Coiled-coil domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16210 |
| fragaria_vesca | FvH4_2g15950 FvH4_2g15950 FvH4_2g15950 |
| malus_domestica | MD05G1128500.v1.1 MD10G1131800.v1.1 |
| prunus_persica | Prupe.8G172600_v2.0.a1 |
| pyrus_communis | pycom05g12440 pycom10g11290 |
| rosa_chinensis | RchiOBHm_Chr6g0279491 |
| rosa_laevigata | RLG00000013143 |
| rosa_multiflora | Rmu_co8117152.1_g000001 Rmu_sc0004649.1_g000023 |
| rosa_roxburghii | Rroxscaffold_7G00188880 |
| rosa_rugosa | Rorug06G0124400 Rorug06G0124500 Rorug06G0124600 Rorug06G0124700 |
| rosa_samantha | Rh6AG233900 Rh6BG238100 Rh6CG240200 Rh6DG231800 |
| rosa_wichuraiana | Rw6G020400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 7 cut(s) | 84, 91, 117, 141, 143, 156, 208 |
| AccIII | TCCGGA | 1 cut(s) | 529 |
| AclWI | GGATC | 3 cut(s) | 280, 293, 528 |
| AcoI | YGGCCR | 2 cut(s) | 144, 393 |
| AcyI | GRCGYC | 1 cut(s) | 548 |
| AfaI | GTAC | 2 cut(s) | 110, 391 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 217 |
| AgsI | TTSAA | 1 cut(s) | 566 |
| AjnI | CCWGG | 1 cut(s) | 601 |
| AluBI | AGCT | 9 cut(s) | 57, 179, 223, 238, 316, 510, 572, 577, 643 |
| AluI | AGCT | 9 cut(s) | 57, 179, 223, 238, 316, 510, 572, 577, 643 |
| Alw21I | GWGCWC | 3 cut(s) | 59, 240, 579 |
| Alw26I | GTCTC | 1 cut(s) | 141 |
| AlwI | GGATC | 3 cut(s) | 280, 293, 528 |
| Ama87I | CYCGRG | 1 cut(s) | 239 |
| Aor13HI | TCCGGA | 1 cut(s) | 529 |
| AoxI | GGCC | 3 cut(s) | 144, 183, 393 |
| ApeKI | GCWGC | 2 cut(s) | 129, 188 |
| AscI | GGCGCGCC | 1 cut(s) | 206 |
| AspLEI | GCGC | 8 cut(s) | 75, 84, 91, 117, 143, 156, 208, 210 |
| AsuC2I | CCSGG | 1 cut(s) | 290 |
| AsuHPI | GGTGA | 2 cut(s) | 295, 382 |
| AvaI | CYCGRG | 1 cut(s) | 239 |
| BamHI | GGATCC | 1 cut(s) | 285 |
| BanII | GRGCYC | 4 cut(s) | 49, 59, 240, 579 |
| Bbv12I | GWGCWC | 3 cut(s) | 59, 240, 579 |
| BbvCI | CCTCAGC | 2 cut(s) | 180, 317 |
| BbvI | GCAGC | 2 cut(s) | 141, 175 |
| BccI | CCATC | 2 cut(s) | 7, 412 |
| BceAI | ACGGC | 2 cut(s) | 372, 408 |
| BciT130I | CCWGG | 1 cut(s) | 603 |
| BcnI | CCSGG | 1 cut(s) | 290 |
| BcoDI | GTCTC | 1 cut(s) | 141 |
| BfaI | CTAG | 1 cut(s) | 42 |
| BisI | GCNGC | 5 cut(s) | 130, 144, 186, 189, 345 |
| BlpI | GCTNAGC | 1 cut(s) | 573 |
| BlsI | GCNGC | 5 cut(s) | 131, 145, 187, 190, 346 |
| BmcAI | AGTACT | 1 cut(s) | 110 |
| Bme1390I | CCNGG | 2 cut(s) | 290, 603 |
| BmeT110I | CYCGRG | 1 cut(s) | 239 |
| BmiI | GGNNCC | 2 cut(s) | 287, 294 |
| BmrFI | CCNGG | 2 cut(s) | 290, 603 |
| BmsI | GCATC | 1 cut(s) | 535 |
| BpmI | CTGGAG | 1 cut(s) | 245 |
| Bpu10I | CCTNAGC | 2 cut(s) | 180, 317 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 573 |
| BpuEI | CTTGAG | 2 cut(s) | 527, 572 |
| BpuMI | CCSGG | 1 cut(s) | 290 |
| BsaBI | GATNNNNATC | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 1 cut(s) | 548 |
| BsaJI | CCNNGG | 4 cut(s) | 123, 201, 306, 396 |
| BsaWI | WCCGGW | 1 cut(s) | 529 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 92, 122, 344, 374, 392, 422 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 217 |
| Bse118I | RCCGGY | 1 cut(s) | 514 |
| Bse1I | ACTGG | 1 cut(s) | 116 |
| Bse8I | GATNNNNATC | 1 cut(s) | 525 |
| BseAI | TCCGGA | 1 cut(s) | 529 |
| BseBI | CCWGG | 1 cut(s) | 603 |
| BseDI | CCNNGG | 4 cut(s) | 123, 201, 306, 396 |
| BseGI | GGATG | 2 cut(s) | 423, 526 |
| BseJI | GATNNNNATC | 1 cut(s) | 525 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 217 |
| BseMII | CTCAG | 4 cut(s) | 171, 308, 564, 675 |
| BseNI | ACTGG | 1 cut(s) | 116 |
| BsePI | GCGCGC | 1 cut(s) | 206 |
| BseRI | GAGGAG | 8 cut(s) | 50, 116, 242, 413, 416, 419, 491, 550 |
| BseX3I | CGGCCG | 1 cut(s) | 393 |
| BseXI | GCAGC | 2 cut(s) | 141, 175 |
| Bsh1236I | CGCG | 7 cut(s) | 84, 91, 117, 141, 143, 156, 208 |
| Bsh1285I | CGRYCG | 2 cut(s) | 63, 396 |
| BshFI | GGCC | 3 cut(s) | 146, 185, 395 |
| BsiEI | CGRYCG | 2 cut(s) | 63, 396 |
| BsiHKAI | GWGCWC | 3 cut(s) | 59, 240, 579 |
| BsiHKCI | CYCGRG | 1 cut(s) | 239 |
| BsiSI | CCGG | 3 cut(s) | 290, 515, 530 |
| BsiWI | CGTACG | 1 cut(s) | 389 |
| BslFI | GGGAC | 1 cut(s) | 458 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 217 |
| BsmAI | GTCTC | 1 cut(s) | 141 |
| BsmFI | GGGAC | 1 cut(s) | 458 |
| BsnI | GGCC | 3 cut(s) | 146, 185, 395 |
| BsoBI | CYCGRG | 1 cut(s) | 239 |
| Bsp1286I | GDGCHC | 4 cut(s) | 49, 59, 240, 579 |
| Bsp13I | TCCGGA | 1 cut(s) | 529 |
| Bsp143I | GATC | 3 cut(s) | 285, 453, 520 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 573 |
| BspANI | GGCC | 3 cut(s) | 146, 185, 395 |
| BspCNI | CTCAG | 4 cut(s) | 172, 309, 565, 676 |
| BspEI | TCCGGA | 1 cut(s) | 529 |
| BspFNI | CGCG | 7 cut(s) | 84, 91, 117, 141, 143, 156, 208 |
| BspLI | GGNNCC | 2 cut(s) | 287, 294 |
| BspPI | GGATC | 3 cut(s) | 280, 293, 528 |
| BspQI | GCTCTTC | 1 cut(s) | 47 |
| BsrFI | RCCGGY | 1 cut(s) | 514 |
| BsrI | ACTGG | 1 cut(s) | 116 |
| BssAI | RCCGGY | 1 cut(s) | 514 |
| BssECI | CCNNGG | 4 cut(s) | 123, 201, 306, 396 |
| BssHII | GCGCGC | 1 cut(s) | 206 |
| BssMI | GATC | 3 cut(s) | 285, 453, 520 |
| BssNI | GRCGYC | 1 cut(s) | 548 |
| Bst2UI | CCWGG | 1 cut(s) | 603 |
| Bst4CI | ACNGT | 1 cut(s) | 499 |
| Bst6I | CTCTTC | 2 cut(s) | 47, 588 |
| BstACI | GRCGYC | 1 cut(s) | 548 |
| BstC8I | GCNNGC | 5 cut(s) | 177, 193, 208, 342, 512 |
| BstDEI | CTNAG | 4 cut(s) | 180, 317, 573, 684 |
| BstEII | GGTNACC | 1 cut(s) | 301 |
| BstF5I | GGATG | 2 cut(s) | 423, 526 |
| BstFNI | CGCG | 7 cut(s) | 84, 91, 117, 141, 143, 156, 208 |
| BstHHI | GCGC | 8 cut(s) | 75, 84, 91, 117, 143, 156, 208, 210 |
| BstKTI | GATC | 3 cut(s) | 288, 456, 523 |
| BstMAI | GTCTC | 1 cut(s) | 141 |
| BstMBI | GATC | 3 cut(s) | 285, 453, 520 |
| BstMCI | CGRYCG | 2 cut(s) | 63, 396 |
| BstNI | CCWGG | 1 cut(s) | 603 |
| BstPI | GGTNACC | 1 cut(s) | 301 |
| BstSCI | CCNGG | 2 cut(s) | 288, 601 |
| BstUI | CGCG | 7 cut(s) | 84, 91, 117, 141, 143, 156, 208 |
| BstV1I | GCAGC | 2 cut(s) | 141, 175 |
| BstX2I | RGATCY | 1 cut(s) | 285 |
| BstYI | RGATCY | 1 cut(s) | 285 |
| BstZI | CGGCCG | 1 cut(s) | 393 |
| BsuRI | GGCC | 3 cut(s) | 146, 185, 395 |
| BtsCI | GGATG | 2 cut(s) | 423, 526 |
| Cac8I | GCNNGC | 5 cut(s) | 177, 193, 208, 342, 512 |
| CfoI | GCGC | 8 cut(s) | 75, 84, 91, 117, 143, 156, 208, 210 |
| Cfr10I | RCCGGY | 1 cut(s) | 514 |
| CseI | GACGC | 1 cut(s) | 537 |
| CsiI | ACCWGGT | 1 cut(s) | 601 |
| Csp6I | GTAC | 2 cut(s) | 109, 390 |
| CviAII | CATG | 1 cut(s) | 631 |
| CviQI | GTAC | 2 cut(s) | 109, 390 |
| DdeI | CTNAG | 4 cut(s) | 180, 317, 573, 684 |
| DpnI | GATC | 3 cut(s) | 287, 455, 522 |
| DpnII | GATC | 3 cut(s) | 285, 453, 520 |
| EaeI | YGGCCR | 2 cut(s) | 144, 393 |
| EagI | CGGCCG | 1 cut(s) | 393 |
| Eam1104I | CTCTTC | 2 cut(s) | 47, 588 |
| EarI | CTCTTC | 2 cut(s) | 47, 588 |
| EciI | GGCGGA | 4 cut(s) | 47, 233, 326, 350 |
| Ecl136II | GAGCTC | 3 cut(s) | 57, 238, 577 |
| EclXI | CGGCCG | 1 cut(s) | 393 |
| Eco24I | GRGCYC | 4 cut(s) | 49, 59, 240, 579 |
| Eco52I | CGGCCG | 1 cut(s) | 393 |
| Eco53kI | GAGCTC | 3 cut(s) | 57, 238, 577 |
| Eco88I | CYCGRG | 1 cut(s) | 239 |
| Eco91I | GGTNACC | 1 cut(s) | 301 |
| EcoICRI | GAGCTC | 3 cut(s) | 57, 238, 577 |
| EcoO65I | GGTNACC | 1 cut(s) | 301 |
| EcoRII | CCWGG | 1 cut(s) | 601 |
| EcoT38I | GRGCYC | 4 cut(s) | 49, 59, 240, 579 |
| FaeI | CATG | 1 cut(s) | 634 |
| FaiI | YATR | 3 cut(s) | 411, 632, 646 |
| FaqI | GGGAC | 1 cut(s) | 458 |
| FatI | CATG | 1 cut(s) | 630 |
| Fnu4HI | GCNGC | 5 cut(s) | 130, 144, 186, 189, 345 |
| FokI | GGATG | 2 cut(s) | 430, 513 |
| FriOI | GRGCYC | 4 cut(s) | 49, 59, 240, 579 |
| Fsp4HI | GCNGC | 5 cut(s) | 130, 144, 186, 189, 345 |
| FspBI | CTAG | 1 cut(s) | 42 |
| GlaI | GCGC | 8 cut(s) | 74, 83, 90, 116, 142, 155, 207, 209 |
| GluI | GCNGC | 5 cut(s) | 130, 144, 186, 189, 345 |
| GsuI | CTGGAG | 1 cut(s) | 245 |
| HaeIII | GGCC | 3 cut(s) | 146, 185, 395 |
| HapII | CCGG | 3 cut(s) | 290, 515, 530 |
| HgaI | GACGC | 1 cut(s) | 537 |
| HhaI | GCGC | 8 cut(s) | 75, 84, 91, 117, 143, 156, 208, 210 |
| Hin1I | GRCGYC | 1 cut(s) | 548 |
| Hin1II | CATG | 1 cut(s) | 634 |
| Hin6I | GCGC | 8 cut(s) | 73, 82, 89, 115, 141, 154, 206, 208 |
| HinP1I | GCGC | 8 cut(s) | 73, 82, 89, 115, 141, 154, 206, 208 |
| HinfI | GANTC | 2 cut(s) | 439, 449 |
| HpaII | CCGG | 3 cut(s) | 290, 515, 530 |
| HphI | GGTGA | 2 cut(s) | 295, 382 |
| Hpy166II | GTNNAC | 1 cut(s) | 22 |
| Hpy188I | TCNGA | 3 cut(s) | 51, 275, 297 |
| Hpy188III | TCNNGA | 4 cut(s) | 241, 443, 530, 659 |
| Hpy8I | GTNNAC | 1 cut(s) | 22 |
| Hpy99I | CGWCG | 1 cut(s) | 553 |
| HpyAV | CCTTC | 6 cut(s) | 91, 226, 238, 262, 292, 322 |
| HpyCH4III | ACNGT | 1 cut(s) | 499 |
| HpyF3I | CTNAG | 4 cut(s) | 180, 317, 573, 684 |
| Hsp92I | GRCGYC | 1 cut(s) | 548 |
| Hsp92II | CATG | 1 cut(s) | 634 |
| HspAI | GCGC | 8 cut(s) | 73, 82, 89, 115, 141, 154, 206, 208 |
| Kpn2I | TCCGGA | 1 cut(s) | 529 |
| Kzo9I | GATC | 3 cut(s) | 285, 453, 520 |
| LguI | GCTCTTC | 1 cut(s) | 47 |
| LmnI | GCTCC | 7 cut(s) | 79, 103, 220, 235, 313, 337, 582 |
| LpnPI | CCDG | 9 cut(s) | 97, 209, 303, 326, 528, 543, 588, 615, 662 |
| Lsp1109I | GCAGC | 2 cut(s) | 141, 175 |
| LweI | GCATC | 1 cut(s) | 535 |
| MabI | ACCWGGT | 1 cut(s) | 601 |
| MaeI | CTAG | 1 cut(s) | 42 |
| MaeIII | GTNAC | 1 cut(s) | 301 |
| MalI | GATC | 3 cut(s) | 287, 455, 522 |
| MboI | GATC | 3 cut(s) | 285, 453, 520 |
| MflI | RGATCY | 1 cut(s) | 285 |
| MhlI | GDGCHC | 4 cut(s) | 49, 59, 240, 579 |
| MluCI | AATT | 1 cut(s) | 582 |
| MmeI | TCCRAC | 2 cut(s) | 253, 330 |
| MroI | TCCGGA | 1 cut(s) | 529 |
| MseI | TTAA | 1 cut(s) | 555 |
| MspA1I | CMGCKG | 1 cut(s) | 188 |
| MspI | CCGG | 3 cut(s) | 290, 515, 530 |
| MspR9I | CCNGG | 2 cut(s) | 290, 603 |
| MvaI | CCWGG | 1 cut(s) | 603 |
| MvnI | CGCG | 7 cut(s) | 84, 91, 117, 141, 143, 156, 208 |
| NciI | CCSGG | 1 cut(s) | 290 |
| NdeII | GATC | 3 cut(s) | 285, 453, 520 |
| NlaIII | CATG | 1 cut(s) | 634 |
| NlaIV | GGNNCC | 2 cut(s) | 287, 294 |
| NmeAIII | GCCGAG | 5 cut(s) | 94, 148, 193, 226, 421 |
| NmuCI | GTSAC | 1 cut(s) | 301 |
| PaeR7I | CTCGAG | 1 cut(s) | 239 |
| PalAI | GGCGCGCC | 1 cut(s) | 206 |
| PauI | GCGCGC | 1 cut(s) | 206 |
| PciSI | GCTCTTC | 1 cut(s) | 47 |
| PfeI | GAWTC | 2 cut(s) | 439, 449 |
| Pfl23II | CGTACG | 1 cut(s) | 389 |
| PkrI | GCNGC | 5 cut(s) | 131, 145, 187, 190, 346 |
| Psp124BI | GAGCTC | 3 cut(s) | 59, 240, 579 |
| Psp6I | CCWGG | 1 cut(s) | 601 |
| PspEI | GGTNACC | 1 cut(s) | 301 |
| PspGI | CCWGG | 1 cut(s) | 601 |
| PspLI | CGTACG | 1 cut(s) | 389 |
| PspN4I | GGNNCC | 2 cut(s) | 287, 294 |
| PsuI | RGATCY | 1 cut(s) | 285 |
| PteI | GCGCGC | 1 cut(s) | 206 |
| RsaI | GTAC | 2 cut(s) | 110, 391 |
| RsaNI | GTAC | 2 cut(s) | 109, 390 |
| SacI | GAGCTC | 3 cut(s) | 59, 240, 579 |
| SapI | GCTCTTC | 1 cut(s) | 47 |
| SaqAI | TTAA | 1 cut(s) | 555 |
| SatI | GCNGC | 5 cut(s) | 130, 144, 186, 189, 345 |
| Sau3AI | GATC | 3 cut(s) | 285, 453, 520 |
| ScaI | AGTACT | 1 cut(s) | 110 |
| ScrFI | CCNGG | 2 cut(s) | 290, 603 |
| SduI | GDGCHC | 4 cut(s) | 49, 59, 240, 579 |
| SexAI | ACCWGGT | 1 cut(s) | 601 |
| SfaNI | GCATC | 1 cut(s) | 535 |
| Sfr274I | CTCGAG | 1 cut(s) | 239 |
| SgsI | GGCGCGCC | 1 cut(s) | 206 |
| SlaI | CTCGAG | 1 cut(s) | 239 |
| SmlI | CTYRAG | 3 cut(s) | 239, 542, 587 |
| SmoI | CTYRAG | 3 cut(s) | 239, 542, 587 |
| Sse9I | AATT | 1 cut(s) | 582 |
| SspMI | CTAG | 1 cut(s) | 42 |
| SstI | GAGCTC | 3 cut(s) | 59, 240, 579 |
| StyD4I | CCNGG | 2 cut(s) | 288, 601 |
| TaaI | ACNGT | 1 cut(s) | 499 |
| TaqI | TCGA | 5 cut(s) | 59, 240, 362, 452, 459 |
| TaqII | GACCGA | 1 cut(s) | 77 |
| TasI | AATT | 1 cut(s) | 582 |
| TatI | WGTACW | 1 cut(s) | 108 |
| TauI | GCSGC | 3 cut(s) | 146, 188, 347 |
| TfiI | GAWTC | 2 cut(s) | 439, 449 |
| Tru1I | TTAA | 1 cut(s) | 555 |
| Tru9I | TTAA | 1 cut(s) | 555 |
| TseFI | GTSAC | 1 cut(s) | 301 |
| TseI | GCWGC | 2 cut(s) | 129, 188 |
| Tsp45I | GTSAC | 1 cut(s) | 301 |
| XhoI | CTCGAG | 1 cut(s) | 239 |
| XspI | CTAG | 1 cut(s) | 42 |
| ZrmI | AGTACT | 1 cut(s) | 110 |