Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Reverse (-)

56307165 .. 56309719

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG397200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGAAAGAAGGTCTAGGGCTGGAAATTACCGAGCTGAGGTTAGGTCTCCCTAGTGGTCCAAGTTTAGTGGACAAAATCAAGGAGAAGAAGAGGGTATTTTCAGAGATTAATGGGGGGGATGGCAACGGCGCCAACTCTGGTGACCGTGATGACTACCGGAAAGATCAAGCCAAGAGTCAAGTTGTGGGGTGGCCTCCGGTGTGTTCATATCGGAGGAAGGTTAACAGCTTGAGTGAGACTTCGAAAATGTACGTGAAAGTCAGCATGGATGGTGCGCCTTTTCTTCGTAAAATAGACTTGGGCATGCACAACTGCTATGCAGATCTTGCTGTGGCCTTGGAGAAGCTATTTGGTTGTTTTGGTATAGGCGAGGTGTTGAAGGATGCAGACAGCTGCGAGTTTGCACCCATTTATGAAGACAAGGATGGAGATTGGATGCTAGTGGGAGACGTCCCTTGGGAGATGTTTCTCGAGTCATGCAAGAGACTACGGATCATGAAGAGATCGGATGCCAAGGGATTTGGAGTCCTGGAGTCCAAGGGCTTCCTCAAGGCAACGATGAAAGACGAACCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

193

Amino Acids

21.46

Weight (kDa)

6.62

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	11 - 175	6.5e-48	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	503
AcyI	GRCGYC	2 cut(s)	132, 453
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	4 cut(s)	37, 231, 349, 396
AluI	AGCT	4 cut(s)	37, 231, 349, 396
Alw26I	GTCTC	4 cut(s)	53, 233, 444, 481
AlwI	GGATC	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	194, 336
ApeKI	GCWGC	1 cut(s)	396
AseI	ATTAAT	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	134, 280
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	3 cut(s)	116, 266, 422
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	533
BcoDI	GTCTC	4 cut(s)	53, 233, 444, 481
BfaI	CTAG	3 cut(s)	17, 54, 443
BfoI	RGCGCY	1 cut(s)	135
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	3 cut(s)	376, 429, 502
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	253, 536
BsaAI	YACGTR	1 cut(s)	256
BsaHI	GRCGYC	2 cut(s)	132, 453
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	4 cut(s)	339, 458, 516, 540
BsaWI	WCCGGW	2 cut(s)	159, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	4 cut(s)	339, 458, 516, 540
BseGI	GGATG	6 cut(s)	127, 277, 391, 433, 444, 517
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	383
BshFI	GGCC	2 cut(s)	196, 338
BshNI	GGYRCC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	160, 200
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	4 cut(s)	53, 233, 444, 481
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	196, 338
Bso31I	GGTCTC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	245
Bsp143I	GATC	4 cut(s)	166, 325, 495, 506
BspANI	GGCC	2 cut(s)	196, 338
BspCNI	CTCAG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	503
BspT104I	TTCGAA	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	339, 458, 516, 540
BssMI	GATC	4 cut(s)	166, 325, 495, 506
BssNI	GRCGYC	2 cut(s)	132, 453
BssT1I	CCWWGG	4 cut(s)	339, 458, 516, 540
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	86, 497
BstACI	GRCGYC	2 cut(s)	132, 453
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	6 cut(s)	127, 277, 391, 433, 444, 517
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	134, 280
BstKTI	GATC	4 cut(s)	169, 328, 498, 509
BstMAI	GTCTC	4 cut(s)	53, 233, 444, 481
BstMBI	GATC	4 cut(s)	166, 325, 495, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	196, 338
BtsCI	GGATG	6 cut(s)	127, 277, 391, 433, 444, 517
Cac8I	GCNNGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	2 cut(s)	134, 280
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	4 cut(s)	268, 307, 480, 499
CviJI	RGCY	9 cut(s)	22, 37, 173, 196, 231, 338, 349, 396, 546
CviKI_1	RGCY	9 cut(s)	22, 37, 173, 196, 231, 338, 349, 396, 546
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	38
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	4 cut(s)	168, 327, 497, 508
DpnII	GATC	4 cut(s)	166, 325, 495, 506
Eam1104I	CTCTTC	2 cut(s)	86, 497
EarI	CTCTTC	2 cut(s)	86, 497
Eco130I	CCWWGG	4 cut(s)	339, 458, 516, 540
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	473
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	4 cut(s)	339, 458, 516, 540
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	4 cut(s)	339, 458, 516, 540
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	4 cut(s)	271, 310, 483, 502
FaiI	YATR	8 cut(s)	211, 269, 308, 321, 368, 417, 481, 500
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	4 cut(s)	267, 306, 479, 498
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	6 cut(s)	134, 284, 398, 440, 451, 524
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	3 cut(s)	17, 54, 443
GlaI	GCGC	2 cut(s)	133, 279
GluI	GCNGC	1 cut(s)	397
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	196, 338
HapII	CCGG	2 cut(s)	160, 200
HhaI	GCGC	2 cut(s)	134, 280
Hin1I	GRCGYC	2 cut(s)	132, 453
Hin1II	CATG	4 cut(s)	271, 310, 483, 502
Hin6I	GCGC	2 cut(s)	132, 278
HinP1I	GCGC	2 cut(s)	132, 278
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	4 cut(s)	178, 476, 528, 536
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	160, 200
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	73, 226
Hpy188I	TCNGA	3 cut(s)	106, 216, 511
Hpy188III	TCNNGA	2 cut(s)	473, 499
Hpy8I	GTNNAC	2 cut(s)	73, 226
HpyAV	CCTTC	3 cut(s)	5, 214, 376
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	2 cut(s)	255, 453
HpyCH4V	TGCA	5 cut(s)	310, 323, 389, 407, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	2 cut(s)	255, 453
Hsp92I	GRCGYC	2 cut(s)	132, 453
Hsp92II	CATG	4 cut(s)	271, 310, 483, 502
HspAI	GCGC	2 cut(s)	132, 278
KasI	GGCGCC	1 cut(s)	131
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	166, 325, 495, 506
LpnPI	CCDG	6 cut(s)	8, 126, 173, 213, 518, 545
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	3 cut(s)	376, 429, 502
MaeI	CTAG	3 cut(s)	17, 54, 443
MaeII	ACGT	2 cut(s)	255, 453
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	4 cut(s)	168, 327, 497, 508
MboI	GATC	4 cut(s)	166, 325, 495, 506
MboII	GAAGA	5 cut(s)	100, 103, 278, 431, 514
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	1 cut(s)	27
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	4 cut(s)	187, 485, 537, 545
MnlI	CCTC	6 cut(s)	33, 87, 207, 210, 367, 560
MseI	TTAA	2 cut(s)	111, 225
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	2 cut(s)	160, 200
MspR9I	CCNGG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	1 cut(s)	329
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	4 cut(s)	166, 325, 495, 506
NlaIII	CATG	4 cut(s)	271, 310, 483, 502
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	473
PagI	TCATGA	1 cut(s)	498
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	1 cut(s)	398
PleI	GAGTC	4 cut(s)	186, 484, 536, 544
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	4 cut(s)	186, 484, 536, 544
Ppu21I	YACGTR	1 cut(s)	256
PshBI	ATTAAT	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	531
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	396
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	111, 225
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	4 cut(s)	166, 325, 495, 506
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	4 cut(s)	187, 485, 537, 545
ScrFI	CCNGG	1 cut(s)	533
SfaNI	GCATC	3 cut(s)	376, 429, 502
SfoI	GGCGCC	1 cut(s)	133
Sfr274I	CTCGAG	1 cut(s)	473
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	473
SmlI	CTYRAG	3 cut(s)	232, 473, 551
SmoI	CTYRAG	3 cut(s)	232, 473, 551
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	1 cut(s)	27
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	3 cut(s)	17, 54, 443
StyD4I	CCNGG	1 cut(s)	531
StyI	CCWWGG	4 cut(s)	339, 458, 516, 540
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	2 cut(s)	258, 456
TaqI	TCGA	2 cut(s)	245, 474
TasI	AATT	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	111, 225
Tru9I	TTAA	2 cut(s)	111, 225
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	198, 432, 515, 578
TspGWI	ACGGA	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	111
XceI	RCATGY	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	473
XspI	CTAG	3 cut(s)	17, 54, 443
ZraI	GACGTC	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.