AT1G16560

Per1-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007052
Physical Location & Seq
Forward (+)
5668384 .. 5670708
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16560.4

Sequence Viewer

Length: 1029 bp
ATGGCAGTCCACTACTGGACAGCCCTGTTTCTATTGTTGCCATGCCTTTTCTGTATTTCAAATGCTAGTGCTGGCGATGCTGATCCAGATTACAGGACATGTGTTTCAGAATGTGAGATAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCCGATGGTGGTCCATGGTACATCCAAGAACCTTTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATTGCCGTTATCAATGTATGGTTAATAGAGAGACTGAACGGGAAACTCTCGGTCAAGCCCCAGTCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTGTTGCTTTCTCTGTACTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCATGATCTACTATAAGTTGCCTCTGAAACAAGATAGGACAGCGTACTATGAATACGTTGGTTTGTGGCATATCTACGGTCTCCTGTCCATGAACTCTTGGTTCTGGAGTGCTGTTTTCCACAGCCGGGATGTTGACCTTACAGAGAGGTTGGACTACTCATCCGCAGTAGCGATTCTCGGATTCTCACTCATCTTAGCCATTTTACGAACATTTGATATTCGGGTTGAGGCTGCAAGGGTCATGGTATCCGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTACAAACTCGACTATGGCTGGAACATGATTGTGTGTGTGGCAATGGGAGTCTCACAGCTTTTCCTATGGGCAAGATGGGCCGCTGTCTCAAGCCACCCTTCTAATTGGAAACTTTGGGTGGTTGTGATAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGCTACTTCGATGCTCACTCGATCTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGGAGCTTCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACGAAGGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

342

Amino Acids

39.37

Weight (kDa)

7.1

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 61 - 271 1.4e-70 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 951
AccBSI CCGCTC 1 cut(s) 668
AciI CCGC 4 cut(s) 123, 579, 666, 795
AclWI GGATC 1 cut(s) 77
AfaI GTAC 5 cut(s) 185, 305, 333, 372, 461
AfiI CCNNNNNNNGG 3 cut(s) 541, 893, 951
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 60, 325
AluBI AGCT 4 cut(s) 680, 772, 845, 960
AluI AGCT 4 cut(s) 680, 772, 845, 960
Alw26I GTCTC 5 cut(s) 260, 500, 769, 805, 963
AlwI GGATC 1 cut(s) 77
AoxI GGCC 2 cut(s) 317, 792
ApeKI GCWGC 2 cut(s) 647, 926
AspS9I GGNCC 3 cut(s) 176, 318, 792
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 634, 913
BccI CCATC 2 cut(s) 164, 783
BceAI ACGGC 1 cut(s) 225
BciVI GTATCC 1 cut(s) 673
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 5 cut(s) 260, 500, 769, 805, 963
BfaI CTAG 4 cut(s) 66, 380, 677, 866
BfuI GTATCC 1 cut(s) 673
BisI GCNGC 3 cut(s) 648, 795, 927
BlsI GCNGC 3 cut(s) 649, 796, 928
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 3 cut(s) 176, 318, 792
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 3 cut(s) 67, 895, 964
BmuI ACTGGG 1 cut(s) 290
BpmI CTGGAG 2 cut(s) 541, 867
BpuEI CTTGAG 2 cut(s) 787, 986
BpuMI CCSGG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 3 cut(s) 179, 307, 394
Bsc4I CCNNNNNNNGG 3 cut(s) 541, 893, 951
Bse1I ACTGG 2 cut(s) 20, 296
Bse3DI GCAATG 2 cut(s) 390, 762
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 179, 307, 394
BseGI GGATG 4 cut(s) 164, 186, 550, 575
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 541, 893, 951
BseMI GCAATG 2 cut(s) 390, 762
BseMII CTCAG 2 cut(s) 164, 969
BseNI ACTGG 2 cut(s) 20, 296
BseRI GAGGAG 1 cut(s) 989
BseXI GCAGC 2 cut(s) 634, 913
BshFI GGCC 2 cut(s) 319, 794
BsiSI CCGG 1 cut(s) 541
BslI CCNNNNNNNGG 3 cut(s) 541, 893, 951
BsmAI GTCTC 5 cut(s) 260, 500, 769, 805, 963
BsmBI CGTCTC 1 cut(s) 963
BsnI GGCC 2 cut(s) 319, 794
Bso31I GGTCTC 1 cut(s) 500
Bsp143I GATC 3 cut(s) 82, 420, 915
Bsp19I CCATGG 3 cut(s) 179, 307, 394
BspACI CCGC 4 cut(s) 123, 579, 666, 795
BspANI GGCC 2 cut(s) 319, 794
BspCNI CTCAG 2 cut(s) 163, 970
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 668
BsrDI GCAATG 2 cut(s) 390, 762
BsrI ACTGG 2 cut(s) 20, 296
BssECI CCNNGG 3 cut(s) 179, 307, 394
BssMI GATC 3 cut(s) 82, 420, 915
BssT1I CCWWGG 3 cut(s) 179, 307, 394
Bst4CI ACNGT 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 73, 351, 924
BstDEI CTNAG 4 cut(s) 150, 610, 978, 1011
BstDSI CCRYGG 3 cut(s) 179, 307, 394
BstF5I GGATG 4 cut(s) 164, 186, 550, 575
BstKTI GATC 3 cut(s) 85, 423, 918
BstMAI GTCTC 5 cut(s) 260, 500, 769, 805, 963
BstMBI GATC 3 cut(s) 82, 420, 915
BstMWI GCNNNNNNNGC 4 cut(s) 77, 325, 359, 791
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 634, 913
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 2 cut(s) 319, 794
BtgI CCRYGG 3 cut(s) 179, 307, 394
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 4 cut(s) 164, 186, 550, 575
BtsIMutI CAGTG 1 cut(s) 158
Cac8I GCNNGC 3 cut(s) 73, 351, 924
CciI TCATGA 1 cut(s) 417
Cfr13I GGNCC 3 cut(s) 176, 318, 792
Csp6I GTAC 5 cut(s) 184, 304, 332, 371, 460
CviQI GTAC 5 cut(s) 184, 304, 332, 371, 460
DdeI CTNAG 4 cut(s) 150, 610, 978, 1011
DpnI GATC 3 cut(s) 84, 422, 917
DpnII GATC 3 cut(s) 82, 420, 915
Eco130I CCWWGG 3 cut(s) 179, 307, 394
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 176
EcoT14I CCWWGG 3 cut(s) 179, 307, 394
EcoT22I ATGCAT 1 cut(s) 390
ErhI CCWWGG 3 cut(s) 179, 307, 394
Esp3I CGTCTC 1 cut(s) 963
FalI AAGNNNNNCTT 2 cut(s) 796, 828
FauNDI CATATG 1 cut(s) 889
Fnu4HI GCNGC 3 cut(s) 648, 795, 927
FokI GGATG 4 cut(s) 151, 173, 557, 562
Fsp4HI GCNGC 3 cut(s) 648, 795, 927
FspBI CTAG 4 cut(s) 66, 380, 677, 866
GluI GCNGC 3 cut(s) 648, 795, 927
GsuI CTGGAG 2 cut(s) 541, 867
HaeIII GGCC 2 cut(s) 319, 794
HapII CCGG 1 cut(s) 541
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 4 cut(s) 340, 589, 597, 762
HpaII CCGG 1 cut(s) 541
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 10, 332, 550
Hpy188I TCNGA 5 cut(s) 109, 169, 441, 596, 986
Hpy188III TCNNGA 6 cut(s) 86, 344, 418, 520, 866, 1003
Hpy8I GTNNAC 3 cut(s) 10, 332, 550
HpyAV CCTTC 4 cut(s) 331, 822, 887, 1012
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 3 cut(s) 156, 388, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 325, 359, 791
HpyF3I CTNAG 4 cut(s) 150, 610, 978, 1011
HpySE526I ACGT 1 cut(s) 471
Kzo9I GATC 3 cut(s) 82, 420, 915
LmnI GCTCC 3 cut(s) 346, 673, 957
Lsp1109I GCAGC 2 cut(s) 634, 913
LweI GCATC 3 cut(s) 67, 895, 964
MaeI CTAG 4 cut(s) 66, 380, 677, 866
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 685
MalI GATC 3 cut(s) 84, 422, 917
MbiI CCGCTC 1 cut(s) 668
MboI GATC 3 cut(s) 82, 420, 915
MboII GAAGA 1 cut(s) 153
MluCI AATT 3 cut(s) 157, 817, 933
MlyI GAGTC 1 cut(s) 771
MmeI TCCRAC 2 cut(s) 112, 546
MnlI CCTC 8 cut(s) 159, 447, 555, 637, 842, 894, 1007, 1010
Mph1103I ATGCAT 1 cut(s) 390
MseI TTAA 2 cut(s) 258, 941
MslI CAYNNNNRTG 2 cut(s) 393, 743
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 1 cut(s) 541
MspR9I CCNGG 1 cut(s) 542
MwoI GCNNNNNNNGC 4 cut(s) 77, 325, 359, 791
NciI CCSGG 1 cut(s) 542
NcoI CCATGG 3 cut(s) 179, 307, 394
NdeI CATATG 1 cut(s) 889
NdeII GATC 3 cut(s) 82, 420, 915
NlaIV GGNNCC 1 cut(s) 348
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 102
PagI TCATGA 1 cut(s) 417
PciI ACATGT 1 cut(s) 98
PfeI GAWTC 3 cut(s) 340, 589, 597
PflMI CCANNNNNTGG 1 cut(s) 951
PkrI GCNGC 3 cut(s) 649, 796, 928
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
PscI ACATGT 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 3 cut(s) 176, 318, 792
RsaI GTAC 5 cut(s) 185, 305, 333, 372, 461
RsaNI GTAC 5 cut(s) 184, 304, 332, 371, 460
RseI CAYNNNNRTG 2 cut(s) 393, 743
SaqAI TTAA 2 cut(s) 258, 941
SatI GCNGC 3 cut(s) 648, 795, 927
Sau3AI GATC 3 cut(s) 82, 420, 915
Sau96I GGNCC 3 cut(s) 176, 318, 792
SchI GAGTC 1 cut(s) 771
ScrFI CCNGG 1 cut(s) 542
SfaNI GCATC 3 cut(s) 67, 895, 964
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 393, 743
SmlI CTYRAG 2 cut(s) 802, 1001
SmoI CTYRAG 2 cut(s) 802, 1001
Sse9I AATT 3 cut(s) 157, 817, 933
SsiI CCGC 4 cut(s) 123, 579, 666, 795
SspMI CTAG 4 cut(s) 66, 380, 677, 866
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 3 cut(s) 179, 307, 394
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 1 cut(s) 474
TaqI TCGA 3 cut(s) 723, 903, 914
TaqII GACCGA 1 cut(s) 275
TasI AATT 3 cut(s) 157, 817, 933
TatI WGTACW 2 cut(s) 331, 370
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 3 cut(s) 340, 589, 597
Tru1I TTAA 2 cut(s) 258, 941
Tru9I TTAA 2 cut(s) 258, 941
TscAI CASTG 1 cut(s) 158
TseI GCWGC 2 cut(s) 647, 926
TspDTI ATGAA 6 cut(s) 153, 403, 480, 521, 906, 952
TspRI CASTG 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 951
VpaK11BI GGWCC 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 1 cut(s) 102
XspI CTAG 4 cut(s) 66, 380, 677, 866
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.