Rorug06G0124500

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008369
Physical Location & Seq
Forward (+)
17241039 .. 17242314
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0124500.1

Sequence Viewer

Length: 699 bp
ATGCGTGAAAAAGCTGCAATCCTTTCAAATGTAAAATTGGAACAAGGATCTGTGACAACACTAATCGAGGAAAAGGGCACTATCAAAAGAGTCATTTACAAGAACAAGGCTGGAGAGGACTACATGAGAACATATGCTCCACTAATAATAGTGTGTGATGGCTGCTTTTCAAATCTGCTCAAATCTCTCAGTGCACCAAAGGATGAAAGCCCCTCTTGTTTTGTTTCTTTTGATCTTGGAGAACTGTTCCCCCCACAACTGTACAATGCTTTTATGGCCGCTGTCAACAAGAGAAATATCAGATCCATGCAAAACAAAAGCATGGCTGCTAATCCTCTTCCCACTCCTGGTGCAATTTTATTGGGTGATTCATTCAACATGAGACATCCTTTAACCGGAGGAGGTATGACTCTGGCTCTTTCAGACATAGTTCTTCTCCGTGATCTTCTTAGACCCCTATGTGTTCTCAATGATGCACCTGCTTTGTGTAATTACCTTGAATCATTTTATACACTGCGTAAGCCTGTGTCATCCACCATAAACGCATTGGCAGGTGCTTTGTACAAGGTGTTTTGTGCATCACCAGACCCAGCAAGACAGGAAATGCGTGAAGCATGTTACGGCTATTTGAGCCTTGGAGGCATCTGTTCATATGGACCAAAATATCCCTTCTCTCTGGTCTTAACCCTCGTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ccdc124

Protein Analysis

232

Amino Acids

25.43

Weight (kDa)

8.73

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SE PF08491 83 - 220 1.6e-49 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 487, 542
Acc36I ACCTGC 2 cut(s) 487, 542
AciI CCGC 1 cut(s) 279
AclWI GGATC 2 cut(s) 55, 297
AcoI YGGCCR 1 cut(s) 276
AfaI GTAC 2 cut(s) 263, 563
AfiI CCNNNNNNNGG 2 cut(s) 347, 395
AgsI TTSAA 4 cut(s) 27, 171, 376, 500
AjnI CCWGG 1 cut(s) 346
AloI GAACNNNNNNTCC 2 cut(s) 121, 153
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 376
Alw44I GTGCAC 1 cut(s) 192
AlwI GGATC 2 cut(s) 55, 297
AoxI GGCC 1 cut(s) 276
ApaLI GTGCAC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 14, 162, 326
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 2 cut(s) 377, 573
AvaII GGWCC 1 cut(s) 656
BaeGI GKGCMC 2 cut(s) 80, 196
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 149, 313
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 637
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 376
BfuAI ACCTGC 2 cut(s) 487, 542
BglI GCCNNNNNGGC 1 cut(s) 639
BisI GCNGC 4 cut(s) 15, 163, 279, 327
BlsI GCNGC 4 cut(s) 16, 164, 280, 328
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 656
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 3 cut(s) 463, 587, 651
BpmI CTGGAG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 634
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 395
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 634
BseGI GGATG 3 cut(s) 208, 385, 530
BseLI CCNNNNNNNGG 2 cut(s) 347, 395
BseMII CTCAG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 414
BseSI GKGCMC 2 cut(s) 80, 196
BseXI GCAGC 2 cut(s) 149, 313
BseYI CCCAGC 1 cut(s) 589
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 347, 395
BsmAI GTCTC 1 cut(s) 376
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 80, 196
Bsp1407I TGTACA 2 cut(s) 261, 561
Bsp143I GATC 4 cut(s) 47, 232, 302, 442
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 201
BspMI ACCTGC 2 cut(s) 487, 542
BspPI GGATC 2 cut(s) 55, 297
BsrGI TGTACA 2 cut(s) 261, 561
BssECI CCNNGG 1 cut(s) 634
BssMI GATC 4 cut(s) 47, 232, 302, 442
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 246, 261
Bst6I CTCTTC 1 cut(s) 342
BstAUI TGTACA 2 cut(s) 261, 561
BstDEI CTNAG 2 cut(s) 188, 449
BstF5I GGATG 3 cut(s) 208, 385, 530
BstKTI GATC 4 cut(s) 50, 235, 305, 445
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 4 cut(s) 47, 232, 302, 442
BstMWI GCNNNNNNNGC 3 cut(s) 275, 630, 639
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 1 cut(s) 346
BstSLI GKGCMC 2 cut(s) 80, 196
BstV1I GCAGC 2 cut(s) 149, 313
BstX2I RGATCY 2 cut(s) 47, 302
BstYI RGATCY 2 cut(s) 47, 302
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 3 cut(s) 208, 385, 530
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 196, 512
BveI ACCTGC 2 cut(s) 487, 542
Cfr13I GGNCC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 262, 562
CviAII CATG 5 cut(s) 124, 307, 322, 379, 615
CviQI GTAC 2 cut(s) 262, 562
DdeI CTNAG 2 cut(s) 188, 449
DpnI GATC 4 cut(s) 49, 234, 304, 444
DpnII GATC 4 cut(s) 47, 232, 302, 442
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 5 cut(s) 127, 310, 325, 382, 618
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FatI CATG 5 cut(s) 123, 306, 321, 378, 614
FauNDI CATATG 2 cut(s) 133, 652
Fnu4HI GCNGC 4 cut(s) 15, 163, 279, 327
FokI GGATG 3 cut(s) 215, 372, 517
Fsp4HI GCNGC 4 cut(s) 15, 163, 279, 327
GluI GCNGC 4 cut(s) 15, 163, 279, 327
GsaI CCCAGC 1 cut(s) 593
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 396
Hin1II CATG 5 cut(s) 127, 310, 325, 382, 618
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 4 cut(s) 90, 368, 409, 500
HpaII CCGG 1 cut(s) 396
HphI GGTGA 2 cut(s) 377, 573
Hpy166II GTNNAC 3 cut(s) 194, 286, 694
Hpy188I TCNGA 2 cut(s) 302, 424
Hpy8I GTNNAC 3 cut(s) 194, 286, 694
HpyAV CCTTC 1 cut(s) 679
HpyCH4III ACNGT 2 cut(s) 246, 261
HpyCH4V TGCA 6 cut(s) 17, 194, 310, 353, 476, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 630, 639
HpyF3I CTNAG 2 cut(s) 188, 449
Hsp92II CATG 5 cut(s) 127, 310, 325, 382, 618
Kzo9I GATC 4 cut(s) 47, 232, 302, 442
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 2 cut(s) 149, 313
LweI GCATC 3 cut(s) 463, 587, 651
MaeIII GTNAC 2 cut(s) 52, 617
MalI GATC 4 cut(s) 49, 234, 304, 444
MboI GATC 4 cut(s) 47, 232, 302, 442
MboII GAAGA 3 cut(s) 329, 425, 437
MflI RGATCY 2 cut(s) 47, 302
MhlI GDGCHC 2 cut(s) 80, 196
MluCI AATT 3 cut(s) 35, 354, 490
MlyI GAGTC 2 cut(s) 99, 403
MnlI CCTC 8 cut(s) 61, 109, 223, 345, 392, 395, 632, 698
MseI TTAA 2 cut(s) 392, 683
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 3 cut(s) 275, 630, 639
NdeI CATATG 2 cut(s) 133, 652
NdeII GATC 4 cut(s) 47, 232, 302, 442
NlaIII CATG 5 cut(s) 127, 310, 325, 382, 618
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 1 cut(s) 618
PaqCI CACCTGC 2 cut(s) 487, 542
PfeI GAWTC 2 cut(s) 368, 500
PkrI GCNGC 4 cut(s) 16, 164, 280, 328
PleI GAGTC 2 cut(s) 98, 403
PpsI GAGTC 2 cut(s) 98, 403
Psp6I CCWGG 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 1 cut(s) 346
PspPI GGNCC 1 cut(s) 656
PsuI RGATCY 2 cut(s) 47, 302
RsaI GTAC 2 cut(s) 263, 563
RsaNI GTAC 2 cut(s) 262, 562
SaqAI TTAA 2 cut(s) 392, 683
SatI GCNGC 4 cut(s) 15, 163, 279, 327
Sau3AI GATC 4 cut(s) 47, 232, 302, 442
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 2 cut(s) 99, 403
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 2 cut(s) 80, 196
SetI ASST 6 cut(s) 16, 406, 481, 498, 556, 570
SfaNI GCATC 3 cut(s) 463, 587, 651
SinI GGWCC 1 cut(s) 656
Sse9I AATT 3 cut(s) 35, 354, 490
SsiI CCGC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 2 cut(s) 246, 261
TaqI TCGA 1 cut(s) 66
TasI AATT 3 cut(s) 35, 354, 490
TatI WGTACW 2 cut(s) 261, 561
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 2 cut(s) 368, 500
Tru1I TTAA 2 cut(s) 392, 683
Tru9I TTAA 2 cut(s) 392, 683
TscAI CASTG 2 cut(s) 196, 519
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 3 cut(s) 14, 162, 326
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 3 cut(s) 219, 360, 639
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 2 cut(s) 196, 519
VneI GTGCAC 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 656
XceI RCATGY 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.