Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008369

Physical Location & Seq

Genomic Coordinates Forward (+)

14792105 .. 14793871

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCGAAAAAGATGGGTGTGAACAGCAAGGCGGAGGCCGCCAAGGCTCGGAAGAGCTCCACCGAAGCCGAGCGCAAGGAGCGCGAGACTCGCGAGAAGGACGAGCAGTACTGGCGCGAGGCGGAGGGCAGCAAGTCCCGCGCGGCCAAGAAGCGCGAGGAAGAAGCCGAGAAGCGGGCGGAGGCCGCCGCGCGGAAAGCCGAGGCCCGCCGATTGGCGGAGCTGGAGGAGAAGGAGCTCGAAAAGGCGGCAAAGAAGCCCGATAAGAAGGTCGGCCGAGTCACGATCCCGGTTCCTAAGGTGACTGAGGCCGAGCTGAGACGGCGGAAAGAGGAGGAGCAGGCGGCGTTGGAGAAGAAATCGGATGAGGTGAAGAAGAAGCAGAGCCGTACGGCCGAGGAGGAGGAGTATGAGAGGATGGTGGTGGTAGAGAATAAGAATCGGGATGATTCGTTTATTGAGGCTAGGTCGGTGGAGGAGGCGGTTGCGAAGATGTCCGTGTCGGAGAGCTTGCCGGTGGATCGGCACCCGGAGAGGAGGCTCAAGGCTTCGTTTAAGGCTTTTGAAGAAGCTGAGCTCCCGAGGCTGAAGGAAGAGAAACCAGGTCTTACTCACAACCAATACAAGGATATGATATGGAAGCTTTGGAAGAAATCTCCGGATAATCCTCTAAATCAGGTTGAGTTTCGTCTCAGATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ccdc124

Protein Analysis

235

Amino Acids

27.39

Weight (kDa)

9.34

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16210
fragaria_vesca	FvH4_2g15950 FvH4_2g15950 FvH4_2g15950
malus_domestica	MD05G1128500.v1.1 MD10G1131800.v1.1
prunus_persica	Prupe.8G172600_v2.0.a1
pyrus_communis	pycom05g12440 pycom10g11290
rosa_chinensis	RchiOBHm_Chr6g0279491
rosa_laevigata	RLG00000013143
rosa_multiflora	Rmu_co8117152.1_g000001 Rmu_sc0004649.1_g000023
rosa_roxburghii	Rroxscaffold_7G00188880
rosa_rugosa	Rorug06G0124400 Rorug06G0124500 Rorug06G0124600 Rorug06G0124700
rosa_samantha	Rh6AG233900 Rh6BG238100 Rh6CG240200 Rh6DG231800
rosa_wichuraiana	Rw6G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	525
AccII	CGCG	8 cut(s)	84, 93, 117, 141, 143, 156, 191, 193
AccIII	TCCGGA	1 cut(s)	658
AclWI	GGATC	2 cut(s)	280, 528
AcoI	YGGCCR	3 cut(s)	144, 274, 393
AcuI	CTGAAG	1 cut(s)	608
AfaI	GTAC	2 cut(s)	110, 391
AfiI	CCNNNNNNNGG	6 cut(s)	48, 174, 192, 214, 217, 625
AgsI	TTSAA	1 cut(s)	566
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	8 cut(s)	57, 223, 238, 316, 510, 572, 577, 643
AluI	AGCT	8 cut(s)	57, 223, 238, 316, 510, 572, 577, 643
Alw21I	GWGCWC	3 cut(s)	59, 240, 579
Alw26I	GTCTC	3 cut(s)	80, 313, 695
AlwI	GGATC	2 cut(s)	280, 528
Ama87I	CYCGRG	1 cut(s)	580
Aor13HI	TCCGGA	1 cut(s)	658
AoxI	GGCC	7 cut(s)	36, 144, 183, 204, 274, 309, 393
ApeKI	GCWGC	1 cut(s)	129
AspLEI	GCGC	6 cut(s)	75, 84, 117, 143, 156, 193
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	2 cut(s)	290, 530
AsuHPI	GGTGA	2 cut(s)	313, 382
AvaI	CYCGRG	1 cut(s)	580
AxyI	CCTNAGG	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	525
BanII	GRGCYC	3 cut(s)	59, 240, 579
Bbv12I	GWGCWC	3 cut(s)	59, 240, 579
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	2 cut(s)	7, 412
BceAI	ACGGC	3 cut(s)	338, 372, 408
BciT130I	CCWGG	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	290, 530
BcoDI	GTCTC	3 cut(s)	80, 313, 695
BfaI	CTAG	1 cut(s)	465
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	7 cut(s)	39, 130, 144, 186, 189, 249, 345
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	7 cut(s)	40, 131, 145, 187, 190, 250, 346
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	3 cut(s)	290, 530, 603
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	294, 527
BmrFI	CCNGG	3 cut(s)	290, 530, 603
BpmI	CTGGAG	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	2 cut(s)	290, 530
BsaJI	CCNNGG	4 cut(s)	42, 201, 396, 581
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	6 cut(s)	48, 174, 192, 214, 217, 625
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	4 cut(s)	42, 201, 396, 581
BseGI	GGATG	3 cut(s)	370, 423, 451
BseLI	CCNNNNNNNGG	6 cut(s)	48, 174, 192, 214, 217, 625
BseMII	CTCAG	3 cut(s)	297, 308, 564
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	8 cut(s)	242, 347, 350, 413, 416, 419, 491, 550
BseX3I	CGGCCG	2 cut(s)	274, 393
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	8 cut(s)	84, 93, 117, 141, 143, 156, 191, 193
Bsh1285I	CGRYCG	2 cut(s)	277, 396
BshFI	GGCC	7 cut(s)	38, 146, 185, 206, 276, 311, 395
BshNI	GGYRCC	1 cut(s)	525
BsiEI	CGRYCG	2 cut(s)	277, 396
BsiHKAI	GWGCWC	3 cut(s)	59, 240, 579
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	4 cut(s)	290, 515, 530, 659
BsiWI	CGTACG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	6 cut(s)	48, 174, 192, 214, 217, 625
BsmAI	GTCTC	3 cut(s)	80, 313, 695
BsmBI	CGTCTC	2 cut(s)	313, 695
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	7 cut(s)	38, 146, 185, 206, 276, 311, 395
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	3 cut(s)	59, 240, 579
Bsp13I	TCCGGA	1 cut(s)	658
Bsp143I	GATC	2 cut(s)	285, 520
Bsp1720I	GCTNAGC	1 cut(s)	573
Bsp68I	TCGCGA	1 cut(s)	93
BspANI	GGCC	7 cut(s)	38, 146, 185, 206, 276, 311, 395
BspCNI	CTCAG	4 cut(s)	298, 309, 565, 705
BspEI	TCCGGA	1 cut(s)	658
BspFNI	CGCG	8 cut(s)	84, 93, 117, 141, 143, 156, 191, 193
BspLI	GGNNCC	2 cut(s)	294, 527
BspPI	GGATC	2 cut(s)	280, 528
BspQI	GCTCTTC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	4 cut(s)	42, 201, 396, 581
BssMI	GATC	2 cut(s)	285, 520
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	603
Bst6I	CTCTTC	2 cut(s)	47, 588
BstC8I	GCNNGC	4 cut(s)	177, 208, 342, 512
BstDEI	CTNAG	5 cut(s)	297, 306, 317, 573, 692
BstF5I	GGATG	3 cut(s)	370, 423, 451
BstFNI	CGCG	8 cut(s)	84, 93, 117, 141, 143, 156, 191, 193
BstHHI	GCGC	6 cut(s)	75, 84, 117, 143, 156, 193
BstKTI	GATC	2 cut(s)	288, 523
BstMAI	GTCTC	3 cut(s)	80, 313, 695
BstMBI	GATC	2 cut(s)	285, 520
BstMCI	CGRYCG	2 cut(s)	277, 396
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	3 cut(s)	288, 528, 601
BstUI	CGCG	8 cut(s)	84, 93, 117, 141, 143, 156, 191, 193
BstV1I	GCAGC	1 cut(s)	141
BstZI	CGGCCG	2 cut(s)	274, 393
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	7 cut(s)	38, 146, 185, 206, 276, 311, 395
BtsCI	GGATG	3 cut(s)	370, 423, 451
BtuMI	TCGCGA	1 cut(s)	93
Cac8I	GCNNGC	4 cut(s)	177, 208, 342, 512
CfoI	GCGC	6 cut(s)	75, 84, 117, 143, 156, 193
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	205
CsiI	ACCWGGT	1 cut(s)	601
Csp6I	GTAC	2 cut(s)	109, 390
CviQI	GTAC	2 cut(s)	109, 390
DdeI	CTNAG	5 cut(s)	297, 306, 317, 573, 692
DpnI	GATC	2 cut(s)	287, 522
DpnII	GATC	2 cut(s)	285, 520
EaeI	YGGCCR	3 cut(s)	144, 274, 393
EagI	CGGCCG	2 cut(s)	274, 393
Eam1104I	CTCTTC	2 cut(s)	47, 588
EarI	CTCTTC	2 cut(s)	47, 588
EciI	GGCGGA	5 cut(s)	47, 137, 194, 233, 340
Ecl136II	GAGCTC	3 cut(s)	57, 238, 577
EclXI	CGGCCG	2 cut(s)	274, 393
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	3 cut(s)	59, 240, 579
Eco52I	CGGCCG	2 cut(s)	274, 393
Eco53kI	GAGCTC	3 cut(s)	57, 238, 577
Eco57I	CTGAAG	1 cut(s)	608
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	580
EcoICRI	GAGCTC	3 cut(s)	57, 238, 577
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	3 cut(s)	59, 240, 579
ErhI	CCWWGG	1 cut(s)	42
Esp3I	CGTCTC	2 cut(s)	313, 695
FaiI	YATR	6 cut(s)	411, 632, 637, 699, 701, 703
FaqI	GGGAC	1 cut(s)	121
FauI	CCCGC	3 cut(s)	146, 168, 215
Fnu4HI	GCNGC	7 cut(s)	39, 130, 144, 186, 189, 249, 345
FokI	GGATG	3 cut(s)	377, 430, 458
FriOI	GRGCYC	3 cut(s)	59, 240, 579
Fsp4HI	GCNGC	7 cut(s)	39, 130, 144, 186, 189, 249, 345
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	6 cut(s)	74, 83, 116, 142, 155, 192
GluI	GCNGC	7 cut(s)	39, 130, 144, 186, 189, 249, 345
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	7 cut(s)	38, 146, 185, 206, 276, 311, 395
HapII	CCGG	4 cut(s)	290, 515, 530, 659
HhaI	GCGC	6 cut(s)	75, 84, 117, 143, 156, 193
Hin6I	GCGC	6 cut(s)	73, 82, 115, 141, 154, 191
HinP1I	GCGC	6 cut(s)	73, 82, 115, 141, 154, 191
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	4 cut(s)	88, 279, 439, 449
HpaII	CCGG	4 cut(s)	290, 515, 530, 659
HphI	GGTGA	2 cut(s)	313, 382
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	51, 364, 505, 695
Hpy188III	TCNNGA	5 cut(s)	92, 283, 443, 580, 659
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	91, 226, 262, 583
HpyF3I	CTNAG	5 cut(s)	297, 306, 317, 573, 692
HspAI	GCGC	6 cut(s)	73, 82, 115, 141, 154, 191
Kpn2I	TCCGGA	1 cut(s)	658
Kzo9I	GATC	2 cut(s)	285, 520
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	6 cut(s)	62, 79, 220, 235, 337, 582
Lsp1109I	GCAGC	1 cut(s)	141
MabI	ACCWGGT	1 cut(s)	601
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	280, 301
MalI	GATC	2 cut(s)	287, 522
MboI	GATC	2 cut(s)	285, 520
MboII	GAAGA	9 cut(s)	64, 173, 367, 385, 388, 502, 578, 605, 661
MhlI	GDGCHC	3 cut(s)	59, 240, 579
MlyI	GAGTC	2 cut(s)	82, 288
MmeI	TCCRAC	2 cut(s)	330, 483
MroI	TCCGGA	1 cut(s)	658
MseI	TTAA	1 cut(s)	555
MspI	CCGG	4 cut(s)	290, 515, 530, 659
MspR9I	CCNGG	3 cut(s)	290, 530, 603
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	8 cut(s)	84, 93, 117, 141, 143, 156, 191, 193
NciI	CCSGG	2 cut(s)	290, 530
NdeII	GATC	2 cut(s)	285, 520
NlaIV	GGNNCC	2 cut(s)	294, 527
NmeAIII	GCCGAG	6 cut(s)	94, 193, 226, 302, 337, 421
NmuCI	GTSAC	2 cut(s)	280, 301
NruI	TCGCGA	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	439, 449
Pfl23II	CGTACG	1 cut(s)	389
PkrI	GCNGC	7 cut(s)	40, 131, 145, 187, 190, 250, 346
PleI	GAGTC	2 cut(s)	82, 287
PpsI	GAGTC	2 cut(s)	82, 287
Psp124BI	GAGCTC	3 cut(s)	59, 240, 579
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspLI	CGTACG	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	294, 527
PspPI	GGNCC	1 cut(s)	205
RruI	TCGCGA	1 cut(s)	93
RsaI	GTAC	2 cut(s)	110, 391
RsaNI	GTAC	2 cut(s)	109, 390
SacI	GAGCTC	3 cut(s)	59, 240, 579
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	7 cut(s)	39, 130, 144, 186, 189, 249, 345
Sau3AI	GATC	2 cut(s)	285, 520
Sau96I	GGNCC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	2 cut(s)	82, 288
ScrFI	CCNGG	3 cut(s)	290, 530, 603
SduI	GDGCHC	3 cut(s)	59, 240, 579
SexAI	ACCWGGT	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	3 cut(s)	59, 240, 579
StyD4I	CCNGG	3 cut(s)	288, 528, 601
StyI	CCWWGG	1 cut(s)	42
TaqI	TCGA	1 cut(s)	240
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	6 cut(s)	41, 146, 188, 191, 251, 347
TfiI	GAWTC	2 cut(s)	439, 449
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseFI	GTSAC	2 cut(s)	280, 301
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	2 cut(s)	280, 301
TspGWI	ACGGA	1 cut(s)	487
XspI	CTAG	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.