Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8117152.1

Orthogroup ID

OG0008369

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 566

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8117152.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 565 bp

atgccgccgaagaagatgggcgtgaacagcaaggcggaagccgctagggctcggcggagcgccaccgaagccgagcgcaaggagagcgaggctcgccacaaggaggagcagtactggcgcgaagccgagggcagcaaatcacgcgccgccaagaagcgcgaggaggaggccgacaagcgagccgaggccgccgctcgcaaggccgaggcgcgccgattggccgagctggaggagaaggagctggagaagatggccaagaagcctgacaagaaggtcagccgcgtcgcgatcccggtcccgaaggtgacggaggccgagctgaggaagcgccgggaggaggaggcggcggcgatggagaagaagtcggaggagtcgaagaagaagcagacgcgcacggcggcggaggaggagtacgagagaatggtgcttgtgtcgaacacgaaccgtgatgattcgactattgaggcgaggtcggtggaggaagcgattgctcagatgtcggtggcggagcccttgccggtggatcgccaccccgagaggaggctcaaggcttcctttaaggtgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ccdc124

Protein Analysis

188

Amino Acids

21.54

Weight (kDa)

9.45

Isoelectric Point (pI)

74.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16210
fragaria_vesca	FvH4_2g15950 FvH4_2g15950 FvH4_2g15950
malus_domestica	MD05G1128500.v1.1 MD10G1131800.v1.1
prunus_persica	Prupe.8G172600_v2.0.a1
pyrus_communis	pycom05g12440 pycom10g11290
rosa_chinensis	RchiOBHm_Chr6g0279491
rosa_laevigata	RLG00000013143
rosa_multiflora	Rmu_co8117152.1_g000001 Rmu_sc0004649.1_g000023
rosa_roxburghii	Rroxscaffold_7G00188880
rosa_rugosa	Rorug06G0124400 Rorug06G0124500 Rorug06G0124600 Rorug06G0124700
rosa_samantha	Rh6AG233900 Rh6BG238100 Rh6CG240200 Rh6DG231800
rosa_wichuraiana	Rw6G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	194
AccII	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
AclWI	GGATC	2 cut(s)	283, 531
AcoI	YGGCCR	2 cut(s)	219, 252
AfaI	GTAC	2 cut(s)	113, 413
AfiI	CCNNNNNNNGG	4 cut(s)	103, 321, 337, 540
AluBI	AGCT	3 cut(s)	226, 241, 319
AluI	AGCT	3 cut(s)	226, 241, 319
AlwI	GGATC	2 cut(s)	283, 531
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	6 cut(s)	168, 186, 201, 219, 252, 312
ApeKI	GCWGC	1 cut(s)	132
AscI	GGCGCGCC	1 cut(s)	209
AspLEI	GCGC	9 cut(s)	62, 78, 120, 146, 159, 211, 213, 330, 393
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	2 cut(s)	293, 332
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	52, 513
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	3 cut(s)	10, 244, 346
BceAI	ACGGC	1 cut(s)	411
BcnI	CCSGG	2 cut(s)	293, 332
BfaI	CTAG	1 cut(s)	45
BfoI	RGCGCY	2 cut(s)	63, 331
BglI	GCCNNNNNGGC	1 cut(s)	47
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	293, 332
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	297, 510
BmrFI	CCNGG	2 cut(s)	293, 332
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
BpmI	CTGGAG	2 cut(s)	248, 263
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	2 cut(s)	293, 332
BsaJI	CCNNGG	3 cut(s)	126, 183, 204
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 347, 377, 395, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 321, 337, 540
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	126, 183, 204
BseLI	CCNNNNNNNGG	4 cut(s)	103, 321, 337, 540
BseMII	CTCAG	2 cut(s)	311, 506
BseNI	ACTGG	1 cut(s)	119
BsePI	GCGCGC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	144
Bsh1236I	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
BshFI	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	3 cut(s)	293, 331, 518
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	4 cut(s)	103, 321, 337, 540
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	52, 513
Bsp143I	GATC	2 cut(s)	288, 523
Bsp68I	TCGCGA	1 cut(s)	287
BspANI	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
BspCNI	CTCAG	2 cut(s)	312, 505
BspFNI	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
BspLI	GGNNCC	2 cut(s)	297, 510
BspPI	GGATC	2 cut(s)	283, 531
BsrBI	CCGCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	126, 183, 204
BssHII	GCGCGC	1 cut(s)	209
BssMI	GATC	2 cut(s)	288, 523
Bst4CI	ACNGT	1 cut(s)	446
BstC8I	GCNNGC	4 cut(s)	94, 180, 196, 211
BstDEI	CTNAG	2 cut(s)	320, 492
BstFNI	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
BstH2I	RGCGCY	2 cut(s)	63, 331
BstHHI	GCGC	9 cut(s)	62, 78, 120, 146, 159, 211, 213, 330, 393
BstKTI	GATC	2 cut(s)	291, 526
BstMBI	GATC	2 cut(s)	288, 523
BstSCI	CCNGG	2 cut(s)	291, 330
BstUI	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
BstV1I	GCAGC	1 cut(s)	144
BsuRI	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
BtgZI	GCGATG	1 cut(s)	365
BtuMI	TCGCGA	1 cut(s)	287
Cac8I	GCNNGC	4 cut(s)	94, 180, 196, 211
CfoI	GCGC	9 cut(s)	62, 78, 120, 146, 159, 211, 213, 330, 393
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	2 cut(s)	271, 397
Csp6I	GTAC	2 cut(s)	112, 412
CviQI	GTAC	2 cut(s)	112, 412
DdeI	CTNAG	2 cut(s)	320, 492
DpnI	GATC	2 cut(s)	290, 525
DpnII	GATC	2 cut(s)	288, 523
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	219, 252
EciI	GGCGGA	4 cut(s)	50, 70, 416, 521
Eco24I	GRGCYC	2 cut(s)	52, 513
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	533
EcoT38I	GRGCYC	2 cut(s)	52, 513
FalI	AAGNNNNNCTT	1 cut(s)	539
FaqI	GGGAC	1 cut(s)	281
FriOI	GRGCYC	2 cut(s)	52, 513
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	9 cut(s)	61, 77, 119, 145, 158, 210, 212, 329, 392
GsuI	CTGGAG	2 cut(s)	248, 263
HaeII	RGCGCY	2 cut(s)	63, 331
HaeIII	GGCC	6 cut(s)	170, 188, 203, 221, 254, 314
HapII	CCGG	3 cut(s)	293, 331, 518
HgaI	GACGC	2 cut(s)	271, 397
HhaI	GCGC	9 cut(s)	62, 78, 120, 146, 159, 211, 213, 330, 393
Hin6I	GCGC	9 cut(s)	60, 76, 118, 144, 157, 209, 211, 328, 391
HinP1I	GCGC	9 cut(s)	60, 76, 118, 144, 157, 209, 211, 328, 391
HinfI	GANTC	2 cut(s)	371, 452
HpaII	CCGG	3 cut(s)	293, 331, 518
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	367, 495
Hpy188III	TCNNGA	2 cut(s)	286, 298
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	229, 265, 295
HpyCH4III	ACNGT	1 cut(s)	446
HpyF3I	CTNAG	2 cut(s)	320, 492
HspAI	GCGC	9 cut(s)	60, 76, 118, 144, 157, 209, 211, 328, 391
Kzo9I	GATC	2 cut(s)	288, 523
LmnI	GCTCC	4 cut(s)	57, 106, 238, 508
LpnPI	CCDG	7 cut(s)	100, 212, 227, 276, 306, 344, 531
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	290, 525
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	2 cut(s)	288, 523
MboII	GAAGA	6 cut(s)	22, 25, 259, 370, 388, 391
MhlI	GDGCHC	2 cut(s)	52, 513
MlsI	TGGCCA	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	3 cut(s)	293, 331, 518
MspR9I	CCNGG	2 cut(s)	293, 332
MvnI	CGCG	7 cut(s)	120, 144, 159, 211, 282, 287, 391
NciI	CCSGG	2 cut(s)	293, 332
NdeII	GATC	2 cut(s)	288, 523
NlaIV	GGNNCC	2 cut(s)	297, 510
NmeAIII	GCCGAG	7 cut(s)	31, 97, 151, 208, 229, 247, 340
NmuCI	GTSAC	1 cut(s)	304
NruI	TCGCGA	1 cut(s)	287
PalAI	GGCGCGCC	1 cut(s)	209
PauI	GCGCGC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	297, 510
PspPI	GGNCC	1 cut(s)	295
PteI	GCGCGC	1 cut(s)	209
RruI	TCGCGA	1 cut(s)	287
RsaI	GTAC	2 cut(s)	113, 413
RsaNI	GTAC	2 cut(s)	112, 412
SaqAI	TTAA	1 cut(s)	558
Sau3AI	GATC	2 cut(s)	288, 523
Sau96I	GGNCC	1 cut(s)	295
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	293, 332
SduI	GDGCHC	2 cut(s)	52, 513
SetI	ASST	7 cut(s)	228, 243, 276, 306, 321, 473, 564
SgsI	GGCGCGCC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	291, 330
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	3 cut(s)	374, 434, 455
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	9 cut(s)	7, 44, 149, 191, 194, 282, 347, 350, 401
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	132
Tsp45I	GTSAC	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	295
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.