263, 302, 411, 475, 494, 554
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	3 cut(s)	261, 473, 492
Fnu4HI	GCNGC	1 cut(s)	527
FokI	GGATG	5 cut(s)	124, 278, 392, 445, 518
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	527
GluI	GCNGC	1 cut(s)	527
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	5, 190
HapII	CCGG	3 cut(s)	154, 194, 208
Hin1I	GRCGYC	2 cut(s)	236, 447
Hin1II	CATG	3 cut(s)	265, 477, 496
HinfI	GANTC	1 cut(s)	470
HpaII	CCGG	3 cut(s)	154, 194, 208
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	5, 370
HpyCH4IV	ACGT	3 cut(s)	236, 249, 447
HpyCH4V	TGCA	3 cut(s)	383, 477, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	38, 485
HpySE526I	ACGT	3 cut(s)	236, 249, 447
Hsp92I	GRCGYC	2 cut(s)	236, 447
Hsp92II	CATG	3 cut(s)	265, 477, 496
Kzo9I	GATC	4 cut(s)	319, 489, 500, 562
LmnI	GCTCC	3 cut(s)	269, 277, 406
LpnPI	CCDG	9 cut(s)	29, 67, 96, 154, 167, 207, 221, 323, 415
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	4 cut(s)	369, 370, 423, 496
MaeII	ACGT	3 cut(s)	236, 249, 447
MalI	GATC	4 cut(s)	321, 491, 502, 564
MboI	GATC	4 cut(s)	319, 489, 500, 562
MboII	GAAGA	6 cut(s)	97, 181, 226, 272, 425, 508
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	288, 395
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	7 cut(s)	33, 201, 204, 361, 474, 480, 551
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	219, 227
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	154, 194, 208
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	4 cut(s)	319, 489, 500, 562
NlaIII	CATG	3 cut(s)	265, 477, 496
PagI	TCATGA	1 cut(s)	492
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	528
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PshBI	ATTAAT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	248, 314
RsaNI	GTAC	2 cut(s)	247, 313
SacI	GAGCTC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	219, 227
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	4 cut(s)	319, 489, 500, 562
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	4 cut(s)	369, 370, 423, 496
SfcI	CTRYAG	1 cut(s)	524
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	295, 542
SmoI	CTYRAG	2 cut(s)	295, 542
Sse9I	AATT	2 cut(s)	288, 395
SsiI	CCGC	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	274
StyI	CCWWGG	3 cut(s)	452, 510, 531
TaiI	ACGT	3 cut(s)	239, 252, 450
TasI	AATT	2 cut(s)	288, 395
Tru1I	TTAA	2 cut(s)	219, 227
Tru9I	TTAA	2 cut(s)	219, 227
TscAI	CASTG	2 cut(s)	61, 148
TseI	GCWGC	1 cut(s)	526
TspDTI	ATGAA	3 cut(s)	426, 509, 569
TspRI	CASTG	2 cut(s)	61, 148
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	1 cut(s)	395
ZraI	GACGTC	2 cut(s)	237, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.