AT1G16210

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008369
Physical Location & Seq
Reverse (-)
5546099 .. 5547753
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16210.1

Sequence Viewer

Length: 705 bp
ATGCCGAAGAAGATGGGTCTGAACAGCAAGGCGGAGGTCGCCAAATCTCGTAAGAACGCCGCGGAGGCTGAGCAGAAGGATCGTCAGACTCGGGAGAAAGAGGAACAATACTGGCGCGAGGCGGAAGGTCCCAAATCCAAAGCGGTGAAGAAGCGAGAAGAGGAAGCGGAGAAGAAGGCAGAGACCGCCGCTAAGAAATTGGAGGCGAAGCGTCTGGCTGAGCAGGAGGAGAAAGAGTTGGAGAAGGCTTTGAAAAAGCCAGACAAGAAGGCGAATCGCGTCACTGTGCCGGTTCCTAAGGTCACAGAGGCTGAGCTCATCCGAAGACGCGAGGAAGATCAAGTGGCTCTGGCTAAGAAAGCAGAAGACTCTAAGAAGAAACAGACTCGCATGGCAGGGGAAGATGAGTATGAAAAGATGGTTCTGGTGACCAATACCAATCGCGATGATTCTCTCATCGAGGCACATACCGTTGACGAGGCTCTTGCACGGATTACTGTGTCAGATAACCTGCCCGTTGATCGACACCCGGAGAAGAGGCTCAAGGCTTCTTTTAAGGCATATGAAGAAGTGGAACTTCCAAGGCTCAAGTCTGAGAAACCAGGTCTAACTCACACACAGTACAAGGACTTGATATGGAAGATGTGGAAGAAATCACCAGATAATCCTCTTAACCAGGCTGCGGCTGCTGCTGCTAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ccdc124

Protein Analysis

234

Amino Acids

26.83

Weight (kDa)

9.22

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ccdc124 PF06244 146 - 226 5.2e-33 Coiled-coil domain-containing protein 124 /Oxs1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 519
AccII CGCG 5 cut(s) 62, 117, 279, 330, 444
AciI CCGC 9 cut(s) 32, 60, 62, 122, 143, 167, 186, 189, 683
AclWI GGATC 1 cut(s) 87
AfaI GTAC 1 cut(s) 623
AfiI CCNNNNNNNGG 1 cut(s) 682
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 2 cut(s) 601, 675
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 90
ApeKI GCWGC 4 cut(s) 680, 686, 689, 692
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 3 cut(s) 157, 439, 648
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 297
BanII GRGCYC 1 cut(s) 318
BbsI GAAGAC 2 cut(s) 331, 372
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 4 cut(s) 667, 673, 676, 679
BccI CCATC 2 cut(s) 7, 412
BcgI CGANNNNNNTGC 4 cut(s) 62, 96, 467, 501
BciT130I CCWGG 2 cut(s) 603, 677
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 519
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 7 cut(s) 60, 189, 681, 684, 687, 690, 693
BlpI GCTNAGC 3 cut(s) 69, 219, 312
BlsI GCNGC 7 cut(s) 61, 190, 682, 685, 688, 691, 694
Bme1390I CCNGG 3 cut(s) 530, 603, 677
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 130, 294
BmrFI CCNGG 3 cut(s) 530, 603, 677
BpiI GAAGAC 2 cut(s) 331, 372
Bpu1102I GCTNAGC 3 cut(s) 69, 219, 312
BpuEI CTTGAG 2 cut(s) 527, 572
BpuMI CCSGG 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 60, 581
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 682
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 116
Bse21I CCTNAGG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 603, 677
BseDI CCNNGG 2 cut(s) 60, 581
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 682
BseMII CTCAG 4 cut(s) 60, 210, 303, 585
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 4 cut(s) 667, 673, 676, 679
Bsh1236I CGCG 5 cut(s) 62, 117, 279, 330, 444
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 2 cut(s) 290, 530
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 682
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 3 cut(s) 79, 337, 520
Bsp1720I GCTNAGC 3 cut(s) 69, 219, 312
Bsp68I TCGCGA 1 cut(s) 444
BspACI CCGC 9 cut(s) 32, 60, 62, 122, 143, 167, 186, 189, 683
BspCNI CTCAG 4 cut(s) 61, 211, 304, 586
BspFNI CGCG 5 cut(s) 62, 117, 279, 330, 444
BspLI GGNNCC 2 cut(s) 130, 294
BspMI ACCTGC 1 cut(s) 519
BspPI GGATC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 60, 581
BssMI GATC 3 cut(s) 79, 337, 520
BssT1I CCWWGG 1 cut(s) 581
Bst2UI CCWGG 2 cut(s) 603, 677
Bst4CI ACNGT 4 cut(s) 286, 472, 499, 621
Bst6I CTCTTC 2 cut(s) 153, 530
BstDEI CTNAG 8 cut(s) 69, 192, 219, 297, 312, 354, 372, 594
BstDSI CCRYGG 1 cut(s) 60
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 5 cut(s) 62, 117, 279, 330, 444
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 3 cut(s) 82, 340, 523
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 79, 337, 520
BstMWI GCNNNNNNNGC 7 cut(s) 38, 65, 185, 359, 686, 689, 692
BstNI CCWGG 2 cut(s) 603, 677
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 528, 601, 675
BstUI CGCG 5 cut(s) 62, 117, 279, 330, 444
BstV1I GCAGC 4 cut(s) 667, 673, 676, 679
BstV2I GAAGAC 2 cut(s) 331, 372
Bsu36I CCTNAGG 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 282
BtuMI TCGCGA 1 cut(s) 444
BveI ACCTGC 1 cut(s) 519
CaiI CAGNNNCTG 1 cut(s) 311
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 128
Cfr42I CCGCGG 1 cut(s) 63
CseI GACGC 3 cut(s) 200, 268, 336
CsiI ACCWGGT 1 cut(s) 601
Csp6I GTAC 1 cut(s) 622
CviAII CATG 1 cut(s) 391
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 8 cut(s) 69, 192, 219, 297, 312, 354, 372, 594
DpnI GATC 3 cut(s) 81, 339, 522
DpnII GATC 3 cut(s) 79, 337, 520
Eam1104I CTCTTC 2 cut(s) 153, 530
EarI CTCTTC 2 cut(s) 153, 530
EciI GGCGGA 2 cut(s) 47, 137
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 316
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 90
Eco91I GGTNACC 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 601, 675
EcoT14I CCWWGG 1 cut(s) 581
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 1 cut(s) 394
FaiI YATR 6 cut(s) 392, 411, 468, 562, 564, 637
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 390
FauNDI CATATG 1 cut(s) 562
Fnu4HI GCNGC 7 cut(s) 60, 189, 681, 684, 687, 690, 693
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 7 cut(s) 60, 189, 681, 684, 687, 690, 693
GlaI GCGC 1 cut(s) 116
GluI GCNGC 7 cut(s) 60, 189, 681, 684, 687, 690, 693
HapII CCGG 2 cut(s) 290, 530
HgaI GACGC 3 cut(s) 200, 268, 336
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 394
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 5 cut(s) 88, 274, 368, 385, 449
HpaII CCGG 2 cut(s) 290, 530
HphI GGTGA 3 cut(s) 157, 439, 648
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 5 cut(s) 21, 87, 323, 505, 595
Hpy188III TCNNGA 2 cut(s) 92, 443
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 5 cut(s) 70, 119, 169, 238, 262
HpyCH4III ACNGT 4 cut(s) 286, 472, 499, 621
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 65, 185, 359, 686, 689, 692
HpyF3I CTNAG 8 cut(s) 69, 192, 219, 297, 312, 354, 372, 594
Hsp92II CATG 1 cut(s) 394
HspAI GCGC 1 cut(s) 115
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 3 cut(s) 79, 337, 520
Lsp1109I GCAGC 4 cut(s) 667, 673, 676, 679
MabI ACCWGGT 1 cut(s) 601
MaeIII GTNAC 3 cut(s) 280, 301, 427
MalI GATC 3 cut(s) 81, 339, 522
MboI GATC 3 cut(s) 79, 337, 520
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 1 cut(s) 197
MlyI GAGTC 3 cut(s) 82, 362, 379
MmeI TCCRAC 1 cut(s) 219
MseI TTAA 2 cut(s) 555, 672
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 290, 530
MspR9I CCNGG 3 cut(s) 530, 603, 677
MvaI CCWGG 2 cut(s) 603, 677
MvnI CGCG 5 cut(s) 62, 117, 279, 330, 444
MwoI GCNNNNNNNGC 7 cut(s) 38, 65, 185, 359, 686, 689, 692
NciI CCSGG 1 cut(s) 530
NdeI CATATG 1 cut(s) 562
NdeII GATC 3 cut(s) 79, 337, 520
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 2 cut(s) 130, 294
NmuCI GTSAC 3 cut(s) 280, 301, 427
NruI TCGCGA 1 cut(s) 444
PfeI GAWTC 2 cut(s) 274, 449
PkrI GCNGC 7 cut(s) 61, 190, 682, 685, 688, 691, 694
PleI GAGTC 3 cut(s) 82, 362, 379
PpsI GAGTC 3 cut(s) 82, 362, 379
PpuMI RGGWCCY 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 601, 675
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 2 cut(s) 601, 675
PspN4I GGNNCC 2 cut(s) 130, 294
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 311
RruI TCGCGA 1 cut(s) 444
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
SacI GAGCTC 1 cut(s) 318
SacII CCGCGG 1 cut(s) 63
SaqAI TTAA 2 cut(s) 555, 672
SatI GCNGC 7 cut(s) 60, 189, 681, 684, 687, 690, 693
Sau3AI GATC 3 cut(s) 79, 337, 520
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 3 cut(s) 82, 362, 379
ScrFI CCNGG 3 cut(s) 530, 603, 677
SduI GDGCHC 1 cut(s) 318
SetI ASST 6 cut(s) 39, 130, 303, 318, 513, 607
SexAI ACCWGGT 1 cut(s) 601
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 542, 587
SmoI CTYRAG 2 cut(s) 542, 587
Sse9I AATT 1 cut(s) 197
SsiI CCGC 9 cut(s) 32, 60, 62, 122, 143, 167, 186, 189, 683
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 3 cut(s) 528, 601, 675
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 4 cut(s) 286, 472, 499, 621
TaqI TCGA 2 cut(s) 459, 523
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 621
TauI GCSGC 3 cut(s) 62, 191, 686
TfiI GAWTC 2 cut(s) 274, 449
Tru1I TTAA 2 cut(s) 555, 672
Tru9I TTAA 2 cut(s) 555, 672
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 3 cut(s) 280, 301, 427
TseI GCWGC 4 cut(s) 680, 686, 689, 692
Tsp45I GTSAC 3 cut(s) 280, 301, 427
TspDTI ATGAA 2 cut(s) 426, 579
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.