Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Reverse (-)

42433046 .. 42465837

Gene Structure 32792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGCCATCCCTCACTCCCAACTCCCTCGCCTCCCTTCTCCAATCCGCCGTCTCCACTCGCTCTTCTCTTCTGGGCCGAGCCGCCCACGCCCATATCATCAGAACCCTCCAACCCCCACACCCCTCCTTCCTCTCCAACCACCTCGTCAACATGTACTCCAAACTCGACCTCCCCATCTCCGCCCACCTCGTCCTCCGTCTCACCCCCTCTCCCTCCGTCGTCACCTGGACCGCCCTCATCGCCGGACTCGTCCACAACCGTCATTTCGCCTCCGCTCTCCTCCACTTTGCTAACATGCGCCGCGACTCCGTCCGCCCCAACGACTTCACCTTCCCCTGCGCCTTCAAGGCCTCCGGCTTGCTTCGTCTCCCGGTGGTCGGAAAACAGGTGCATGCCCTCGCCGTCAAGGCGGGGCAGATATGTGATGTCTTTGTTGGGTGCAGTGCTTTTGATATGTACTGCAAAACTGGGCTGAGAGACGATGCGGGGAAAGTGTTTGATGAAATGCCTGAGAGAAACCTTGCTACTTGGAATGCCTACATTTCGAATGCGGTGCTTGACCGGCGGCCGGTGAGTGCTGTAAACAAGTTTATTGAGTTTGTGAGGGCGGGTGGGGAGCCGAATTCGATAACCTTCTGTGCATTTCTCAATGCCTGTTCGGATACGTCGGCTTTGGAACTTGGGAGGCAGTTACATGGGTTTGTGGTGCGATGTGGGTATGGGAAAGATGTGTCAGTGCTCAATGGGCTTGTGGATTTTTATGGGAAGTGTCGGGATGTTGGGTCGTCTAAGATGGTTTTCGATAGAATTGGTGAGGCTAATCATGTCTCTTGGTGCTCCATGGTGGCTGCTTATGTGCAAAACTATGAGGAGGAGAAGGCTTGTGAGTTGTTTTTGCGGGCTAGGAGAGAAGGGGTTGAGCCGACGGATTTCATGGTTTCGAGTGTTTTGAGTGCTTGTTCTGGACTCGCGTGGCTTGAACAGGGTAGGTCAGTTCACGCGCTTGCGGTGAAGGCTTGTGTGGACGGAAATGTCTTTGTTGGGAGTGCACTCGTTGACATGTATGGAAAATGTGGGAGTATAGAAGATGCCGAGTGTGTATTTGATGCGATGCCTTCAAGGAACCTGATCAGTTGGAATGCGATGGTGGGTGGGTATACGCATCAAGGACATGCCGACATGGCTCTGGCATTGTTTGAGGAGATGAGTGCGGGAAGCCATGAGGTTAAACCAAATTATGTCACATTGGTGTGTGTATTGTCAGCATGTAGTAGGGCGGGGGCTGTTCAAAAGGGCATGCAGATCTTTGATTCAATGAAACAAAGGTATGGTGTTGAACCAGGGGCAGAGCATTATGCATGTGTTGTGGACTTGCTAGGGCGAGCTGGGATGGTAGAGCGCGCTTACGAGTTTATTACAAAGATGCCAATTAATCCAACAATTTCCATTTGGGGTGCTCTTCTTGGGGCTTGTAAAATGTATAGGAAGCCAGAATTGGGGAAGATTGCGGCTCACAAGTTATTTGAACTTGATCCTAAAGACTCTGGCAATCATGTGGTGCTTTCTAATTTGCTTGCAGCAACTGGCAGGTGGGAAGAAGCCACTCTTGTGAGAAAGGAGATGAAAGATGTTGGCATAAAAAAGGGTGCAGGCTACAGTTGGATCGCAGTCAAGAATGCAGTCCACATCTTCCAAGCAAAGGACACCTCCCATGAAATGAATTCTGAAATTCAGGCAATGCTGACCTATTTAAGGAGGAAAATGCAGGAAGCTGGGTACGTTCCAGATACAAATTTTGCTCTGTTTGATTTAGAAGAAGAAGAGAAAGTATCGGAAGTTTGGTACCACAGCGAGAAGATTGCCCTTGCCTTTGGCCTCATATCTATCCCTTCTGGGTTGCCTATAAGGATTAACAAAAACCTTAGGATCTGTGGAGATTGCCATGGTGCAATCAAATTCATATCAGGTATTGTAGACAGAGAAATTATTGTCAGGGATAACAATCGTTTTCATCACTTTAGAGATGGTCATTGCTCCTGTAGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

684

Amino Acids

75.46

Weight (kDa)

7.78

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 116	3.1e-08	PPR repeat family
E_motif	PF20431	495 - 555	6.3e-18	E motif
DYW_deaminase	PF14432	592 - 684	3e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1578
AasI	GACNNNNNNGTC	1 cut(s)	1031
Acc36I	ACCTGC	1 cut(s)	1578
Acc65I	GGTACC	1 cut(s)	1842
AccB1I	GGYRCC	1 cut(s)	1842
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	2 cut(s)	1157, 1974
AccII	CGCG	4 cut(s)	303, 971, 1001, 1401
AclWI	GGATC	3 cut(s)	1526, 1670, 1934
AcoI	YGGCCR	1 cut(s)	566
AcsI	RAATTY	5 cut(s)	622, 1720, 1728, 1792, 1955
AfaI	GTAC	4 cut(s)	155, 458, 1778, 1844
AfiI	CCNNNNNNNGG	5 cut(s)	377, 568, 1496, 1699, 1752
AflIII	ACRYGT	2 cut(s)	150, 1059
AgsI	TTSAA	7 cut(s)	346, 980, 1119, 1289, 1314, 1337, 1526
AjnI	CCWGG	2 cut(s)	224, 1339
AjuI	GAANNNNNNNTTGG	2 cut(s)	1478, 1510
AleI	CACNNNNGTG	2 cut(s)	1247, 1607
AluBI	AGCT	2 cut(s)	1385, 1772
AluI	AGCT	2 cut(s)	1385, 1772
Alw21I	GWGCWC	4 cut(s)	741, 839, 1051, 1459
Alw26I	GTCTC	5 cut(s)	55, 203, 371, 471, 832
Alw44I	GTGCAC	1 cut(s)	1047
AlwI	GGATC	3 cut(s)	1526, 1670, 1934
AlwNI	CAGNNNCTG	1 cut(s)	1583
AoxI	GGCC	4 cut(s)	73, 348, 566, 1873
ApaLI	GTGCAC	1 cut(s)	1047
ApeKI	GCWGC	2 cut(s)	848, 1577
ApoI	RAATTY	5 cut(s)	622, 1720, 1728, 1792, 1955
AseI	ATTAAT	1 cut(s)	1431
Asp718I	GGTACC	1 cut(s)	1842
AspLEI	GCGC	5 cut(s)	300, 341, 1003, 1401, 1403
AspS9I	GGNCC	2 cut(s)	73, 228
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	6 cut(s)	193, 214, 319, 583, 824, 1021
AsuII	TTCGAA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	228
AxyI	CCTNAGG	1 cut(s)	1922
BaeGI	GKGCMC	1 cut(s)	1051
BanI	GGYRCC	1 cut(s)	1842
Bbv12I	GWGCWC	4 cut(s)	741, 839, 1051, 1459
BbvI	GCAGC	2 cut(s)	835, 1589
BccI	CCATC	6 cut(s)	13, 182, 787, 1138, 1384, 2018
BceAI	ACGGC	2 cut(s)	32, 386
BcgI	CGANNNNNNTGC	4 cut(s)	535, 569, 1841, 1875
BciT130I	CCWGG	2 cut(s)	226, 1341
BciVI	GTATCC	1 cut(s)	655
BclI	TGATCA	1 cut(s)	1128
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	5 cut(s)	55, 203, 371, 471, 832
BfaI	CTAG	2 cut(s)	903, 1376
BfmI	CTRYAG	2 cut(s)	1654, 2038
BfuAI	ACCTGC	1 cut(s)	1578
BfuI	GTATCC	1 cut(s)	655
BglI	GCCNNNNNGGC	3 cut(s)	347, 407, 1181
BglII	AGATCT	1 cut(s)	1302
BisI	GCNGC	6 cut(s)	81, 301, 566, 849, 1509, 1578
BlsI	GCNGC	6 cut(s)	82, 302, 567, 850, 1510, 1579
Bme1390I	CCNGG	3 cut(s)	226, 371, 1341
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	73, 228
BmiI	GGNNCC	3 cut(s)	618, 1124, 1844
BmrFI	CCNGG	3 cut(s)	226, 371, 1341
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	6 cut(s)	472, 1078, 1096, 1101, 1171, 1413
BmuI	ACTGGG	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	2001
BsaJI	CCNNGG	3 cut(s)	840, 1340, 1942
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 153, 170, 183, 193, 223
Bsc4I	CCNNNNNNNGG	5 cut(s)	377, 568, 1496, 1699, 1752
Bse118I	RCCGGY	2 cut(s)	561, 568
Bse1I	ACTGG	2 cut(s)	472, 1588
Bse21I	CCTNAGG	1 cut(s)	1922
Bse3DI	GCAATG	2 cut(s)	1743, 2029
Bse8I	GATNNNNATC	1 cut(s)	2001
BseBI	CCWGG	2 cut(s)	226, 1341
BseDI	CCNNGG	3 cut(s)	840, 1340, 1942
BseGI	GGATG	3 cut(s)	5, 781, 1395
BseJI	GATNNNNATC	1 cut(s)	2001
BseLI	CCNNNNNNNGG	5 cut(s)	377, 568, 1496, 1699, 1752
BseMI	GCAATG	2 cut(s)	1743, 2029
BseMII	CTCAG	2 cut(s)	464, 501
BseNI	ACTGG	2 cut(s)	472, 1588
BsePI	GCGCGC	1 cut(s)	1399
BseRI	GAGGAG	4 cut(s)	269, 884, 887, 1214
BseSI	GKGCMC	1 cut(s)	1051
BseX3I	CGGCCG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	835, 1589
BseYI	CCCAGC	2 cut(s)	1385, 1772
BsgI	GTGCAG	2 cut(s)	460, 1668
Bsh1236I	CGCG	4 cut(s)	303, 971, 1001, 1401
Bsh1285I	CGRYCG	1 cut(s)	569
BshFI	GGCC	4 cut(s)	75, 350, 568, 1875
BshNI	GGYRCC	1 cut(s)	1842
BsiEI	CGRYCG	1 cut(s)	569
BsiHKAI	GWGCWC	4 cut(s)	741, 839, 1051, 1459
BsiSI	CCGG	5 cut(s)	243, 354, 371, 562, 569
BslI	CCNNNNNNNGG	5 cut(s)	377, 568, 1496, 1699, 1752
BsmAI	GTCTC	5 cut(s)	55, 203, 371, 471, 832
BsmBI	CGTCTC	4 cut(s)	55, 203, 371, 471
BsmI	GAATGC	4 cut(s)	538, 553, 1144, 1681
BsnI	GGCC	4 cut(s)	75, 350, 568, 1875
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	4 cut(s)	741, 839, 1051, 1459
Bsp143I	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
Bsp19I	CCATGG	2 cut(s)	840, 1942
BspANI	GGCC	4 cut(s)	75, 350, 568, 1875
BspCNI	CTCAG	2 cut(s)	465, 502
BspFNI	CGCG	4 cut(s)	303, 971, 1001, 1401
BspLI	GGNNCC	3 cut(s)	618, 1124, 1844
BspMI	ACCTGC	1 cut(s)	1578
BspPI	GGATC	3 cut(s)	1526, 1670, 1934
BspQI	GCTCTTC	2 cut(s)	67, 1464
BspT104I	TTCGAA	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	1842
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	1743, 2029
BsrFI	RCCGGY	2 cut(s)	561, 568
BsrI	ACTGG	2 cut(s)	472, 1588
BssAI	RCCGGY	2 cut(s)	561, 568
BssECI	CCNNGG	3 cut(s)	840, 1340, 1942
BssHII	GCGCGC	1 cut(s)	1399
BssMI	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
BssNAI	GTATAC	1 cut(s)	1158
BssT1I	CCWWGG	2 cut(s)	840, 1942
Bst1107I	GTATAC	1 cut(s)	1158
Bst2UI	CCWGG	2 cut(s)	226, 1341
Bst4CI	ACNGT	2 cut(s)	260, 1658
Bst6I	CTCTTC	4 cut(s)	67, 72, 1464, 1815
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	9 cut(s)	359, 393, 900, 1005, 1298, 1383, 1401, 1575, 1651
BstDEI	CTNAG	4 cut(s)	473, 510, 789, 1922
BstDSI	CCRYGG	2 cut(s)	840, 1942
BstENI	CCTNNNNNAGG	1 cut(s)	1750
BstF5I	GGATG	3 cut(s)	5, 781, 1395
BstFNI	CGCG	4 cut(s)	303, 971, 1001, 1401
BstHHI	GCGC	5 cut(s)	300, 341, 1003, 1401, 1403
BstKTI	GATC	5 cut(s)	1131, 1305, 1534, 1665, 1929
BstMAI	GTCTC	5 cut(s)	55, 203, 371, 471, 832
BstMBI	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
BstMCI	CGRYCG	1 cut(s)	569
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 239, 347, 407, 562, 745, 1013, 1181
BstNI	CCWGG	2 cut(s)	226, 1341
BstNSI	RCATGY	8 cut(s)	154, 298, 395, 1063, 1175, 1269, 1300, 1362
BstSCI	CCNGG	3 cut(s)	224, 369, 1339
BstSFI	CTRYAG	2 cut(s)	1654, 2038
BstSLI	GKGCMC	1 cut(s)	1051
BstUI	CGCG	4 cut(s)	303, 971, 1001, 1401
BstV1I	GCAGC	2 cut(s)	835, 1589
BstX2I	RGATCY	2 cut(s)	1302, 1926
BstYI	RGATCY	2 cut(s)	1302, 1926
BstZ17I	GTATAC	1 cut(s)	1158
BstZI	CGGCCG	1 cut(s)	566
Bsu36I	CCTNAGG	1 cut(s)	1922
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	4 cut(s)	75, 350, 568, 1875
BtgI	CCRYGG	2 cut(s)	840, 1942
BtgZI	GCGATG	4 cut(s)	223, 724, 1124, 1157
BtsCI	GGATG	3 cut(s)	5, 781, 1395
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	448, 741
BveI	ACCTGC	1 cut(s)	1578
Cac8I	GCNNGC	9 cut(s)	359, 393, 900, 1005, 1298, 1383, 1401, 1575, 1651
CaiI	CAGNNNCTG	1 cut(s)	1583
CfoI	GCGC	5 cut(s)	300, 341, 1003, 1401, 1403
Cfr10I	RCCGGY	2 cut(s)	561, 568
Cfr13I	GGNCC	2 cut(s)	73, 228
Csp6I	GTAC	4 cut(s)	154, 457, 1777, 1843
CviQI	GTAC	4 cut(s)	154, 457, 1777, 1843
DdeI	CTNAG	4 cut(s)	473, 510, 789, 1922
DpnI	GATC	5 cut(s)	1130, 1304, 1533, 1664, 1928
DpnII	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
DrdI	GACNNNNNNGTC	1 cut(s)	1031
DseDI	GACNNNNNNGTC	1 cut(s)	1031
EaeI	YGGCCR	1 cut(s)	566
EagI	CGGCCG	1 cut(s)	566
Eam1104I	CTCTTC	4 cut(s)	67, 72, 1464, 1815
EarI	CTCTTC	4 cut(s)	67, 72, 1464, 1815
EciI	GGCGGA	3 cut(s)	34, 169, 302
EclXI	CGGCCG	1 cut(s)	566
Eco130I	CCWWGG	2 cut(s)	840, 1942
Eco147I	AGGCCT	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	228
Eco52I	CGGCCG	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	1922
EcoNI	CCTNNNNNAGG	1 cut(s)	1750
EcoRI	GAATTC	2 cut(s)	622, 1720
EcoRII	CCWGG	2 cut(s)	224, 1339
EcoT14I	CCWWGG	2 cut(s)	840, 1942
EcoT22I	ATGCAT	1 cut(s)	1360
ErhI	CCWWGG	2 cut(s)	840, 1942
Esp3I	CGTCTC	4 cut(s)	55, 203, 371, 471
FalI	AAGNNNNNCTT	2 cut(s)	1590, 1622
FauI	CCCGC	6 cut(s)	403, 478, 601, 891, 1204, 1270
FbaI	TGATCA	1 cut(s)	1128
FblI	GTMKAC	2 cut(s)	1157, 1974
Fnu4HI	GCNGC	6 cut(s)	81, 301, 566, 849, 1509, 1578
FokI	GGATG	2 cut(s)	788, 1402
Fsp4HI	GCNGC	6 cut(s)	81, 301, 566, 849, 1509, 1578
FspBI	CTAG	2 cut(s)	903, 1376
GlaI	GCGC	5 cut(s)	299, 340, 1002, 1400, 1402
GluI	GCNGC	6 cut(s)	81, 301, 566, 849, 1509, 1578
GsaI	CCCAGC	2 cut(s)	1389, 1776
HaeIII	GGCC	4 cut(s)	75, 350, 568, 1875
HapII	CCGG	5 cut(s)	243, 354, 371, 562, 569
HhaI	GCGC	5 cut(s)	300, 341, 1003, 1401, 1403
Hin6I	GCGC	5 cut(s)	298, 339, 1001, 1399, 1401
HinP1I	GCGC	5 cut(s)	298, 339, 1001, 1399, 1401
HincII	GTYRAC	2 cut(s)	148, 1057
HindII	GTYRAC	2 cut(s)	148, 1057
HinfI	GANTC	5 cut(s)	246, 305, 966, 1310, 1541
HpaII	CCGG	5 cut(s)	243, 354, 371, 562, 569
HphI	GGTGA	6 cut(s)	193, 214, 319, 583, 824, 1021
Hpy188I	TCNGA	5 cut(s)	101, 380, 661, 1726, 1834
Hpy188III	TCNNGA	4 cut(s)	773, 963, 1672, 1784
Hpy99I	CGWCG	3 cut(s)	221, 670, 928
HpyCH4III	ACNGT	2 cut(s)	260, 1658
HpyCH4IV	ACGT	2 cut(s)	665, 1779
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 239, 347, 407, 562, 745, 1013, 1181
HpyF3I	CTNAG	4 cut(s)	473, 510, 789, 1922
HpySE526I	ACGT	2 cut(s)	665, 1779
HspAI	GCGC	5 cut(s)	298, 339, 1001, 1399, 1401
KpnI	GGTACC	1 cut(s)	1846
Ksp22I	TGATCA	1 cut(s)	1128
Kzo9I	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
LguI	GCTCTTC	2 cut(s)	67, 1464
LmnI	GCTCC	3 cut(s)	616, 842, 2039
Lsp1109I	GCAGC	2 cut(s)	835, 1589
LweI	GCATC	6 cut(s)	472, 1078, 1096, 1101, 1171, 1413
MaeI	CTAG	2 cut(s)	903, 1376
MaeII	ACGT	2 cut(s)	665, 1779
MaeIII	GTNAC	3 cut(s)	220, 690, 1240
MalI	GATC	5 cut(s)	1130, 1304, 1533, 1664, 1928
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
MflI	RGATCY	2 cut(s)	1302, 1926
MhlI	GDGCHC	4 cut(s)	741, 839, 1051, 1459
MlyI	GAGTC	4 cut(s)	240, 299, 960, 1535
MmeI	TCCRAC	6 cut(s)	133, 159, 358, 1115, 1460, 1640
Mph1103I	ATGCAT	1 cut(s)	1360
MseI	TTAA	4 cut(s)	1227, 1431, 1751, 1911
MslI	CAYNNNNRTG	3 cut(s)	1247, 1249, 1607
MspI	CCGG	5 cut(s)	243, 354, 371, 562, 569
MspR9I	CCNGG	3 cut(s)	226, 371, 1341
Mva1269I	GAATGC	4 cut(s)	538, 553, 1144, 1681
MvaI	CCWGG	2 cut(s)	226, 1341
MvnI	CGCG	4 cut(s)	303, 971, 1001, 1401
MwoI	GCNNNNNNNGC	8 cut(s)	86, 239, 347, 407, 562, 745, 1013, 1181
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	2 cut(s)	840, 1942
NdeII	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
NlaIV	GGNNCC	3 cut(s)	618, 1124, 1844
NmeAIII	GCCGAG	2 cut(s)	101, 1117
NmuCI	GTSAC	2 cut(s)	220, 1240
NsiI	ATGCAT	1 cut(s)	1360
NspI	RCATGY	8 cut(s)	154, 298, 395, 1063, 1175, 1269, 1300, 1362
NspV	TTCGAA	1 cut(s)	545
OliI	CACNNNNGTG	2 cut(s)	1247, 1607
PaeI	GCATGC	2 cut(s)	395, 1300
PaqCI	CACCTGC	1 cut(s)	1578
PauI	GCGCGC	1 cut(s)	1399
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	2 cut(s)	150, 1059
PciSI	GCTCTTC	2 cut(s)	67, 1464
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	4 cut(s)	538, 553, 1144, 1681
PfeI	GAWTC	1 cut(s)	1310
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	6 cut(s)	82, 302, 567, 850, 1510, 1579
PleI	GAGTC	4 cut(s)	240, 299, 960, 1535
PpsI	GAGTC	4 cut(s)	240, 299, 960, 1535
PscI	ACATGT	2 cut(s)	150, 1059
PshBI	ATTAAT	1 cut(s)	1431
Psp6I	CCWGG	2 cut(s)	224, 1339
PspFI	CCCAGC	2 cut(s)	1385, 1772
PspGI	CCWGG	2 cut(s)	224, 1339
PspN4I	GGNNCC	3 cut(s)	618, 1124, 1844
PspPI	GGNCC	2 cut(s)	73, 228
PstNI	CAGNNNCTG	1 cut(s)	1583
PsuI	RGATCY	2 cut(s)	1302, 1926
PsyI	GACNNNGTC	1 cut(s)	308
PteI	GCGCGC	1 cut(s)	1399
RsaI	GTAC	4 cut(s)	155, 458, 1778, 1844
RsaNI	GTAC	4 cut(s)	154, 457, 1777, 1843
RseI	CAYNNNNRTG	3 cut(s)	1247, 1249, 1607
SapI	GCTCTTC	2 cut(s)	67, 1464
SaqAI	TTAA	4 cut(s)	1227, 1431, 1751, 1911
SatI	GCNGC	6 cut(s)	81, 301, 566, 849, 1509, 1578
Sau3AI	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
Sau96I	GGNCC	2 cut(s)	73, 228
SchI	GAGTC	4 cut(s)	240, 299, 960, 1535
ScrFI	CCNGG	3 cut(s)	226, 371, 1341
SduI	GDGCHC	4 cut(s)	741, 839, 1051, 1459
SfaNI	GCATC	6 cut(s)	472, 1078, 1096, 1101, 1171, 1413
SfcI	CTRYAG	2 cut(s)	1654, 2038
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	3 cut(s)	1247, 1249, 1607
SphI	GCATGC	2 cut(s)	395, 1300
SseBI	AGGCCT	1 cut(s)	350
SspMI	CTAG	2 cut(s)	903, 1376
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	224, 369, 1339
StyI	CCWWGG	2 cut(s)	840, 1942
TaaI	ACNGT	2 cut(s)	260, 1658
TaiI	ACGT	2 cut(s)	668, 1782
TaqI	TCGA	5 cut(s)	165, 545, 626, 801, 941
TatI	WGTACW	2 cut(s)	153, 456
TauI	GCSGC	4 cut(s)	83, 303, 568, 1511
TfiI	GAWTC	1 cut(s)	1310
Tru1I	TTAA	4 cut(s)	1227, 1431, 1751, 1911
Tru9I	TTAA	4 cut(s)	1227, 1431, 1751, 1911
TscAI	CASTG	2 cut(s)	448, 741
TseFI	GTSAC	2 cut(s)	220, 1240
TseI	GCWGC	2 cut(s)	848, 1577
Tsp45I	GTSAC	2 cut(s)	220, 1240
TspDTI	ATGAA	8 cut(s)	516, 922, 1331, 1637, 1728, 1733, 1948, 2000
TspGWI	ACGGA	5 cut(s)	185, 205, 298, 941, 1041
TspRI	CASTG	2 cut(s)	448, 741
Tth111I	GACNNNGTC	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	1047
VpaK11BI	GGWCC	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	1431
XagI	CCTNNNNNAGG	1 cut(s)	1750
XapI	RAATTY	5 cut(s)	622, 1720, 1728, 1792, 1955
XceI	RCATGY	8 cut(s)	154, 298, 395, 1063, 1175, 1269, 1300, 1362
XmiI	GTMKAC	2 cut(s)	1157, 1974
XspI	CTAG	2 cut(s)	903, 1376
Zsp2I	ATGCAT	1 cut(s)	1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.