AT3G15540

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010876
Physical Location & Seq
Forward (+)
5264001 .. 5265695
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15540.1

Sequence Viewer

Length: 594 bp
ATGGAGAAGGAAGGACTCGGGCTTGAGATAACGGAGCTGAGATTGGGGCTTCCGGGGAGAGATGTGGCAGAGAAGATGATGAAGAAGAGAGCTTTCACGGAGATGAATATGACGTCGTCGGGTAGTAATAGTGATCAATGTGAAAGCGGCGTCGTTTCATCTGGTGGTGACGCTGAGAAGGTTAATGATTCGCCGGCGGCGAAAAGCCAGGTGGTGGGGTGGCCACCGGTTTGTTCTTACCGGAAGAAAAACAGCTGTAAGGAAGCTTCGACCACGAAAGTGGGGTTAGGGTATGTGAAAGTGAGCATGGATGGTGTGCCTTATTTGAGGAAGATGGATCTTGGTTCGAGCCAAGGCTATGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGGCATCGGTGTGGCCTTGAAAGATGGTGACAACTGCGAATACGTTACCATATACGAAGACAAAGATGGAGACTGGATGCTCGCCGGTGATGTACCTTGGGGGATGTTTCTAGAGTCATGCAAGAGGTTGAGAATAATGAAAAGATCGGATGCTACCGGGTTTGGGCTGCAGCCTAGAGGAGTAGACGAGTGA

Protein Analysis

197

Amino Acids

21.49

Weight (kDa)

5.25

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 11 - 188 1.9e-49 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15580 AT1G52830 AT3G15540
fragaria_vesca FvH4_6g30860
malus_domestica MD17G1198100.v1.1
prunus_persica Prupe.3G074800_v2.0.a1
pyrus_communis pycom09g13290 pycom17g20300
rosa_chinensis RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata RLG00000019650
rosa_multiflora Rmu_sc0010947.1_g000009
rosa_roxburghii Rroxscaffold_2G00107210
rosa_rugosa Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana Rw2G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 585
AciI CCGC 2 cut(s) 147, 197
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 221
AcyI GRCGYC 2 cut(s) 113, 150
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 214, 564
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 1 cut(s) 207
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 5 cut(s) 37, 92, 255, 266, 388
AluI AGCT 5 cut(s) 37, 92, 255, 266, 388
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 2 cut(s) 221, 414
ApeKI GCWGC 2 cut(s) 568, 571
AsiGI ACCGGT 1 cut(s) 226
AsuC2I CCSGG 2 cut(s) 54, 559
AsuHPI GGTGA 3 cut(s) 179, 440, 500
AvaI CYCGRG 1 cut(s) 17
BalI TGGCCA 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 250, 282
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 555, 583
BccI CCATC 4 cut(s) 305, 328, 419, 461
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 2 cut(s) 54, 559
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 3 cut(s) 368, 512, 576
BfmI CTRYAG 1 cut(s) 569
BisI GCNGC 4 cut(s) 148, 198, 569, 572
BlsI GCNGC 4 cut(s) 149, 199, 570, 573
Bme1390I CCNGG 3 cut(s) 54, 209, 559
BmeT110I CYCGRG 1 cut(s) 17
BmrFI CCNGG 3 cut(s) 54, 209, 559
BmsI GCATC 3 cut(s) 414, 468, 541
BpiI GAAGAC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 54, 559
BsaHI GRCGYC 2 cut(s) 113, 150
BsaJI CCNNGG 4 cut(s) 53, 352, 400, 497
BsaWI WCCGGW 2 cut(s) 226, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 564
Bse118I RCCGGY 3 cut(s) 193, 226, 485
Bse1I ACTGG 1 cut(s) 479
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 4 cut(s) 53, 352, 400, 497
BseGI GGATG 4 cut(s) 316, 483, 510, 556
BseLI CCNNNNNNNGG 2 cut(s) 214, 564
BseMII CTCAG 2 cut(s) 29, 165
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 594
BseXI GCAGC 2 cut(s) 555, 583
BshFI GGCC 2 cut(s) 223, 416
BshTI ACCGGT 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 6 cut(s) 53, 194, 227, 241, 486, 558
BslI CCNNNNNNNGG 2 cut(s) 214, 564
BsmAI GTCTC 1 cut(s) 465
BsnI GGCC 2 cut(s) 223, 416
BsoBI CYCGRG 1 cut(s) 17
Bsp143I GATC 4 cut(s) 133, 337, 364, 545
BspACI CCGC 2 cut(s) 147, 197
BspANI GGCC 2 cut(s) 223, 416
BspCNI CTCAG 2 cut(s) 30, 166
BspMAI CTGCAG 1 cut(s) 573
BspPI GGATC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 395
BsrFI RCCGGY 3 cut(s) 193, 226, 485
BsrI ACTGG 1 cut(s) 479
BssAI RCCGGY 3 cut(s) 193, 226, 485
BssECI CCNNGG 4 cut(s) 53, 352, 400, 497
BssMI GATC 4 cut(s) 133, 337, 364, 545
BssNI GRCGYC 2 cut(s) 113, 150
BssT1I CCWWGG 2 cut(s) 352, 497
Bst2UI CCWGG 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 80, 395
BstACI GRCGYC 2 cut(s) 113, 150
BstC8I GCNNGC 2 cut(s) 195, 483
BstDEI CTNAG 2 cut(s) 38, 174
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 4 cut(s) 316, 483, 510, 556
BstKTI GATC 4 cut(s) 136, 340, 367, 548
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 4 cut(s) 133, 337, 364, 545
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 3 cut(s) 52, 207, 557
BstSFI CTRYAG 1 cut(s) 569
BstV1I GCAGC 2 cut(s) 555, 583
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 280
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 223, 416
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 4 cut(s) 316, 483, 510, 556
Cac8I GCNNGC 2 cut(s) 195, 483
Cfr10I RCCGGY 3 cut(s) 193, 226, 485
CseI GACGC 2 cut(s) 139, 179
Csp6I GTAC 1 cut(s) 494
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 2 cut(s) 307, 519
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 2 cut(s) 38, 174
DpnI GATC 4 cut(s) 135, 339, 366, 547
DpnII GATC 4 cut(s) 133, 337, 364, 545
EaeI YGGCCR 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 80, 395
EarI CTCTTC 2 cut(s) 80, 395
Eco130I CCWWGG 2 cut(s) 352, 497
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 352, 497
ErhI CCWWGG 2 cut(s) 352, 497
FaeI CATG 2 cut(s) 310, 522
FaiI YATR 7 cut(s) 110, 294, 308, 360, 452, 454, 520
FatI CATG 2 cut(s) 306, 518
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 4 cut(s) 148, 198, 569, 572
FokI GGATG 4 cut(s) 323, 490, 517, 563
Fsp4HI GCNGC 4 cut(s) 148, 198, 569, 572
FspBI CTAG 3 cut(s) 368, 512, 576
GluI GCNGC 4 cut(s) 148, 198, 569, 572
HaeIII GGCC 2 cut(s) 223, 416
HapII CCGG 6 cut(s) 53, 194, 227, 241, 486, 558
HgaI GACGC 2 cut(s) 139, 179
Hin1I GRCGYC 2 cut(s) 113, 150
Hin1II CATG 2 cut(s) 310, 522
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 3 cut(s) 15, 188, 515
HpaII CCGG 6 cut(s) 53, 194, 227, 241, 486, 558
HphI GGTGA 3 cut(s) 179, 440, 500
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 2 cut(s) 380, 512
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 3 cut(s) 118, 121, 155
HpyAV CCTTC 2 cut(s) 5, 172
HpyCH4IV ACGT 2 cut(s) 113, 444
HpyCH4V TGCA 2 cut(s) 522, 571
HpyF3I CTNAG 2 cut(s) 38, 174
HpySE526I ACGT 2 cut(s) 113, 444
Hsp92I GRCGYC 2 cut(s) 113, 150
Hsp92II CATG 2 cut(s) 310, 522
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 4 cut(s) 133, 337, 364, 545
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 2 cut(s) 555, 583
LweI GCATC 3 cut(s) 414, 468, 541
MaeI CTAG 3 cut(s) 368, 512, 576
MaeII ACGT 2 cut(s) 113, 444
MaeIII GTNAC 3 cut(s) 167, 428, 445
MalI GATC 4 cut(s) 135, 339, 366, 547
MboI GATC 4 cut(s) 133, 337, 364, 545
MboII GAAGA 7 cut(s) 85, 94, 97, 256, 343, 382, 470
MflI RGATCY 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 223
MluNI TGGCCA 1 cut(s) 223
MlyI GAGTC 2 cut(s) 9, 524
MnlI CCTC 3 cut(s) 321, 519, 572
Mox20I TGGCCA 1 cut(s) 223
MreI CGCCGGCG 1 cut(s) 193
MroNI GCCGGC 1 cut(s) 193
MscI TGGCCA 1 cut(s) 223
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 3 cut(s) 101, 278, 410
Msp20I TGGCCA 1 cut(s) 223
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 6 cut(s) 53, 194, 227, 241, 486, 558
MspR9I CCNGG 3 cut(s) 54, 209, 559
MvaI CCWGG 1 cut(s) 209
NaeI GCCGGC 1 cut(s) 195
NciI CCSGG 2 cut(s) 54, 559
NdeII GATC 4 cut(s) 133, 337, 364, 545
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 2 cut(s) 310, 522
NmuCI GTSAC 2 cut(s) 167, 428
OliI CACNNNNGTG 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 188
PflFI GACNNNGTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 214
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 4 cut(s) 149, 199, 570, 573
PleI GAGTC 2 cut(s) 9, 523
PpsI GAGTC 2 cut(s) 9, 523
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PstI CTGCAG 1 cut(s) 573
PsuI RGATCY 1 cut(s) 337
PsyI GACNNNGTC 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 255
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 3 cut(s) 101, 278, 410
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 4 cut(s) 148, 198, 569, 572
Sau3AI GATC 4 cut(s) 133, 337, 364, 545
SchI GAGTC 2 cut(s) 9, 524
ScrFI CCNGG 3 cut(s) 54, 209, 559
SfaNI GCATC 3 cut(s) 414, 468, 541
SfcI CTRYAG 1 cut(s) 569
SgrAI CRCCGGYG 2 cut(s) 193, 485
SmiMI CAYNNNNRTG 3 cut(s) 101, 278, 410
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 2 cut(s) 147, 197
SspMI CTAG 3 cut(s) 368, 512, 576
StyD4I CCNGG 3 cut(s) 52, 207, 557
StyI CCWWGG 2 cut(s) 352, 497
TaiI ACGT 2 cut(s) 116, 447
TaqI TCGA 2 cut(s) 269, 347
TauI GCSGC 2 cut(s) 150, 200
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 2 cut(s) 167, 428
TseI GCWGC 2 cut(s) 568, 571
Tsp45I GTSAC 2 cut(s) 167, 428
TspDTI ATGAA 4 cut(s) 95, 119, 147, 554
TspGWI ACGGA 3 cut(s) 47, 113, 389
Tth111I GACNNNGTC 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 214
XbaI TCTAGA 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 3 cut(s) 368, 512, 576
ZraI GACGTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.