Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008369

Physical Location & Seq

Genomic Coordinates Reverse (-)

17230862 .. 17232273

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTCATCGTTTCGCAGCGATTCCTCAGGAGCAGCAGAAGCCGTAGCCAATATCGAAGATCTCCTGACTCAGATCCTTGTGTCGGTGCCATTACGATCACTTGCTCGTTTCAAGTGCATCTCCACGCATTGGCGCTCTCTTATCTCCGACCTCCACACCGTCAAGAACCCCAAGATCTCGACTTTCTTCCCTAGTAAATTCCAAGACGAGTCCTACGAGTCCATCCCTCTTGGTAACAGTCAAATCCCATCTTGTTGGAATCCCCTCAAAATCCTTAACAATTCAATCCCTGATGGATCCGAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCCTTCTCTGCCTTTGCGTGACAACGAAAGAAAGAAGACATGATGTCGTATACGTTTTTAATCCCACAACCAACCAATTCCGGGCTATTTCTTCTCCAAGGGTTAGGGAAAACATGTCCTTATCTGCTTTTACACATTATGCTTTGGCTTTTGATCCTTGCAAATCACCTCATTACAAGGTGATCTGCGTGAGTAACTTCTTCTATTGTTATGACAGGGGGCACCACCAAATAGATATATATTCATCTGAGACTGGAGAGTGGAAGCATCTCGATACTCCTTTCTTCCCAAGCCCCTTGCACTTTAACAGGATCAGGGAAGGCGCCGTATACTGCAACGGCGCAGTTCATTGGATGAGAAACGTAGGGGGAAACTTGTCATTCAGTGATGCTAGGAATGAATTCATAAGACACGAAACTGATGTGCTGCACTACTTTGACATAGGCCAAGAACGTCTGGGACTCGTGTCTGCTACCCCTCCTATCCCTTTGGTTGTCAGAAACATTCCGTTAAAGGATTCCGGTAAGTCTCCCACTGAATGGCCGACATTCGATCAAAGATATTTTGGGGAGTCTGGTGGCCATTTGTATTTAATTGAGACTTATAAGCATTGTAAGACCCAATTTGATGTGATGGAGATGGAGAGGGACTACTCTGGCTGGTTTGTCAAGTATCATGTTGATCTTAATCCATTATTCACAGCTCTTCCTAGTTCGAATGATTCTGTCATCTTGTGCCTTTCTCAAGAGAAGGAAAAACATAATGAGGAGGATTCTTCAGCTGATCTTTTGTTGCATATGCCAGGTAAGGTCATATCTTATAATCTGAGGAATAAGACCTTCAAGACATCTGTTGTTGAGTCGGCCAATGAAAAACTTTTTTTTGATATAGATAGTCGATTCTTTTGTAGTGAGGTTGTTATGTATCCTTACATGGAGAGTTTAGCTTGTGTGGGACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ccdc124

Protein Analysis

430

Amino Acids

49.2

Weight (kDa)

6.28

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	98 - 230	7e-07	F-box associated beta propeller domain
FBA_1	PF07734	99 - 270	1.9e-17	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	101 - 231	9e-07	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16210
fragaria_vesca	FvH4_2g15950 FvH4_2g15950 FvH4_2g15950
malus_domestica	MD05G1128500.v1.1 MD10G1131800.v1.1
prunus_persica	Prupe.8G172600_v2.0.a1
pyrus_communis	pycom05g12440 pycom10g11290
rosa_chinensis	RchiOBHm_Chr6g0279491
rosa_laevigata	RLG00000013143
rosa_multiflora	Rmu_co8117152.1_g000001 Rmu_sc0004649.1_g000023
rosa_roxburghii	Rroxscaffold_7G00188880
rosa_rugosa	Rorug06G0124400 Rorug06G0124500 Rorug06G0124600 Rorug06G0124700
rosa_samantha	Rh6AG233900 Rh6BG238100 Rh6CG240200 Rh6DG231800
rosa_wichuraiana	Rw6G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	936, 1152
AccB1I	GGYRCC	3 cut(s)	85, 552, 653
AccB7I	CCANNNNNTGG	2 cut(s)	129, 870
AccI	GTMKAC	2 cut(s)	381, 660
AclWI	GGATC	5 cut(s)	67, 291, 304, 479, 650
AcoI	YGGCCR	3 cut(s)	872, 910, 1194
AcsI	RAATTY	2 cut(s)	197, 731
AcuI	CTGAAG	2 cut(s)	299, 1092
AcyI	GRCGYC	1 cut(s)	654
AfiI	CCNNNNNNNGG	5 cut(s)	82, 129, 306, 412, 870
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	112, 285, 1174
AhdI	GACNNNNNGTC	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	1132
AluBI	AGCT	3 cut(s)	1034, 1112, 1277
AluI	AGCT	3 cut(s)	1034, 1112, 1277
Alw26I	GTCTC	3 cut(s)	575, 864, 923
AlwI	GGATC	5 cut(s)	67, 291, 304, 479, 650
AoxI	GGCC	5 cut(s)	328, 775, 872, 910, 1194
ApeKI	GCWGC	3 cut(s)	15, 32, 757
ApoI	RAATTY	2 cut(s)	197, 731
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	3 cut(s)	135, 656, 674
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	489, 523
AsuII	TTCGAA	1 cut(s)	1046
AxyI	CCTNAGG	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	912
BamHI	GGATCC	1 cut(s)	296
BanI	GGYRCC	3 cut(s)	85, 552, 653
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	27, 44, 744
BccI	CCATC	5 cut(s)	230, 256, 287, 958, 964
BceAI	ACGGC	3 cut(s)	26, 641, 685
BciT130I	CCWGG	1 cut(s)	1134
BciVI	GTATCC	1 cut(s)	1266
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	3 cut(s)	575, 864, 923
BfaI	CTAG	3 cut(s)	192, 723, 1041
BfoI	RGCGCY	2 cut(s)	136, 657
BfuI	GTATCC	1 cut(s)	1266
BglII	AGATCT	2 cut(s)	58, 174
BisI	GCNGC	3 cut(s)	16, 33, 758
BlsI	GCNGC	3 cut(s)	17, 34, 759
Bme1390I	CCNGG	2 cut(s)	413, 1134
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmiI	GGNNCC	4 cut(s)	87, 298, 554, 655
BmrFI	CCNGG	2 cut(s)	413, 1134
BmsI	GCATC	3 cut(s)	126, 607, 709
BoxI	GACNNNNGTC	1 cut(s)	796
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	1046
BpuEI	CTTGAG	1 cut(s)	1059
BpuMI	CCSGG	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaHI	GRCGYC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 129, 306, 412, 870
Bse1I	ACTGG	1 cut(s)	589
Bse21I	CCTNAGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	1017
BseBI	CCWGG	1 cut(s)	1134
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	222, 690
BseJI	GATNNNNATC	1 cut(s)	1017
BseLI	CCNNNNNNNGG	5 cut(s)	82, 129, 306, 412, 870
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	4 cut(s)	39, 83, 570, 1148
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	1112
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	27, 44, 744
BsgI	GTGCAG	1 cut(s)	743
BshFI	GGCC	5 cut(s)	330, 777, 874, 912, 1196
BshNI	GGYRCC	3 cut(s)	85, 552, 653
BsiSI	CCGG	2 cut(s)	412, 852
BslFI	GGGAC	2 cut(s)	804, 992
BslI	CCNNNNNNNGG	5 cut(s)	82, 129, 306, 412, 870
BsmAI	GTCTC	3 cut(s)	575, 864, 923
BsmFI	GGGAC	2 cut(s)	804, 992
BsnI	GGCC	5 cut(s)	330, 777, 874, 912, 1196
Bsp119I	TTCGAA	1 cut(s)	1046
Bsp1286I	GDGCHC	1 cut(s)	555
BspANI	GGCC	5 cut(s)	330, 777, 874, 912, 1196
BspCNI	CTCAG	4 cut(s)	38, 82, 571, 1149
BspLI	GGNNCC	4 cut(s)	87, 298, 554, 655
BspPI	GGATC	5 cut(s)	67, 291, 304, 479, 650
BspQI	GCTCTTC	1 cut(s)	1041
BspT104I	TTCGAA	1 cut(s)	1046
BspT107I	GGYRCC	3 cut(s)	85, 552, 653
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	428
BssNAI	GTATAC	2 cut(s)	382, 661
BssNI	GRCGYC	1 cut(s)	654
BssSI	CACGAG	1 cut(s)	794
BssT1I	CCWWGG	1 cut(s)	428
Bst1107I	GTATAC	2 cut(s)	382, 661
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	1 cut(s)	1134
Bst4CI	ACNGT	2 cut(s)	160, 239
Bst6I	CTCTTC	1 cut(s)	1041
BstACI	GRCGYC	1 cut(s)	654
BstBI	TTCGAA	1 cut(s)	1046
BstDEI	CTNAG	4 cut(s)	25, 69, 579, 1157
BstF5I	GGATG	2 cut(s)	222, 690
BstH2I	RGCGCY	2 cut(s)	136, 657
BstHHI	GCGC	3 cut(s)	135, 656, 674
BstMAI	GTCTC	3 cut(s)	575, 864, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	1134
BstNSI	RCATGY	1 cut(s)	448
BstPAI	GACNNNNGTC	1 cut(s)	796
BstSCI	CCNGG	2 cut(s)	411, 1132
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	27, 44, 744
BstV2I	GAAGAC	1 cut(s)	373
BstX2I	RGATCY	4 cut(s)	58, 72, 174, 296
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	4 cut(s)	58, 72, 174, 296
BstZ17I	GTATAC	2 cut(s)	382, 661
Bsu36I	CCTNAGG	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	1266
BsuRI	GGCC	5 cut(s)	330, 777, 874, 912, 1196
BtsCI	GGATG	2 cut(s)	222, 690
BtsIMutI	CAGTG	2 cut(s)	721, 864
CfoI	GCGC	3 cut(s)	135, 656, 674
CviAII	CATG	4 cut(s)	371, 445, 1007, 1264
DdeI	CTNAG	4 cut(s)	25, 69, 579, 1157
DinI	GGCGCC	1 cut(s)	655
DriI	GACNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	3 cut(s)	872, 910, 1194
Eam1104I	CTCTTC	1 cut(s)	1041
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	1041
Eco130I	CCWWGG	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	299, 1092
Eco81I	CCTNAGG	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	1132
EcoT14I	CCWWGG	1 cut(s)	428
EgeI	GGCGCC	1 cut(s)	655
EheI	GGCGCC	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	4 cut(s)	374, 448, 1010, 1267
FaqI	GGGAC	2 cut(s)	804, 992
FatI	CATG	4 cut(s)	370, 444, 1006, 1263
FauNDI	CATATG	1 cut(s)	1128
FblI	GTMKAC	2 cut(s)	381, 660
Fnu4HI	GCNGC	3 cut(s)	16, 33, 758
FokI	GGATG	2 cut(s)	209, 697
Fsp4HI	GCNGC	3 cut(s)	16, 33, 758
FspBI	CTAG	3 cut(s)	192, 723, 1041
GlaI	GCGC	3 cut(s)	134, 655, 673
GluI	GCNGC	3 cut(s)	16, 33, 758
GsuI	CTGGAG	1 cut(s)	606
HaeII	RGCGCY	2 cut(s)	136, 657
HaeIII	GGCC	5 cut(s)	330, 777, 874, 912, 1196
HapII	CCGG	2 cut(s)	412, 852
HhaI	GCGC	3 cut(s)	135, 656, 674
Hin1I	GRCGYC	1 cut(s)	654
Hin1II	CATG	4 cut(s)	374, 448, 1010, 1267
Hin6I	GCGC	3 cut(s)	133, 654, 672
HinP1I	GCGC	3 cut(s)	133, 654, 672
HpaII	CCGG	2 cut(s)	412, 852
HphI	GGTGA	2 cut(s)	489, 523
Hpy166II	GTNNAC	2 cut(s)	382, 661
Hpy188I	TCNGA	6 cut(s)	72, 148, 301, 580, 830, 1158
Hpy188III	TCNNGA	7 cut(s)	27, 64, 163, 178, 602, 1076, 1174
Hpy8I	GTNNAC	2 cut(s)	382, 661
HpyAV	CCTTC	4 cut(s)	344, 644, 1075, 1180
HpyCH4III	ACNGT	2 cut(s)	160, 239
HpyCH4IV	ACGT	3 cut(s)	384, 693, 784
HpyCH4V	TGCA	7 cut(s)	117, 324, 492, 631, 666, 760, 1126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	4 cut(s)	25, 69, 579, 1157
HpySE526I	ACGT	3 cut(s)	384, 693, 784
Hsp92I	GRCGYC	1 cut(s)	654
Hsp92II	CATG	4 cut(s)	374, 448, 1010, 1267
HspAI	GCGC	3 cut(s)	133, 654, 672
KasI	GGCGCC	1 cut(s)	653
LguI	GCTCTTC	1 cut(s)	1041
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	3 cut(s)	27, 44, 744
LweI	GCATC	3 cut(s)	126, 607, 709
MaeI	CTAG	3 cut(s)	192, 723, 1041
MaeII	ACGT	3 cut(s)	384, 693, 784
MaeIII	GTNAC	3 cut(s)	233, 349, 524
MboII	GAAGA	9 cut(s)	68, 178, 305, 378, 414, 523, 607, 1028, 1098
MflI	RGATCY	4 cut(s)	58, 72, 174, 296
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	6 cut(s)	197, 280, 407, 731, 924, 953
MluNI	TGGCCA	1 cut(s)	912
Mly113I	GGCGCC	1 cut(s)	654
MlyI	GAGTC	6 cut(s)	61, 218, 227, 786, 911, 1199
MmeI	TCCRAC	2 cut(s)	171, 236
Mox20I	TGGCCA	1 cut(s)	912
MroXI	GAANNNNTTC	1 cut(s)	731
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	6 cut(s)	276, 390, 636, 842, 923, 1017
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	1112
MspI	CCGG	2 cut(s)	412, 852
MspR9I	CCNGG	2 cut(s)	413, 1134
MvaI	CCWGG	1 cut(s)	1134
MwoI	GCNNNNNNNGC	1 cut(s)	38
NarI	GGCGCC	1 cut(s)	654
NciI	CCSGG	1 cut(s)	413
NdeI	CATATG	1 cut(s)	1128
NlaIII	CATG	4 cut(s)	374, 448, 1010, 1267
NlaIV	GGNNCC	4 cut(s)	87, 298, 554, 655
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	1046
PciI	ACATGT	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	1041
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	7 cut(s)	20, 259, 310, 848, 1052, 1103, 1230
PflMI	CCANNNNNTGG	2 cut(s)	129, 870
PkrI	GCNGC	3 cut(s)	17, 34, 759
PleI	GAGTC	6 cut(s)	61, 217, 226, 786, 910, 1198
PluTI	GGCGCC	1 cut(s)	657
PpsI	GAGTC	6 cut(s)	61, 217, 226, 786, 910, 1198
PscI	ACATGT	1 cut(s)	444
PshAI	GACNNNNGTC	1 cut(s)	796
PsiI	TTATAA	2 cut(s)	936, 1152
Psp6I	CCWGG	1 cut(s)	1132
PspGI	CCWGG	1 cut(s)	1132
PspN4I	GGNNCC	4 cut(s)	87, 298, 554, 655
PsuI	RGATCY	4 cut(s)	58, 72, 174, 296
PvuII	CAGCTG	1 cut(s)	1112
SapI	GCTCTTC	1 cut(s)	1041
SaqAI	TTAA	6 cut(s)	276, 390, 636, 842, 923, 1017
SatI	GCNGC	3 cut(s)	16, 33, 758
SchI	GAGTC	6 cut(s)	61, 218, 227, 786, 911, 1199
ScrFI	CCNGG	2 cut(s)	413, 1134
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	3 cut(s)	126, 607, 709
SfoI	GGCGCC	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	1046
SmlI	CTYRAG	1 cut(s)	1074
SmoI	CTYRAG	1 cut(s)	1074
Sse9I	AATT	6 cut(s)	197, 280, 407, 731, 924, 953
SspDI	GGCGCC	1 cut(s)	653
SspMI	CTAG	3 cut(s)	192, 723, 1041
StyD4I	CCNGG	2 cut(s)	411, 1132
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	160, 239
TaiI	ACGT	3 cut(s)	387, 696, 787
TaqI	TCGA	6 cut(s)	54, 179, 603, 882, 1046, 1228
TasI	AATT	6 cut(s)	197, 280, 407, 731, 924, 953
TfiI	GAWTC	7 cut(s)	20, 259, 310, 848, 1052, 1103, 1230
Tru1I	TTAA	6 cut(s)	276, 390, 636, 842, 923, 1017
Tru9I	TTAA	6 cut(s)	276, 390, 636, 842, 923, 1017
TscAI	CASTG	2 cut(s)	721, 871
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	15, 32, 757
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	5 cut(s)	564, 668, 724, 744, 1215
TspGWI	ACGGA	1 cut(s)	828
TspRI	CASTG	2 cut(s)	721, 871
Van91I	CCANNNNNTGG	2 cut(s)	129, 870
XapI	RAATTY	2 cut(s)	197, 731
XceI	RCATGY	1 cut(s)	448
XmiI	GTMKAC	2 cut(s)	381, 660
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	3 cut(s)	192, 723, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.