Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Forward (+)

11964707 .. 11967759

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13290.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTGCCGGCCTTTATTAGTGTTTGTAAGGGGCACATAGTCCCCACTTTTGCCTCTCATGTGACCGACCAACTAAGTCACTTAAAACTGTATACAAAAATCCCATTTCCCACCAATCAGCAGTTGATCCAAACAAGGAAAATAACACACCCAAATTGCTCAAACCTCAAAACCCAAATGGCCAAAGAAGGTTTAGGGCTTGAACTTACAGAGCTGCGGTTGGGATTGTCTAGTGGTCCAATTTTAGTGGACAAAAACGAGAAGAAAAGGGTGTTTTCAAAGATTGACGGTGGAGATGGCCGGAATAGTACCACGCCTGGTGACTGCCGGAAAAGTCAGACAAAGAATCAGGTTGTGGGGTGGCCTCCATTGTGTTCATACAGAATGAAGATTAATGGCTTGAATGAGACGTCGAAAATGTACGTCAAAGTTAGCATGGATGGAGCACCTTTTCTTCGTAAAATTGACTTGACCATGCACAAGGAGTATGCAGATCTTGCTCTCGCGTTGGAGAAGTTATTTGGTTGCTATGGCATCGGCGAGGTGTTGAAAAATGCAGACAACTGTGAATTTACACCCATTTATGAAGACAAAGATGGAGACTGGATGCTAGTGGGAGACGTTCCTTGGGAGATGTTTATTAAGTCATGCAAGAGGCTTAGGATCATGAAGAGATCGGATGCCAAGGGAACGATGGAAGAGGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

237

Amino Acids

26.57

Weight (kDa)

8.87

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	92
AccII	CGCG	1 cut(s)	506
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	121, 671
AcoI	YGGCCR	2 cut(s)	180, 298
AcsI	RAATTY	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	410
AfaI	GTAC	2 cut(s)	310, 422
AgsI	TTSAA	4 cut(s)	203, 279, 403, 550
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	3 cut(s)	401, 594, 612
AlwI	GGATC	2 cut(s)	121, 671
AoxI	GGCC	4 cut(s)	9, 180, 298, 362
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	569
AseI	ATTAAT	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	4 cut(s)	290, 434, 590, 688
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	3 cut(s)	401, 594, 612
BfaI	CTAG	2 cut(s)	231, 611
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	6, 705
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	543, 597, 670
BpiI	GAAGAC	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	659
BsaHI	GRCGYC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	626, 684
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	626, 684
BseGI	GGATG	3 cut(s)	445, 612, 685
BseNI	ACTGG	1 cut(s)	608
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	4 cut(s)	11, 182, 300, 364
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	3 cut(s)	8, 301, 328
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	3 cut(s)	401, 594, 612
BsmBI	CGTCTC	2 cut(s)	401, 612
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	4 cut(s)	11, 182, 300, 364
Bsp1286I	GDGCHC	2 cut(s)	36, 448
Bsp143I	GATC	4 cut(s)	126, 493, 663, 674
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	4 cut(s)	11, 182, 300, 364
BspFNI	CGCG	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	6, 705
BspPI	GGATC	2 cut(s)	121, 671
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	626, 684
BssMI	GATC	4 cut(s)	126, 493, 663, 674
BssNAI	GTATAC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	410
BssT1I	CCWWGG	2 cut(s)	626, 684
Bst1107I	GTATAC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	90, 290, 566
Bst6I	CTCTTC	2 cut(s)	665, 693
BstACI	GRCGYC	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	74, 659
BstF5I	GGATG	3 cut(s)	445, 612, 685
BstFNI	CGCG	1 cut(s)	506
BstKTI	GATC	4 cut(s)	129, 496, 666, 677
BstMAI	GTCTC	3 cut(s)	401, 594, 612
BstMBI	GATC	4 cut(s)	126, 493, 663, 674
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	36
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BstZ17I	GTATAC	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	11, 182, 300, 364
BtsCI	GGATG	3 cut(s)	445, 612, 685
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	666
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	309, 421
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	5 cut(s)	59, 436, 475, 648, 667
CviJI	RGCY	9 cut(s)	11, 182, 199, 214, 300, 364, 399, 658, 706
CviKI_1	RGCY	9 cut(s)	11, 182, 199, 214, 300, 364, 399, 658, 706
CviQI	GTAC	2 cut(s)	309, 421
DdeI	CTNAG	2 cut(s)	74, 659
DpnI	GATC	4 cut(s)	128, 495, 665, 676
DpnII	GATC	4 cut(s)	126, 493, 663, 674
EaeI	YGGCCR	2 cut(s)	180, 298
Eam1104I	CTCTTC	2 cut(s)	665, 693
EarI	CTCTTC	2 cut(s)	665, 693
Eco130I	CCWWGG	2 cut(s)	626, 684
Eco47I	GGWCC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	626, 684
ErhI	CCWWGG	2 cut(s)	626, 684
Esp3I	CGTCTC	2 cut(s)	401, 612
FaeI	CATG	5 cut(s)	62, 439, 478, 651, 670
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	5 cut(s)	58, 435, 474, 647, 666
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	3 cut(s)	452, 619, 692
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	2 cut(s)	231, 611
GluI	GCNGC	1 cut(s)	215
HaeIII	GGCC	4 cut(s)	11, 182, 300, 364
HapII	CCGG	3 cut(s)	8, 301, 328
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	5 cut(s)	62, 439, 478, 651, 670
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	3 cut(s)	8, 301, 328
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	93, 250
Hpy188I	TCNGA	2 cut(s)	339, 679
Hpy188III	TCNNGA	1 cut(s)	667
Hpy8I	GTNNAC	2 cut(s)	93, 250
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	3 cut(s)	90, 290, 566
HpyCH4IV	ACGT	3 cut(s)	410, 423, 621
HpyCH4V	TGCA	4 cut(s)	478, 491, 557, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	74, 659
HpySE526I	ACGT	3 cut(s)	410, 423, 621
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	5 cut(s)	62, 439, 478, 651, 670
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	126, 493, 663, 674
LmnI	GCTCC	2 cut(s)	443, 703
LpnPI	CCDG	7 cut(s)	21, 303, 314, 330, 335, 341, 589
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	3 cut(s)	543, 597, 670
MaeI	CTAG	2 cut(s)	231, 611
MaeII	ACGT	3 cut(s)	410, 423, 621
MaeIII	GTNAC	3 cut(s)	61, 77, 320
MalI	GATC	4 cut(s)	128, 495, 665, 676
MboI	GATC	4 cut(s)	126, 493, 663, 674
MboII	GAAGA	6 cut(s)	274, 400, 446, 599, 682, 710
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	2 cut(s)	36, 448
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	4 cut(s)	154, 240, 462, 569
MluNI	TGGCCA	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	6 cut(s)	64, 176, 375, 535, 648, 694
Mox20I	TGGCCA	1 cut(s)	182
MroNI	GCCGGC	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	3 cut(s)	83, 393, 642
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	3 cut(s)	8, 301, 328
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	497
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	4 cut(s)	126, 493, 663, 674
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	5 cut(s)	62, 439, 478, 651, 670
NlaIV	GGNNCC	2 cut(s)	6, 705
NmuCI	GTSAC	3 cut(s)	61, 77, 320
PagI	TCATGA	1 cut(s)	666
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	6, 705
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	2 cut(s)	310, 422
RsaNI	GTAC	2 cut(s)	309, 421
SaqAI	TTAA	3 cut(s)	83, 393, 642
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	4 cut(s)	126, 493, 663, 674
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	2 cut(s)	36, 448
SetI	ASST	9 cut(s)	168, 193, 216, 354, 413, 426, 451, 546, 624
SfaNI	GCATC	3 cut(s)	543, 597, 670
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	4 cut(s)	154, 240, 462, 569
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	2 cut(s)	231, 611
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	626, 684
TaaI	ACNGT	3 cut(s)	90, 290, 566
TaiI	ACGT	3 cut(s)	413, 426, 624
TaqI	TCGA	1 cut(s)	413
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	4 cut(s)	154, 240, 462, 569
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	3 cut(s)	83, 393, 642
Tru9I	TTAA	3 cut(s)	83, 393, 642
TseFI	GTSAC	3 cut(s)	61, 77, 320
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	3 cut(s)	61, 77, 320
TspDTI	ATGAA	4 cut(s)	366, 401, 600, 683
VpaK11BI	GGWCC	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	2 cut(s)	231, 611
ZraI	GACGTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.