Rh5AG184800

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007052
Physical Location & Seq
Forward (+)
21128138 .. 21132514
4377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG184800.1

Sequence Viewer

Length: 777 bp
ATGGTTGACAGAGAGAAAGAAAGAGAAGCAGCTGGTTATGGCCCAGTCAAATATCATGGTAAATGGCCCTTCAAGCGCGTTTATGGAATCCAGGAGCCTGCTTCTGTAGCTTTCTCTGCGCTCAACCTTGCTATGCATTTTCATGGTTGGGTATCACTTATCATCCTTTTATTCTATAAGTTACCATTGAGACGAGATAAGAAGGCATATTATGACTATGCCGGTTTGTGGCATATATATGGTTTCTTATCCTTGAACAGCTGGTTCTGGAGTGCTGTTTTCCATAGTAGAGATGTGGATTTGACCGAAAAATTAGATTACTCAGCTGCAGTGGCATTACTTGGGTACTCGCTCATTCTTGCCATACTCAGAAGTTTTGACGTGAGGGATGATGCTGTCAGAGTTATGGTTGCTGCTCCACTGCTTGCTTTTGTAACTACCCACATATTGTATCTCAACTTTTATAAACTGGATTATGGTTGGAACATGAAAGTTTGTGTTGTCATGGCGGTGGCTCAACTTCTTATCTGGGCGGTTTGGGCTGGTGTCACCCGCCATCCATCTCGTTGGAAATTGTGGCTGGTAGTAGTTGGAGGCGGTCTTGCAATGCTCCTAGAAATCTATGATTTCCCCCCATATGAAGGATTTCTGGATGCTCATGCGGTCTGGCATGCCACCACCATCCCCCTAACTTACATTTGGTGGAGTTTCATCAGAGACGACGCTGAGTTCCTAACCTCTAACCAAGTAAAGAAGCTGGCAAAGAAGGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

258

Amino Acids

29.83

Weight (kDa)

9.2

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 2 - 242 9.8e-87 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccII CGCG 1 cut(s) 78
AciI CCGC 5 cut(s) 509, 533, 553, 597, 662
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 228, 641
AgsI TTSAA 2 cut(s) 73, 256
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 5 cut(s) 32, 110, 261, 326, 757
AluI AGCT 5 cut(s) 32, 110, 261, 326, 757
Alw26I GTCTC 2 cut(s) 184, 711
AoxI GGCC 2 cut(s) 40, 65
ApeKI GCWGC 3 cut(s) 29, 326, 413
Asp700I GAANNNNTTC 1 cut(s) 645
AspLEI GCGC 2 cut(s) 78, 121
AspS9I GGNCC 2 cut(s) 41, 66
AsuHPI GGTGA 1 cut(s) 541
BbvI GCAGC 3 cut(s) 41, 313, 400
BccI CCATC 3 cut(s) 564, 568, 689
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 184, 711
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 2 cut(s) 105, 327
BisI GCNGC 3 cut(s) 30, 327, 414
BlsI GCNGC 3 cut(s) 31, 328, 415
Bme1390I CCNGG 1 cut(s) 92
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 41, 66
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 382, 643
BmuI ACTGGG 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 641
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 44, 474
Bse3DI GCAATG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 5 cut(s) 162, 394, 556, 658, 681
BseLI CCNNNNNNNGG 2 cut(s) 228, 641
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 3 cut(s) 336, 382, 717
BseNI ACTGG 2 cut(s) 44, 474
BseXI GCAGC 3 cut(s) 41, 313, 400
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 42, 67
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 228, 641
BsmAI GTCTC 2 cut(s) 184, 711
BsmBI CGTCTC 2 cut(s) 184, 711
BsnI GGCC 2 cut(s) 42, 67
BspACI CCGC 5 cut(s) 509, 533, 553, 597, 662
BspANI GGCC 2 cut(s) 42, 67
BspCNI CTCAG 3 cut(s) 335, 381, 718
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 2 cut(s) 44, 474
BssAI RCCGGY 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 92
BstC8I GCNNGC 4 cut(s) 99, 426, 672, 759
BstDEI CTNAG 3 cut(s) 322, 368, 726
BstF5I GGATG 5 cut(s) 162, 394, 556, 658, 681
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 78, 121
BstMAI GTCTC 2 cut(s) 184, 711
BstMWI GCNNNNNNNGC 6 cut(s) 73, 107, 116, 332, 539, 767
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 2 cut(s) 105, 327
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 41, 313, 400
BstXI CCANNNNNNTGG 1 cut(s) 567
BsuRI GGCC 2 cut(s) 42, 67
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 5 cut(s) 162, 394, 556, 658, 681
BtsI GCAGTG 2 cut(s) 336, 419
BtsIMutI CAGTG 2 cut(s) 336, 419
Cac8I GCNNGC 4 cut(s) 99, 426, 672, 759
CfoI GCGC 2 cut(s) 78, 121
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 41, 66
CseI GACGC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 346
CviAII CATG 6 cut(s) 56, 143, 487, 505, 659, 671
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 3 cut(s) 322, 368, 726
EcoRII CCWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 138
Esp3I CGTCTC 2 cut(s) 184, 711
FaeI CATG 6 cut(s) 59, 146, 490, 508, 662, 674
FatI CATG 6 cut(s) 55, 142, 486, 504, 658, 670
FauI CCCGC 1 cut(s) 560
FauNDI CATATG 1 cut(s) 637
Fnu4HI GCNGC 3 cut(s) 30, 327, 414
FokI GGATG 5 cut(s) 149, 401, 543, 665, 668
Fsp4HI GCNGC 3 cut(s) 30, 327, 414
FspBI CTAG 1 cut(s) 614
GlaI GCGC 2 cut(s) 77, 120
GluI GCNGC 3 cut(s) 30, 327, 414
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 2 cut(s) 42, 67
HapII CCGG 1 cut(s) 222
HgaI GACGC 1 cut(s) 731
HhaI GCGC 2 cut(s) 78, 121
Hin1II CATG 6 cut(s) 59, 146, 490, 508, 662, 674
Hin6I GCGC 2 cut(s) 76, 119
HinP1I GCGC 2 cut(s) 76, 119
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 371, 401, 716
Hpy188III TCNNGA 2 cut(s) 268, 650
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 725
HpyAV CCTTC 4 cut(s) 79, 196, 635, 760
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 3 cut(s) 136, 329, 605
HpyF10VI GCNNNNNNNGC 6 cut(s) 73, 107, 116, 332, 539, 767
HpyF3I CTNAG 3 cut(s) 322, 368, 726
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 6 cut(s) 59, 146, 490, 508, 662, 674
HspAI GCGC 2 cut(s) 76, 119
LmnI GCTCC 3 cut(s) 94, 421, 615
Lsp1109I GCAGC 3 cut(s) 41, 313, 400
LweI GCATC 2 cut(s) 382, 643
MaeI CTAG 1 cut(s) 614
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 3 cut(s) 180, 433, 547
MluCI AATT 2 cut(s) 311, 572
MmeI TCCRAC 3 cut(s) 461, 548, 571
MnlI CCTC 3 cut(s) 378, 587, 748
Mph1103I ATGCAT 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 645
MslI CAYNNNNRTG 3 cut(s) 141, 237, 509
MspA1I CMGCKG 3 cut(s) 32, 261, 326
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 6 cut(s) 73, 107, 116, 332, 539, 767
NdeI CATATG 1 cut(s) 637
NlaIII CATG 6 cut(s) 59, 146, 490, 508, 662, 674
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 547
NsiI ATGCAT 1 cut(s) 138
NspI RCATGY 1 cut(s) 674
PaeI GCATGC 1 cut(s) 674
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 1 cut(s) 87
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 3 cut(s) 31, 328, 415
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 41, 66
PstI CTGCAG 1 cut(s) 331
PvuII CAGCTG 3 cut(s) 32, 261, 326
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 3 cut(s) 141, 237, 509
SatI GCNGC 3 cut(s) 30, 327, 414
Sau96I GGNCC 2 cut(s) 41, 66
ScrFI CCNGG 1 cut(s) 92
SetI ASST 8 cut(s) 34, 112, 129, 263, 328, 384, 740, 759
SfaNI GCATC 2 cut(s) 382, 643
SfcI CTRYAG 2 cut(s) 105, 327
SmiMI CAYNNNNRTG 3 cut(s) 141, 237, 509
SphI GCATGC 1 cut(s) 674
Sse9I AATT 2 cut(s) 311, 572
SsiI CCGC 5 cut(s) 509, 533, 553, 597, 662
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 384
TaqII GACCGA 1 cut(s) 320
TasI AATT 2 cut(s) 311, 572
TfiI GAWTC 1 cut(s) 87
TscAI CASTG 2 cut(s) 336, 426
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 3 cut(s) 29, 326, 413
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 4 cut(s) 131, 503, 654, 700
TspRI CASTG 2 cut(s) 336, 426
XceI RCATGY 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.