Rorug06G0124600

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008369
Physical Location & Seq
Forward (+)
17243750 .. 17244711
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0124600.1

Sequence Viewer

Length: 471 bp
ATGCTACGATCAGATTTCTTGGCAATCGAAGAAGTAGGAGGTGAGAGTTGGTTTGTTCATTACAGAGTTGATGTAGTGTTTGCTGGCCATGTCCATGCATATGAAAGATCATATAGAATCTCAAATATACACTACAACGTAACAAGTGGTTACCAGTACCCCATACCAGACAAGTCGGCTCCTGTCTACATAACTGTTGGAGATGGAGGGAACCAAGAAGGTCTTGCTGGAAGGTTTAGAGATCCACAACCAGAATATTCTGCATTCCGAGAAGCGAGCTATGGGCATTCGACACTGGAGATTCATAACCGGACGCATGCACTTTACCACTGGAACCGCAATGATGACGGGAAGAAAATGGCAACTGACGCATTTGTATTGCATAACCAGTACTGGGGTACAAATCACAGAAGGCGAAAACTGAAGAAGCATTATGCTAGGAAATATATTGATCCAGTTGCAGCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ccdc124

Protein Analysis

156

Amino Acids

18.19

Weight (kDa)

9.02

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos_C PF14008 60 - 118 4e-22 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AciI CCGC 1 cut(s) 337
AclWI GGATC 2 cut(s) 236, 446
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 3 cut(s) 158, 392, 400
AfiI CCNNNNNNNGG 1 cut(s) 394
AluBI AGCT 2 cut(s) 279, 464
AluI AGCT 2 cut(s) 279, 464
AlwI GGATC 2 cut(s) 236, 446
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 53
BalI TGGCCA 1 cut(s) 87
BccI CCATC 1 cut(s) 197
BfaI CTAG 1 cut(s) 438
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
BmcAI AGTACT 1 cut(s) 392
BmiI GGNNCC 3 cut(s) 180, 212, 335
BmrI ACTGGG 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 6 cut(s) 154, 300, 335, 388, 398, 455
Bse3DI GCAATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 346
BseNI ACTGG 6 cut(s) 154, 300, 335, 388, 398, 455
BshFI GGCC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 394
BsmI GAATGC 2 cut(s) 263, 286
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 4 cut(s) 8, 107, 241, 451
BspACI CCGC 1 cut(s) 337
BspANI GGCC 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 180, 212, 335
BspPI GGATC 2 cut(s) 236, 446
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 6 cut(s) 154, 300, 335, 388, 398, 455
BssMI GATC 4 cut(s) 8, 107, 241, 451
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 85, 277, 318
BstEII GGTNACC 1 cut(s) 149
BstKTI GATC 4 cut(s) 11, 110, 244, 454
BstMBI GATC 4 cut(s) 8, 107, 241, 451
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 320
BstPI GGTNACC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 293, 328
Cac8I GCNNGC 3 cut(s) 85, 277, 318
CseI GACGC 2 cut(s) 322, 377
Csp6I GTAC 3 cut(s) 157, 391, 399
CviAII CATG 3 cut(s) 89, 95, 317
CviJI RGCY 4 cut(s) 87, 179, 279, 464
CviKI_1 RGCY 4 cut(s) 87, 179, 279, 464
CviQI GTAC 3 cut(s) 157, 391, 399
DpnI GATC 4 cut(s) 10, 109, 243, 453
DpnII GATC 4 cut(s) 8, 107, 241, 451
EaeI YGGCCR 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 100
FaeI CATG 3 cut(s) 92, 98, 320
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 3 cut(s) 88, 94, 316
FauNDI CATATG 1 cut(s) 100
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 438
GluI GCNGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 87
HapII CCGG 1 cut(s) 310
HgaI GACGC 2 cut(s) 322, 377
Hin1II CATG 3 cut(s) 92, 98, 320
HinfI GANTC 2 cut(s) 117, 301
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 13, 269
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 212, 225, 405
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 5 cut(s) 98, 263, 320, 382, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 3 cut(s) 92, 98, 320
Kzo9I GATC 4 cut(s) 8, 107, 241, 451
LmnI GCTCC 1 cut(s) 184
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 139, 149
MalI GATC 4 cut(s) 10, 109, 243, 453
MboI GATC 4 cut(s) 8, 107, 241, 451
MboII GAAGA 3 cut(s) 41, 364, 436
MflI RGATCY 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 87
MluNI TGGCCA 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 2 cut(s) 32, 200
Mox20I TGGCCA 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 100
MscI TGGCCA 1 cut(s) 87
MslI CAYNNNNRTG 2 cut(s) 93, 99
Msp20I TGGCCA 1 cut(s) 87
MspI CCGG 1 cut(s) 310
Mva1269I GAATGC 2 cut(s) 263, 286
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeI CATATG 1 cut(s) 100
NdeII GATC 4 cut(s) 8, 107, 241, 451
NlaIII CATG 3 cut(s) 92, 98, 320
NlaIV GGNNCC 3 cut(s) 180, 212, 335
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PctI GAATGC 2 cut(s) 263, 286
PfeI GAWTC 2 cut(s) 117, 301
PkrI GCNGC 1 cut(s) 463
PspEI GGTNACC 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 180, 212, 335
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 3 cut(s) 158, 392, 400
RsaNI GTAC 3 cut(s) 157, 391, 399
RseI CAYNNNNRTG 2 cut(s) 93, 99
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 4 cut(s) 8, 107, 241, 451
ScaI AGTACT 1 cut(s) 392
SetI ASST 6 cut(s) 43, 141, 223, 236, 281, 466
SmiMI CAYNNNNRTG 2 cut(s) 93, 99
SphI GCATGC 1 cut(s) 320
SsiI CCGC 1 cut(s) 337
SspI AATATT 1 cut(s) 257
SspMI CTAG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 27, 290
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 2 cut(s) 117, 301
TscAI CASTG 2 cut(s) 300, 335
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 3 cut(s) 47, 117, 293
TspRI CASTG 2 cut(s) 300, 335
XceI RCATGY 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 392
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.