FvH4_2g15950

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008369
Physical Location & Seq
Forward (+)
13957294 .. 13960423
3130 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15950.t2

Sequence Viewer

Length: 696 bp
ATGCCGCCGAAGAAGATGGGTGTGAACAGCAAGGCGGAGGCCGCTAGGGCACGGCGGAGCGCCACCGAATCCGAGCGGAAAGAAAGCGAGGCTCGCCAGAAAGAGGAGCAGTACTGGCGCGAAGCCGAGGGCAGCAAATCACGCGCCGCCAAGAAGAAGGAGGAGGAAGCCGAGAAGAAGGCCGAGGCCGCCGCTCGCAAGGCCGAGGCGCGCCGATTGGCCGAGCTGGAGGAGAAGGAGCTCGAGAAGATGGTGAAGAAGCCTGACAAGAAGGTCAGCCGCGTCGCGATCCCTGTGCCGAAGGTGACGGAGGCCGAGCTGAGGAAGCGCCGGGAGGAGGAGGCGGCGGCGATGGAGAAGAAGTCGGAGGAGTCGAAGAAGAAGCAGACGCGTACGGCGGCGGAGGAGGAGTACGAGAGAATGGTGCTGGTGTCGAACACGAATCGTGATGATTCGGTTATTGAGGCCAGGTCGGTGGAGGACGCGATTGCTCAGATGACGGTGGCGGAGTCCTTGCCGGTGGATCGCCACCCTGAGAAGAGACTCAAGGCTTCGTTTAAGGCATTTGAAGAAGCTGAGCTTCCCAGGTTGAAGGCGGAGAAACCAGGACTTACTCACAATCAATACAAGGACATGATATGGAAGCTGTGGAAGAAATCTCCTGATAATCCGCTAAATCAGGTTGCTACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ccdc124

Protein Analysis

232

Amino Acids

26.54

Weight (kDa)

9.28

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ccdc124 PF06244 147 - 227 6e-34 Coiled-coil domain-containing protein 124 /Oxs1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccBSI CCGCTC 2 cut(s) 76, 194
AccII CGCG 7 cut(s) 120, 144, 211, 282, 287, 391, 485
AclWI GGATC 2 cut(s) 283, 531
AcoI YGGCCR 1 cut(s) 219
AfaI GTAC 3 cut(s) 113, 394, 413
AfiI CCNNNNNNNGG 3 cut(s) 103, 321, 337
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 2 cut(s) 569, 592
AjnI CCWGG 3 cut(s) 467, 584, 604
AluBI AGCT 6 cut(s) 226, 241, 319, 575, 580, 646
AluI AGCT 6 cut(s) 226, 241, 319, 575, 580, 646
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 2 cut(s) 283, 531
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 7 cut(s) 39, 180, 186, 201, 219, 312, 465
ApeKI GCWGC 1 cut(s) 132
AscI GGCGCGCC 1 cut(s) 209
AspLEI GCGC 6 cut(s) 62, 120, 146, 211, 213, 330
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 265, 316
AvaI CYCGRG 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 144
BccI CCATC 3 cut(s) 10, 244, 346
BceAI ACGGC 2 cut(s) 68, 411
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 3 cut(s) 469, 586, 606
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 1 cut(s) 45
BfoI RGCGCY 2 cut(s) 63, 331
BglI GCCNNNNNGGC 1 cut(s) 47
BlpI GCTNAGC 1 cut(s) 576
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 4 cut(s) 332, 469, 586, 606
BmeT110I CYCGRG 1 cut(s) 242
BmrFI CCNGG 4 cut(s) 332, 469, 586, 606
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 126, 183, 204, 584
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 395, 425
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 321, 337
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 119
BseBI CCWGG 3 cut(s) 469, 586, 606
BseDI CCNNGG 4 cut(s) 126, 183, 204, 584
BseLI CCNNNNNNNGG 3 cut(s) 103, 321, 337
BseMII CTCAG 5 cut(s) 311, 506, 525, 567, 681
BseNI ACTGG 1 cut(s) 119
BsePI GCGCGC 1 cut(s) 209
BseRI GAGGAG 8 cut(s) 119, 176, 245, 350, 353, 383, 419, 422
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 1 cut(s) 144
Bsh1236I CGCG 7 cut(s) 120, 144, 211, 282, 287, 391, 485
BshFI GGCC 7 cut(s) 41, 182, 188, 203, 221, 314, 467
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 331, 518
BsiWI CGTACG 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 103, 321, 337
BsmAI GTCTC 1 cut(s) 535
BsnI GGCC 7 cut(s) 41, 182, 188, 203, 221, 314, 467
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 52, 243
Bsp143I GATC 2 cut(s) 288, 523
Bsp1720I GCTNAGC 1 cut(s) 576
Bsp68I TCGCGA 1 cut(s) 287
BspANI GGCC 7 cut(s) 41, 182, 188, 203, 221, 314, 467
BspCNI CTCAG 5 cut(s) 312, 505, 526, 568, 682
BspFNI CGCG 7 cut(s) 120, 144, 211, 282, 287, 391, 485
BspPI GGATC 2 cut(s) 283, 531
BsrBI CCGCTC 2 cut(s) 76, 194
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 126, 183, 204, 584
BssHII GCGCGC 1 cut(s) 209
BssMI GATC 2 cut(s) 288, 523
Bst2UI CCWGG 3 cut(s) 469, 586, 606
Bst4CI ACNGT 1 cut(s) 502
Bst6I CTCTTC 1 cut(s) 533
BstC8I GCNNGC 3 cut(s) 94, 196, 211
BstDEI CTNAG 5 cut(s) 320, 492, 534, 576, 690
BstFNI CGCG 7 cut(s) 120, 144, 211, 282, 287, 391, 485
BstH2I RGCGCY 2 cut(s) 63, 331
BstHHI GCGC 6 cut(s) 62, 120, 146, 211, 213, 330
BstKTI GATC 2 cut(s) 291, 526
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 2 cut(s) 288, 523
BstMWI GCNNNNNNNGC 8 cut(s) 41, 47, 93, 115, 141, 188, 200, 325
BstNI CCWGG 3 cut(s) 469, 586, 606
BstSCI CCNGG 4 cut(s) 330, 467, 584, 604
BstSLI GKGCMC 1 cut(s) 52
BstUI CGCG 7 cut(s) 120, 144, 211, 282, 287, 391, 485
BstV1I GCAGC 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 475
BsuRI GGCC 7 cut(s) 41, 182, 188, 203, 221, 314, 467
BtgZI GCGATG 1 cut(s) 365
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 3 cut(s) 94, 196, 211
CfoI GCGC 6 cut(s) 62, 120, 146, 211, 213, 330
Cfr10I RCCGGY 1 cut(s) 517
CseI GACGC 3 cut(s) 271, 397, 491
Csp6I GTAC 3 cut(s) 112, 393, 412
CviAII CATG 1 cut(s) 634
CviQI GTAC 3 cut(s) 112, 393, 412
DdeI CTNAG 5 cut(s) 320, 492, 534, 576, 690
DpnI GATC 2 cut(s) 290, 525
DpnII GATC 2 cut(s) 288, 523
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
EciI GGCGGA 5 cut(s) 50, 70, 416, 521, 611
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 3 cut(s) 467, 584, 604
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 1 cut(s) 637
FaiI YATR 2 cut(s) 635, 640
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FatI CATG 1 cut(s) 633
FriOI GRGCYC 1 cut(s) 243
FspBI CTAG 1 cut(s) 45
GlaI GCGC 6 cut(s) 61, 119, 145, 210, 212, 329
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 2 cut(s) 63, 331
HaeIII GGCC 7 cut(s) 41, 182, 188, 203, 221, 314, 467
HapII CCGG 2 cut(s) 331, 518
HgaI GACGC 3 cut(s) 271, 397, 491
HhaI GCGC 6 cut(s) 62, 120, 146, 211, 213, 330
Hin1II CATG 1 cut(s) 637
Hin6I GCGC 6 cut(s) 60, 118, 144, 209, 211, 328
HinP1I GCGC 6 cut(s) 60, 118, 144, 209, 211, 328
HinfI GANTC 6 cut(s) 68, 371, 442, 452, 509, 543
HpaII CCGG 2 cut(s) 331, 518
HphI GGTGA 2 cut(s) 265, 316
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 73, 367, 495
Hpy188III TCNNGA 4 cut(s) 244, 286, 446, 662
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 6 cut(s) 151, 172, 229, 265, 295, 586
HpyCH4III ACNGT 1 cut(s) 502
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 47, 93, 115, 141, 188, 200, 325
HpyF3I CTNAG 5 cut(s) 320, 492, 534, 576, 690
Hsp92II CATG 1 cut(s) 637
HspAI GCGC 6 cut(s) 60, 118, 144, 209, 211, 328
Kzo9I GATC 2 cut(s) 288, 523
LmnI GCTCC 3 cut(s) 57, 106, 238
Lsp1109I GCAGC 1 cut(s) 144
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 290, 525
MbiI CCGCTC 2 cut(s) 76, 194
MboI GATC 2 cut(s) 288, 523
MhlI GDGCHC 2 cut(s) 52, 243
MluI ACGCGT 1 cut(s) 389
MlyI GAGTC 3 cut(s) 380, 518, 537
MmeI TCCRAC 1 cut(s) 345
MseI TTAA 1 cut(s) 558
MspI CCGG 2 cut(s) 331, 518
MspR9I CCNGG 4 cut(s) 332, 469, 586, 606
MvaI CCWGG 3 cut(s) 469, 586, 606
MvnI CGCG 7 cut(s) 120, 144, 211, 282, 287, 391, 485
MwoI GCNNNNNNNGC 8 cut(s) 41, 47, 93, 115, 141, 188, 200, 325
NciI CCSGG 1 cut(s) 332
NdeII GATC 2 cut(s) 288, 523
NlaIII CATG 1 cut(s) 637
NmeAIII GCCGAG 6 cut(s) 151, 196, 208, 229, 247, 340
NmuCI GTSAC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 242
PalAI GGCGCGCC 1 cut(s) 209
PauI GCGCGC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PfeI GAWTC 3 cut(s) 68, 442, 452
Pfl23II CGTACG 1 cut(s) 392
PleI GAGTC 3 cut(s) 379, 517, 537
PpsI GAGTC 3 cut(s) 379, 517, 537
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 3 cut(s) 467, 584, 604
PspGI CCWGG 3 cut(s) 467, 584, 604
PspLI CGTACG 1 cut(s) 392
PteI GCGCGC 1 cut(s) 209
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 3 cut(s) 113, 394, 413
RsaNI GTAC 3 cut(s) 112, 393, 412
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 558
Sau3AI GATC 2 cut(s) 288, 523
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 3 cut(s) 380, 518, 537
ScrFI CCNGG 4 cut(s) 332, 469, 586, 606
SduI GDGCHC 2 cut(s) 52, 243
Sfr274I CTCGAG 1 cut(s) 242
SgsI GGCGCGCC 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 242, 545
SmoI CTYRAG 2 cut(s) 242, 545
SspMI CTAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 4 cut(s) 330, 467, 584, 604
TaaI ACNGT 1 cut(s) 502
TaqI TCGA 3 cut(s) 243, 374, 434
TatI WGTACW 1 cut(s) 111
TauI GCSGC 9 cut(s) 7, 44, 149, 191, 194, 282, 347, 350, 401
TfiI GAWTC 3 cut(s) 68, 442, 452
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.