RLG00000013143

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008369
Physical Location & Seq
Reverse (-)
26713624 .. 26715485
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013143

Sequence Viewer

Length: 696 bp
ATGCCGCCGAAGAAGATGGGTGTGAACAGCAAGGCGGAAGCCGCTAGGGCTCGGCGGAGCGCCACAGAAGCCGATCGCAAGGAGAGCGAGGCTCGCCACAAGGAGGAGCAGTACTGGCGCGAAGCCGAGGGCAGCAAATCACGCGCCGCCAAGAAGCGCGAGGAGGAAGCCGAGAAGCGAGCCGAGGCCGCCGCTCGCAAGGCCGAGGCGCGCCGATTGGCCGAGCTGGAGGAGAAGGAGCTGGAGAAGATGGCTAAGAAGCCTGACAAGAAGGTCAGCCGCGTCGCGATCCCGGTGCCGAAGGTGACGGAGGCCGAGCTGAGGAAGCGGCGGGAGGAGGAGGCGGCGGCGATGGAGAAGAAGTCGGAGGAGTCGAAGAAGAAGCAGACGCGCACGGCGGCGGAGGAGGAGTACGAGAGAATGGTGCTTGTGTCGAACACGAACCGTGATGATTCGACTATTGAGGCGAGGTCGGTGGAGGAAGCGATTGCTCAGATGTCGGTGGCGGAGCCCCTGCCGGTGGATCGCCACCCCGAGAGGAGGCTCAAGGCTTCGTTTAAGGCATTTGAAGAGGCTGAGCTTCCCAGGTTGAAGGAGGAGAAACCAGGACTTACTCACAATCAATACAAGGACATGATATGGAAGCTATGGAAGAAATCTCCCGATAATCCTCTAAATCAGGTTGCTGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ccdc124

Protein Analysis

232

Amino Acids

26.62

Weight (kDa)

9.23

Isoelectric Point (pI)

67.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ccdc124 PF06244 147 - 227 4.5e-34 Coiled-coil domain-containing protein 124 /Oxs1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 194
AccII CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
AclWI GGATC 2 cut(s) 283, 531
AcoI YGGCCR 1 cut(s) 219
AfaI GTAC 2 cut(s) 113, 413
AfiI CCNNNNNNNGG 4 cut(s) 103, 321, 520, 540
AgsI TTSAA 2 cut(s) 569, 592
AjnI CCWGG 2 cut(s) 584, 604
AluBI AGCT 5 cut(s) 226, 241, 319, 580, 646
AluI AGCT 5 cut(s) 226, 241, 319, 580, 646
AlwI GGATC 2 cut(s) 283, 531
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 4 cut(s) 186, 201, 219, 312
ApeKI GCWGC 2 cut(s) 132, 686
AscI GGCGCGCC 1 cut(s) 209
AspLEI GCGC 7 cut(s) 62, 120, 146, 159, 211, 213, 393
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 533
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 52, 513
BbvCI CCTCAGC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 144, 673
BccI CCATC 3 cut(s) 10, 244, 346
BceAI ACGGC 1 cut(s) 411
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 2 cut(s) 586, 606
BcnI CCSGG 1 cut(s) 293
BfaI CTAG 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 63
BglI GCCNNNNNGGC 1 cut(s) 47
BlpI GCTNAGC 1 cut(s) 576
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 3 cut(s) 293, 586, 606
BmeT110I CYCGRG 1 cut(s) 533
BmiI GGNNCC 2 cut(s) 297, 510
BmrFI CCNGG 3 cut(s) 293, 586, 606
BplI GAGNNNNNCTC 2 cut(s) 76, 108
BpmI CTGGAG 2 cut(s) 248, 263
Bpu10I CCTNAGC 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 4 cut(s) 126, 183, 204, 584
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 347, 377, 395, 425
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 321, 520, 540
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 119
BseBI CCWGG 2 cut(s) 586, 606
BseDI CCNNGG 4 cut(s) 126, 183, 204, 584
BseLI CCNNNNNNNGG 4 cut(s) 103, 321, 520, 540
BseMII CTCAG 4 cut(s) 311, 506, 567, 681
BseNI ACTGG 1 cut(s) 119
BsePI GCGCGC 1 cut(s) 209
BseXI GCAGC 2 cut(s) 144, 673
Bsh1236I CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 4 cut(s) 188, 203, 221, 314
BshNI GGYRCC 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 2 cut(s) 293, 518
BslI CCNNNNNNNGG 4 cut(s) 103, 321, 520, 540
BsnI GGCC 4 cut(s) 188, 203, 221, 314
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 52, 513
Bsp143I GATC 3 cut(s) 73, 288, 523
Bsp1720I GCTNAGC 1 cut(s) 576
Bsp68I TCGCGA 1 cut(s) 287
BspANI GGCC 4 cut(s) 188, 203, 221, 314
BspCNI CTCAG 4 cut(s) 312, 505, 568, 682
BspFNI CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
BspLI GGNNCC 2 cut(s) 297, 510
BspPI GGATC 2 cut(s) 283, 531
BspT107I GGYRCC 1 cut(s) 295
BsrBI CCGCTC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 126, 183, 204, 584
BssHII GCGCGC 1 cut(s) 209
BssMI GATC 3 cut(s) 73, 288, 523
Bst2UI CCWGG 2 cut(s) 586, 606
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 564
BstC8I GCNNGC 4 cut(s) 94, 180, 196, 211
BstDEI CTNAG 5 cut(s) 255, 320, 492, 576, 690
BstFNI CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 7 cut(s) 62, 120, 146, 159, 211, 213, 393
BstKTI GATC 3 cut(s) 76, 291, 526
BstMBI GATC 3 cut(s) 73, 288, 523
BstMCI CGRYCG 1 cut(s) 76
BstNI CCWGG 2 cut(s) 586, 606
BstSCI CCNGG 3 cut(s) 291, 584, 604
BstUI CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
BstV1I GCAGC 2 cut(s) 144, 673
BsuRI GGCC 4 cut(s) 188, 203, 221, 314
BtgZI GCGATG 1 cut(s) 365
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 4 cut(s) 94, 180, 196, 211
CfoI GCGC 7 cut(s) 62, 120, 146, 159, 211, 213, 393
Cfr10I RCCGGY 1 cut(s) 517
CseI GACGC 2 cut(s) 271, 397
Csp6I GTAC 2 cut(s) 112, 412
CviAII CATG 1 cut(s) 634
CviQI GTAC 2 cut(s) 112, 412
DdeI CTNAG 5 cut(s) 255, 320, 492, 576, 690
DpnI GATC 3 cut(s) 75, 290, 525
DpnII GATC 3 cut(s) 73, 288, 523
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
EciI GGCGGA 4 cut(s) 50, 70, 416, 521
Eco24I GRGCYC 2 cut(s) 52, 513
Eco88I CYCGRG 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 584, 604
EcoT38I GRGCYC 2 cut(s) 52, 513
FaeI CATG 1 cut(s) 637
FaiI YATR 3 cut(s) 635, 640, 649
FatI CATG 1 cut(s) 633
FauI CCCGC 1 cut(s) 324
FriOI GRGCYC 2 cut(s) 52, 513
FspBI CTAG 1 cut(s) 45
GlaI GCGC 7 cut(s) 61, 119, 145, 158, 210, 212, 392
GsuI CTGGAG 2 cut(s) 248, 263
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 4 cut(s) 188, 203, 221, 314
HapII CCGG 2 cut(s) 293, 518
HgaI GACGC 2 cut(s) 271, 397
HhaI GCGC 7 cut(s) 62, 120, 146, 159, 211, 213, 393
Hin1II CATG 1 cut(s) 637
Hin6I GCGC 7 cut(s) 60, 118, 144, 157, 209, 211, 391
HinP1I GCGC 7 cut(s) 60, 118, 144, 157, 209, 211, 391
HinfI GANTC 2 cut(s) 371, 452
HpaII CCGG 2 cut(s) 293, 518
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 367, 495
Hpy188III TCNNGA 2 cut(s) 286, 662
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 4 cut(s) 229, 265, 295, 586
HpyCH4III ACNGT 1 cut(s) 446
HpyF3I CTNAG 5 cut(s) 255, 320, 492, 576, 690
Hsp92II CATG 1 cut(s) 637
HspAI GCGC 7 cut(s) 60, 118, 144, 157, 209, 211, 391
Kzo9I GATC 3 cut(s) 73, 288, 523
LmnI GCTCC 4 cut(s) 57, 106, 238, 508
Lsp1109I GCAGC 2 cut(s) 144, 673
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 75, 290, 525
MbiI CCGCTC 1 cut(s) 194
MboI GATC 3 cut(s) 73, 288, 523
MboII GAAGA 8 cut(s) 22, 25, 259, 370, 388, 391, 581, 664
MhlI GDGCHC 2 cut(s) 52, 513
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 345
MseI TTAA 1 cut(s) 558
MspI CCGG 2 cut(s) 293, 518
MspR9I CCNGG 3 cut(s) 293, 586, 606
MvaI CCWGG 2 cut(s) 586, 606
MvnI CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
NciI CCSGG 1 cut(s) 293
NdeII GATC 3 cut(s) 73, 288, 523
NlaIII CATG 1 cut(s) 637
NlaIV GGNNCC 2 cut(s) 297, 510
NmeAIII GCCGAG 7 cut(s) 31, 151, 196, 208, 229, 247, 340
NmuCI GTSAC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 287
PalAI GGCGCGCC 1 cut(s) 209
PauI GCGCGC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PfeI GAWTC 1 cut(s) 452
Ple19I CGATCG 1 cut(s) 76
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 584, 604
PspGI CCWGG 2 cut(s) 584, 604
PspN4I GGNNCC 2 cut(s) 297, 510
PteI GCGCGC 1 cut(s) 209
PvuI CGATCG 1 cut(s) 76
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 2 cut(s) 113, 413
RsaNI GTAC 2 cut(s) 112, 412
SaqAI TTAA 1 cut(s) 558
Sau3AI GATC 3 cut(s) 73, 288, 523
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 3 cut(s) 293, 586, 606
SduI GDGCHC 2 cut(s) 52, 513
SgsI GGCGCGCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 3 cut(s) 291, 584, 604
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 3 cut(s) 374, 434, 455
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 132, 686
Tsp45I GTSAC 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 323
XspI CTAG 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.