Rh6BG238100

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008369
Physical Location & Seq
Forward (+)
44444412 .. 44446966
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG238100.1

Sequence Viewer

Length: 600 bp
ATGCCGCCGAAGAAGATGGGCGTGAACAGCAAGGCGGAAGCCGCTAGGGCTCGGCGGAGCGCCACCGAAGCCGAGCGCAAGGAGAGCGAGGCTCGCCACAAGGAGGAGCAGTACTGGCGCGAAGCCGAGGGCAGCAAATCACGCGCCGCCAAGAAGCGCGAGGAGGAGGCCGACAAGCGAGCCGAGGCCGCCGCTCGCAAGGCCGAGGCGCGCCGATTGGCCGAGCTGGAGGAGAAGGAGCTGGAGAAGATGGCCAAGAAGCCTGACAAGAAGGTCAGCCGCGTCGCGATCCCGGTGCCGAAGGTGACGGAGGCCGAGCTGAGGAAGCGCCGGGAGGAGGAGGCGGCGGCGATGGAGAAGAAGTCGGAGGAGTCGAAGAAGAAGCAGACGCGCACGGCGGCGGAGGAGGAGTACGAGAGAATGGTGCTTGTGTCGAACACGAACCGTGATGATTCGACTATTGAGGCGAGGTCGGTGGAGGAAGCGATTGCTCAGATGTCGGTGGCGGAGCCCTTGCCGGTGGATCGCCACCCCGAGAGGAGGCTCAAGGCTTCCTTTAAGGTGCCCTTTGCCATTGGTTTTAATCTAAATTGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ccdc124

Protein Analysis

199

Amino Acids

22.68

Weight (kDa)

9.38

Isoelectric Point (pI)

72.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ccdc124 PF06244 147 - 187 8.5e-10 Coiled-coil domain-containing protein 124 /Oxs1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccB1I GGYRCC 2 cut(s) 295, 562
AccBSI CCGCTC 1 cut(s) 194
AccII CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
AclWI GGATC 2 cut(s) 283, 531
AcoI YGGCCR 2 cut(s) 219, 252
AfaI GTAC 2 cut(s) 113, 413
AfiI CCNNNNNNNGG 4 cut(s) 103, 321, 337, 540
AluBI AGCT 3 cut(s) 226, 241, 319
AluI AGCT 3 cut(s) 226, 241, 319
AlwI GGATC 2 cut(s) 283, 531
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 6 cut(s) 168, 186, 201, 219, 252, 312
ApeKI GCWGC 1 cut(s) 132
AscI GGCGCGCC 1 cut(s) 209
AspLEI GCGC 9 cut(s) 62, 78, 120, 146, 159, 211, 213, 330, 393
AsuC2I CCSGG 2 cut(s) 293, 332
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 567
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 2 cut(s) 295, 562
BanII GRGCYC 2 cut(s) 52, 513
BbvCI CCTCAGC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 144
BccI CCATC 3 cut(s) 10, 244, 346
BceAI ACGGC 1 cut(s) 411
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BcnI CCSGG 2 cut(s) 293, 332
BfaI CTAG 2 cut(s) 45, 598
BfoI RGCGCY 2 cut(s) 63, 331
BglI GCCNNNNNGGC 1 cut(s) 47
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 293, 332
BmeT110I CYCGRG 1 cut(s) 533
BmiI GGNNCC 3 cut(s) 297, 510, 564
BmrFI CCNGG 2 cut(s) 293, 332
BplI GAGNNNNNCTC 2 cut(s) 76, 108
BpmI CTGGAG 2 cut(s) 248, 263
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 2 cut(s) 293, 332
BsaJI CCNNGG 3 cut(s) 126, 183, 204
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 347, 377, 395, 425
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 321, 337, 540
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 126, 183, 204
BseLI CCNNNNNNNGG 4 cut(s) 103, 321, 337, 540
BseMII CTCAG 2 cut(s) 311, 506
BseNI ACTGG 1 cut(s) 119
BsePI GCGCGC 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 1 cut(s) 144
Bsh1236I CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
BshFI GGCC 6 cut(s) 170, 188, 203, 221, 254, 314
BshNI GGYRCC 2 cut(s) 295, 562
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 3 cut(s) 293, 331, 518
BslI CCNNNNNNNGG 4 cut(s) 103, 321, 337, 540
BsnI GGCC 6 cut(s) 170, 188, 203, 221, 254, 314
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 3 cut(s) 52, 513, 567
Bsp143I GATC 2 cut(s) 288, 523
Bsp68I TCGCGA 1 cut(s) 287
BspANI GGCC 6 cut(s) 170, 188, 203, 221, 254, 314
BspCNI CTCAG 2 cut(s) 312, 505
BspFNI CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
BspLI GGNNCC 3 cut(s) 297, 510, 564
BspPI GGATC 2 cut(s) 283, 531
BspT107I GGYRCC 2 cut(s) 295, 562
BsrBI CCGCTC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 3 cut(s) 126, 183, 204
BssHII GCGCGC 1 cut(s) 209
BssMI GATC 2 cut(s) 288, 523
Bst4CI ACNGT 1 cut(s) 446
BstC8I GCNNGC 4 cut(s) 94, 180, 196, 211
BstDEI CTNAG 2 cut(s) 320, 492
BstFNI CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
BstH2I RGCGCY 2 cut(s) 63, 331
BstHHI GCGC 9 cut(s) 62, 78, 120, 146, 159, 211, 213, 330, 393
BstKTI GATC 2 cut(s) 291, 526
BstMBI GATC 2 cut(s) 288, 523
BstSCI CCNGG 2 cut(s) 291, 330
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
BstV1I GCAGC 1 cut(s) 144
BsuRI GGCC 6 cut(s) 170, 188, 203, 221, 254, 314
BtgZI GCGATG 1 cut(s) 365
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 4 cut(s) 94, 180, 196, 211
CfoI GCGC 9 cut(s) 62, 78, 120, 146, 159, 211, 213, 330, 393
Cfr10I RCCGGY 1 cut(s) 517
CseI GACGC 2 cut(s) 271, 397
Csp6I GTAC 2 cut(s) 112, 412
CviQI GTAC 2 cut(s) 112, 412
DdeI CTNAG 2 cut(s) 320, 492
DpnI GATC 2 cut(s) 290, 525
DpnII GATC 2 cut(s) 288, 523
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 219, 252
EciI GGCGGA 4 cut(s) 50, 70, 416, 521
Eco24I GRGCYC 2 cut(s) 52, 513
Eco88I CYCGRG 1 cut(s) 533
EcoT38I GRGCYC 2 cut(s) 52, 513
FalI AAGNNNNNCTT 4 cut(s) 539, 571, 551, 583
FriOI GRGCYC 2 cut(s) 52, 513
FspBI CTAG 2 cut(s) 45, 598
GlaI GCGC 9 cut(s) 61, 77, 119, 145, 158, 210, 212, 329, 392
GsuI CTGGAG 2 cut(s) 248, 263
HaeII RGCGCY 2 cut(s) 63, 331
HaeIII GGCC 6 cut(s) 170, 188, 203, 221, 254, 314
HapII CCGG 3 cut(s) 293, 331, 518
HgaI GACGC 2 cut(s) 271, 397
HhaI GCGC 9 cut(s) 62, 78, 120, 146, 159, 211, 213, 330, 393
Hin6I GCGC 9 cut(s) 60, 76, 118, 144, 157, 209, 211, 328, 391
HinP1I GCGC 9 cut(s) 60, 76, 118, 144, 157, 209, 211, 328, 391
HinfI GANTC 2 cut(s) 371, 452
HpaII CCGG 3 cut(s) 293, 331, 518
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 367, 495
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 229, 265, 295
HpyCH4III ACNGT 1 cut(s) 446
HpyF3I CTNAG 2 cut(s) 320, 492
HspAI GCGC 9 cut(s) 60, 76, 118, 144, 157, 209, 211, 328, 391
Kzo9I GATC 2 cut(s) 288, 523
LmnI GCTCC 4 cut(s) 57, 106, 238, 508
LpnPI CCDG 7 cut(s) 100, 212, 227, 276, 306, 344, 531
Lsp1109I GCAGC 1 cut(s) 144
MaeI CTAG 2 cut(s) 45, 598
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 290, 525
MbiI CCGCTC 1 cut(s) 194
MboI GATC 2 cut(s) 288, 523
MboII GAAGA 6 cut(s) 22, 25, 259, 370, 388, 391
MhlI GDGCHC 3 cut(s) 52, 513, 567
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 1 cut(s) 589
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 345
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 558, 582
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 3 cut(s) 293, 331, 518
MspR9I CCNGG 2 cut(s) 293, 332
MvnI CGCG 7 cut(s) 120, 144, 159, 211, 282, 287, 391
NciI CCSGG 2 cut(s) 293, 332
NdeII GATC 2 cut(s) 288, 523
NlaIV GGNNCC 3 cut(s) 297, 510, 564
NmeAIII GCCGAG 7 cut(s) 31, 97, 151, 208, 229, 247, 340
NmuCI GTSAC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 287
PalAI GGCGCGCC 1 cut(s) 209
PauI GCGCGC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PfeI GAWTC 1 cut(s) 452
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PspN4I GGNNCC 3 cut(s) 297, 510, 564
PteI GCGCGC 1 cut(s) 209
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 2 cut(s) 113, 413
RsaNI GTAC 2 cut(s) 112, 412
SaqAI TTAA 2 cut(s) 558, 582
Sau3AI GATC 2 cut(s) 288, 523
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 293, 332
SduI GDGCHC 3 cut(s) 52, 513, 567
SetI ASST 7 cut(s) 228, 243, 276, 306, 321, 473, 564
SgsI GGCGCGCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 1 cut(s) 589
SspMI CTAG 2 cut(s) 45, 598
StyD4I CCNGG 2 cut(s) 291, 330
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 3 cut(s) 374, 434, 455
TasI AATT 1 cut(s) 589
TatI WGTACW 1 cut(s) 111
TauI GCSGC 9 cut(s) 7, 44, 149, 191, 194, 282, 347, 350, 401
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 2 cut(s) 558, 582
Tru9I TTAA 2 cut(s) 558, 582
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 323
XspI CTAG 2 cut(s) 45, 598
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.