Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007052

Physical Location & Seq

Genomic Coordinates Reverse (-)

15430519 .. 15431127

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGTCTAATGAACTACGGGGCCGTGGATTTGACAGAGAAATTAGACTACTCATGTGCAGTGGCAATACTTGGGTACTCGCTTATTCTGTCCATACGAAGAAGTTTTGATGTGAAAGATGACGCTGTTAGATTGATGGTTGCTGCTCCACTGCTTGCATTCGTAACCACCCACATATTGTATCTCAACTTCTATAAACTGGATTACGGGTGGAACATGCAGGTTTGTGTTGTCATGGCGGTGGTTCAACTTCTTCTTTGGGCAATTTGGGCTGGCGTCACTCGCCATCCATCACGTCGGAAGCTGTGGGTGGTAGCAGTGGGGGGAGGCCTTGCAATGCTCCTAGAAATCTACGACTTCCCTCCATATTACGGATTCTTGGATGCTCATGCTGCCTGGCATGCCACCACGATTCCCCTAACTTGTATTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Per1

Protein Analysis

145

Amino Acids

16.31

Weight (kDa)

6.88

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560
fragaria_vesca	FvH4_3g15620
malus_domestica	MD12G1008400.v1.1
prunus_persica	Prupe.4G138600_v2.0.a1 Prupe.4G138600_v2.0.a1 Prupe.4G138800_v2.0.a1
pyrus_communis	pycom05g11890
rosa_chinensis	RchiOBHm_Chr5g0026241
rosa_laevigata	RLG00000032917
rosa_multiflora	Rmu_sc0000632.1_g000006
rosa_roxburghii	Rroxscaffold_1G00053070
rosa_rugosa	Rorug05G0091800 Rorug05G0091800
rosa_samantha	Rh5AG184800 Rh5BG181700 Rh5CG200900
rosa_wichuraiana	Rw5G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AciI	CCGC	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
AoxI	GGCC	2 cut(s)	21, 328
ApeKI	GCWGC	2 cut(s)	143, 392
AspS9I	GGNCC	1 cut(s)	21
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BbvI	GCAGC	2 cut(s)	130, 379
BccI	CCATC	3 cut(s)	130, 294, 298
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	397
BfaI	CTAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	144, 393
BlsI	GCNGC	2 cut(s)	145, 394
Bme1390I	CCNGG	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	286, 388
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	130, 379
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	23, 330
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	23, 330
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	23, 330
BspLI	GGNNCC	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	156, 274, 402
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	286, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 282, 392, 401
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	2 cut(s)	220, 404
BstSCI	CCNGG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	130, 379
BsuRI	GGCC	2 cut(s)	23, 330
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	286, 388
BtsI	GCAGTG	3 cut(s)	66, 149, 324
BtsIMutI	CAGTG	3 cut(s)	66, 149, 324
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	156, 274, 402
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	2 cut(s)	131, 265
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	5 cut(s)	54, 217, 235, 389, 401
CviJI	RGCY	4 cut(s)	23, 272, 304, 330
CviKI_1	RGCY	4 cut(s)	23, 272, 304, 330
CviQI	GTAC	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	395
FaeI	CATG	5 cut(s)	57, 220, 238, 392, 404
FaiI	YATR	9 cut(s)	55, 95, 176, 195, 218, 236, 367, 390, 402
FatI	CATG	5 cut(s)	53, 216, 234, 388, 400
Fnu4HI	GCNGC	2 cut(s)	144, 393
FokI	GGATG	2 cut(s)	273, 395
Fsp4HI	GCNGC	2 cut(s)	144, 393
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	2 cut(s)	144, 393
HaeIII	GGCC	2 cut(s)	23, 330
HgaI	GACGC	2 cut(s)	131, 265
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	57, 220, 238, 392, 404
HinfI	GANTC	2 cut(s)	375, 412
Hpy188I	TCNGA	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	300
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	4 cut(s)	59, 158, 220, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 282, 392, 401
HpySE526I	ACGT	1 cut(s)	295
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	5 cut(s)	57, 220, 238, 392, 404
LmnI	GCTCC	2 cut(s)	151, 345
LpnPI	CCDG	5 cut(s)	185, 206, 258, 382, 409
Lsp1109I	GCAGC	2 cut(s)	130, 379
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	2 cut(s)	163, 277
MboII	GAAGA	2 cut(s)	111, 245
MluCI	AATT	2 cut(s)	41, 264
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	2 cut(s)	320, 372
MslI	CAYNNNNRTG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	4 cut(s)	269, 282, 392, 401
NlaIII	CATG	5 cut(s)	57, 220, 238, 392, 404
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	2 cut(s)	220, 404
PaeI	GCATGC	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	375, 412
PkrI	GCNGC	2 cut(s)	145, 394
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	21
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	2 cut(s)	144, 393
Sau96I	GGNCC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	397
SetI	ASST	3 cut(s)	225, 298, 306
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	239
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	2 cut(s)	41, 264
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	395
TaiI	ACGT	1 cut(s)	298
TasI	AATT	2 cut(s)	41, 264
TfiI	GAWTC	2 cut(s)	375, 412
TscAI	CASTG	3 cut(s)	66, 156, 324
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	143, 392
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	3 cut(s)	66, 156, 324
XceI	RCATGY	2 cut(s)	220, 404
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.