Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Reverse (-)

24018552 .. 24021182

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGAAAGAAGGTCTAGGGCTGGAAATCACAGAGCTGAGGTTAGGTCTCCCCAGTGGTCCAAGTTTAGGGGACAACATCAAGGAGAAGAAGAGGGTATTTTCGGAGATTAATGGAGGAGGAGATGGAAACGGCGCCAACACTACTGGTGACCGTGACGACTACCGGAAAGGCCAAGCAAAGAGTCAAGTTGTGGGGTGGCCTCCGGTGTGTTCATATCGGAGGAAGGTTAACAGCTTGAGTGAGACTTCGAAAATGTACGTGAAAGTCAGCATGGATGGTGCGCCTTTTCTTCGTAAACTGGATTTGGGCATGCACAGTTGCTATGCAGATCTTGTTGTTGCCTTGGAGAAGCTATTTGGTTGTTTTGGTATAGGCGAGGTGTTGAAGGATGCAGACAGCTGCGAGTTTGCACCCATTTATGAAGACAAGGATGGAGATTGGATGCTAGTGGGAGACGTCCCTTGGGAGATGTTTCTTGAATCCTGCAAGAGGCTGCGGATCATGAAGAGATCGGATGCCAAGGGATTTGGAATTCTGGAGTCCAAGGGCTTCCTCAAGGCAACGATGAAAGACGAGCCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

196

Amino Acids

21.59

Weight (kDa)

5.99

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	11 - 177	3.3e-47	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	1 cut(s)	499
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	534
AcyI	GRCGYC	2 cut(s)	135, 459
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	68, 492
AgsI	TTSAA	2 cut(s)	388, 482
AluBI	AGCT	4 cut(s)	37, 237, 355, 402
AluI	AGCT	4 cut(s)	37, 237, 355, 402
Alw26I	GTCTC	3 cut(s)	53, 239, 450
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	2 cut(s)	172, 200
ApeKI	GCWGC	2 cut(s)	402, 496
ApoI	RAATTY	1 cut(s)	534
AseI	ATTAAT	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	137, 286
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	161
AsuII	TTCGAA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	389, 483
BccI	CCATC	3 cut(s)	119, 272, 428
BceAI	ACGGC	1 cut(s)	148
BcoDI	GTCTC	3 cut(s)	53, 239, 450
BfaI	CTAG	2 cut(s)	17, 449
BfoI	RGCGCY	1 cut(s)	138
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	2 cut(s)	403, 497
BlsI	GCNGC	2 cut(s)	404, 498
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	3 cut(s)	382, 435, 508
BmuI	ACTGGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	259, 542
BsaAI	YACGTR	1 cut(s)	262
BsaHI	GRCGYC	2 cut(s)	135, 459
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	4 cut(s)	345, 464, 522, 546
BsaWI	WCCGGW	2 cut(s)	165, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 492
Bse1I	ACTGG	3 cut(s)	54, 151, 306
BseDI	CCNNGG	4 cut(s)	345, 464, 522, 546
BseGI	GGATG	5 cut(s)	283, 397, 439, 450, 523
BseLI	CCNNNNNNNGG	2 cut(s)	68, 492
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	3 cut(s)	54, 151, 306
BseRI	GAGGAG	2 cut(s)	132, 135
BseXI	GCAGC	2 cut(s)	389, 483
BshFI	GGCC	2 cut(s)	174, 202
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	166, 206
BslFI	GGGAC	2 cut(s)	86, 446
BslI	CCNNNNNNNGG	2 cut(s)	68, 492
BsmAI	GTCTC	3 cut(s)	53, 239, 450
BsmBI	CGTCTC	1 cut(s)	450
BsmFI	GGGAC	2 cut(s)	86, 446
BsnI	GGCC	2 cut(s)	174, 202
Bso31I	GGTCTC	1 cut(s)	53
Bsp119I	TTCGAA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	331, 501, 512
BspACI	CCGC	1 cut(s)	499
BspANI	GGCC	2 cut(s)	174, 202
BspCNI	CTCAG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	509
BspT104I	TTCGAA	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	54, 151, 306
BssECI	CCNNGG	4 cut(s)	345, 464, 522, 546
BssMI	GATC	3 cut(s)	331, 501, 512
BssNI	GRCGYC	2 cut(s)	135, 459
BssT1I	CCWWGG	4 cut(s)	345, 464, 522, 546
Bst4CI	ACNGT	2 cut(s)	155, 320
Bst6I	CTCTTC	2 cut(s)	86, 503
BstACI	GRCGYC	2 cut(s)	135, 459
BstBAI	YACGTR	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	490
BstF5I	GGATG	5 cut(s)	283, 397, 439, 450, 523
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 286
BstKTI	GATC	3 cut(s)	334, 504, 515
BstMAI	GTCTC	3 cut(s)	53, 239, 450
BstMBI	GATC	3 cut(s)	331, 501, 512
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	389, 483
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	174, 202
BtsCI	GGATG	5 cut(s)	283, 397, 439, 450, 523
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	314
CciI	TCATGA	1 cut(s)	504
CfoI	GCGC	2 cut(s)	137, 286
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	274, 313, 505
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	38
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	3 cut(s)	333, 503, 514
DpnII	GATC	3 cut(s)	331, 501, 512
Eam1104I	CTCTTC	2 cut(s)	86, 503
EarI	CTCTTC	2 cut(s)	86, 503
Eco130I	CCWWGG	4 cut(s)	345, 464, 522, 546
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	534
EcoT14I	CCWWGG	4 cut(s)	345, 464, 522, 546
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	4 cut(s)	345, 464, 522, 546
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	3 cut(s)	277, 316, 508
FaiI	YATR	7 cut(s)	217, 275, 314, 327, 374, 423, 506
FaqI	GGGAC	2 cut(s)	86, 446
FatI	CATG	3 cut(s)	273, 312, 504
Fnu4HI	GCNGC	2 cut(s)	403, 497
FokI	GGATG	5 cut(s)	290, 404, 446, 457, 530
Fsp4HI	GCNGC	2 cut(s)	403, 497
FspBI	CTAG	2 cut(s)	17, 449
GlaI	GCGC	2 cut(s)	136, 285
GluI	GCNGC	2 cut(s)	403, 497
GsuI	CTGGAG	1 cut(s)	560
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	174, 202
HapII	CCGG	2 cut(s)	166, 206
HhaI	GCGC	2 cut(s)	137, 286
Hin1I	GRCGYC	2 cut(s)	135, 459
Hin1II	CATG	3 cut(s)	277, 316, 508
Hin6I	GCGC	2 cut(s)	135, 284
HinP1I	GCGC	2 cut(s)	135, 284
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	3 cut(s)	184, 482, 542
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	2 cut(s)	166, 206
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	232, 299
Hpy188I	TCNGA	3 cut(s)	106, 222, 517
Hpy188III	TCNNGA	3 cut(s)	479, 505, 539
Hpy8I	GTNNAC	2 cut(s)	232, 299
HpyAV	CCTTC	3 cut(s)	5, 220, 382
HpyCH4III	ACNGT	2 cut(s)	155, 320
HpyCH4IV	ACGT	2 cut(s)	261, 459
HpyCH4V	TGCA	5 cut(s)	316, 329, 395, 413, 489
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	2 cut(s)	261, 459
Hsp92I	GRCGYC	2 cut(s)	135, 459
Hsp92II	CATG	3 cut(s)	277, 316, 508
HspAI	GCGC	2 cut(s)	135, 284
KasI	GGCGCC	1 cut(s)	134
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	331, 501, 512
LpnPI	CCDG	8 cut(s)	8, 67, 132, 179, 219, 287, 499, 524
Lsp1109I	GCAGC	2 cut(s)	389, 483
LweI	GCATC	3 cut(s)	382, 435, 508
MaeI	CTAG	2 cut(s)	17, 449
MaeII	ACGT	2 cut(s)	261, 459
MaeIII	GTNAC	2 cut(s)	149, 155
MalI	GATC	3 cut(s)	333, 503, 514
MboI	GATC	3 cut(s)	331, 501, 512
MboII	GAAGA	5 cut(s)	100, 103, 284, 437, 520
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	1 cut(s)	534
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	193, 551
MnlI	CCTC	9 cut(s)	33, 87, 110, 113, 213, 216, 373, 486, 566
MseI	TTAA	2 cut(s)	111, 231
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	2 cut(s)	166, 206
NarI	GGCGCC	1 cut(s)	135
NdeII	GATC	3 cut(s)	331, 501, 512
NlaIII	CATG	3 cut(s)	277, 316, 508
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	149, 155
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	316
PagI	TCATGA	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	404, 498
PleI	GAGTC	2 cut(s)	192, 550
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	2 cut(s)	192, 550
Ppu21I	YACGTR	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	402
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	111, 231
SatI	GCNGC	2 cut(s)	403, 497
Sau3AI	GATC	3 cut(s)	331, 501, 512
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	2 cut(s)	193, 551
SfaNI	GCATC	3 cut(s)	382, 435, 508
SfoI	GGCGCC	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	251
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	238, 557
SmoI	CTYRAG	2 cut(s)	238, 557
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	1 cut(s)	534
SsiI	CCGC	1 cut(s)	499
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	2 cut(s)	17, 449
StyI	CCWWGG	4 cut(s)	345, 464, 522, 546
TaaI	ACNGT	2 cut(s)	155, 320
TaiI	ACGT	2 cut(s)	264, 462
TaqI	TCGA	1 cut(s)	251
TasI	AATT	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	111, 231
Tru9I	TTAA	2 cut(s)	111, 231
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	149, 155
TseI	GCWGC	2 cut(s)	402, 496
Tsp45I	GTSAC	2 cut(s)	149, 155
TspDTI	ATGAA	4 cut(s)	204, 438, 521, 584
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	490
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	2 cut(s)	17, 449
ZraI	GACGTC	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.