RLG00000032917

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007052
Physical Location & Seq
Forward (+)
20772028 .. 20776103
4076 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032917

Sequence Viewer

Length: 1140 bp
ATGCCTAAGAATGTGACTTGTTCAAGACTGTCACTATTGCCAAGGAAGAAGAAGAAGAAGAAGAAAGAGAGAGACAGAGGTTCCGGTGCTCCGATGTTAAAGCAGTACTGGGTTGCTTTCTTTGTGGTGGTTTTATGGGGTTTTGGATTCAGAGCTATAGATGCCAGTGCTGGTGATGCTGATCCTCGTTATAGGGCTTGTTTACAACAATGTGAAGAAACTGGATGTGTAGCGCAGAGATGCTTTCCACATTGCAATTTCTCTTCAGGTGGGGTTTCCGTTGATGGGCCATGGTTCCTGCAAGAACCTCTTTATTTGCAGTGGAAACAATGGGACTGTCAGAGTGATTGCCGTTACTATTGTATGGCTGACAGAGAGAAAGAAAGAGAAGCAGCTGGTTATGGCCCAGTCAAATATCATGGTAAATGGCCCTTCAAGCGCGTTTATGGAATCCAGGAGCCTGCTTCTGTAGCTTTCTCTGCACTCAACCTTGCTATGCATTTTCATGGTTGGGTATCATTTATCATCCTTTTATTCTATAAGTTACCATTGAGACGAGATAAGAAGGCATATTATGACTATGCCGGTTTGTGGCATATATATGGTTTCTTATCCTTGAACAGCTGGTTCTGGAGTGCTGTTTTCCATAGTAGAGATGTGGATTTGACCGAAAAATTAGATTACTCAGCTGCAGTGGCATTACTTGGGTACTCGCTCATTCTTGCCATACTCAGAAGTTTTGACGTGAGGGATGATGCTGTCAGAGTTATGGTTGCTGCTCCACTGCTTGCTTTTGTAACTACCCACATATTGTATCTCAACTTTTATAAACTGGATTATGGTTGGAACATGAAAGTTTGTGTTGTCATGGCGGTGGCTCAACTTCTTATCTGGGCGGTTTGGGCTGGTGTCACCCGCCATCCATCTCGTTGGAAATTGTGGCTGGTAGTAGTTGGAGGCAGTCTTGCAATGCTCCTAGAAATCTATGATTTCCCCCCATATGAAGGATTTCTGGATGCTCATGCGGTCTGGCATGCCACCACCATCCCCCTAACTTACATCTGGTGGAGTTTCATCAGAGACGACGCTGAGTTCCTAACCTCTAACCAAGTAAAGAAGTTGGCAAAGAAGGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

380

Amino Acids

43.82

Weight (kDa)

9.22

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 103 - 363 9.3e-99 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
AccII CGCG 1 cut(s) 441
AciI CCGC 4 cut(s) 872, 896, 916, 1025
AclWI GGATC 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 2 cut(s) 107, 710
AfiI CCNNNNNNNGG 3 cut(s) 285, 591, 1004
AgsI TTSAA 3 cut(s) 24, 436, 619
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 5 cut(s) 155, 395, 473, 624, 689
AluI AGCT 5 cut(s) 155, 395, 473, 624, 689
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 3 cut(s) 66, 547, 1074
AlwI GGATC 1 cut(s) 176
AoxI GGCC 3 cut(s) 287, 403, 428
ApeKI GCWGC 3 cut(s) 392, 689, 776
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 2 cut(s) 235, 441
AspS9I GGNCC 3 cut(s) 287, 404, 429
AsuHPI GGTGA 2 cut(s) 185, 904
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 404, 676, 763
BccI CCATC 4 cut(s) 278, 927, 931, 1052
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 455
BcoDI GTCTC 3 cut(s) 66, 547, 1074
BfaI CTAG 1 cut(s) 977
BfmI CTRYAG 3 cut(s) 156, 468, 690
BisI GCNGC 3 cut(s) 393, 690, 777
BlsI GCNGC 3 cut(s) 394, 691, 778
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 3 cut(s) 287, 404, 429
BmiI GGNNCC 3 cut(s) 82, 296, 459
BmrFI CCNGG 1 cut(s) 455
BmrI ACTGGG 2 cut(s) 118, 401
BmsI GCATC 5 cut(s) 151, 166, 230, 745, 1006
BmuI ACTGGG 2 cut(s) 118, 401
BpmI CTGGAG 1 cut(s) 652
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 41, 290
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 591, 1004
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 5 cut(s) 113, 165, 226, 407, 837
Bse3DI GCAATG 2 cut(s) 250, 975
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 41, 290
BseGI GGATG 6 cut(s) 230, 525, 757, 919, 1021, 1044
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 285, 591, 1004
BseMI GCAATG 2 cut(s) 250, 975
BseMII CTCAG 3 cut(s) 699, 745, 1080
BseNI ACTGG 5 cut(s) 113, 165, 226, 407, 837
BseXI GCAGC 3 cut(s) 404, 676, 763
BsgI GTGCAG 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 3 cut(s) 289, 405, 430
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 84, 585
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 3 cut(s) 285, 591, 1004
BsmAI GTCTC 3 cut(s) 66, 547, 1074
BsmBI CGTCTC 2 cut(s) 547, 1074
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 3 cut(s) 289, 405, 430
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 181
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 4 cut(s) 872, 896, 916, 1025
BspANI GGCC 3 cut(s) 289, 405, 430
BspCNI CTCAG 3 cut(s) 698, 744, 1081
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 82, 296, 459
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 250, 975
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 5 cut(s) 113, 165, 226, 407, 837
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 2 cut(s) 41, 290
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 2 cut(s) 41, 290
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 30, 338
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 3 cut(s) 462, 789, 1035
BstDEI CTNAG 4 cut(s) 6, 685, 731, 1089
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 6 cut(s) 230, 525, 757, 919, 1021, 1044
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 2 cut(s) 235, 441
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 3 cut(s) 66, 547, 1074
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 8 cut(s) 161, 176, 436, 470, 479, 695, 902, 1130
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 1 cut(s) 1037
BstSCI CCNGG 1 cut(s) 453
BstSFI CTRYAG 3 cut(s) 156, 468, 690
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 404, 676, 763
BstXI CCANNNNNNTGG 1 cut(s) 930
BsuRI GGCC 3 cut(s) 289, 405, 430
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 6 cut(s) 230, 525, 757, 919, 1021, 1044
BtsI GCAGTG 3 cut(s) 326, 699, 782
BtsIMutI CAGTG 4 cut(s) 172, 326, 699, 782
Cac8I GCNNGC 3 cut(s) 462, 789, 1035
CfoI GCGC 2 cut(s) 235, 441
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 287, 404, 429
CseI GACGC 1 cut(s) 1094
Csp6I GTAC 2 cut(s) 106, 709
CviAII CATG 7 cut(s) 291, 419, 506, 850, 868, 1022, 1034
CviQI GTAC 2 cut(s) 106, 709
DdeI CTNAG 4 cut(s) 6, 685, 731, 1089
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 41, 290
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 41, 290
EcoT22I ATGCAT 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 41, 290
Esp3I CGTCTC 2 cut(s) 547, 1074
FaeI CATG 7 cut(s) 294, 422, 509, 853, 871, 1025, 1037
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 1 cut(s) 347
FatI CATG 7 cut(s) 290, 418, 505, 849, 867, 1021, 1033
FauI CCCGC 1 cut(s) 923
FauNDI CATATG 1 cut(s) 1000
Fnu4HI GCNGC 3 cut(s) 393, 690, 777
FokI GGATG 6 cut(s) 237, 512, 764, 906, 1028, 1031
Fsp4HI GCNGC 3 cut(s) 393, 690, 777
FspBI CTAG 1 cut(s) 977
GlaI GCGC 2 cut(s) 234, 440
GluI GCNGC 3 cut(s) 393, 690, 777
GsuI CTGGAG 1 cut(s) 652
HaeIII GGCC 3 cut(s) 289, 405, 430
HapII CCGG 2 cut(s) 84, 585
HgaI GACGC 1 cut(s) 1094
HhaI GCGC 2 cut(s) 235, 441
Hin1II CATG 7 cut(s) 294, 422, 509, 853, 871, 1025, 1037
Hin6I GCGC 2 cut(s) 233, 439
HinP1I GCGC 2 cut(s) 233, 439
HinfI GANTC 2 cut(s) 147, 450
HpaII CCGG 2 cut(s) 84, 585
HphI GGTGA 2 cut(s) 185, 904
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 6 cut(s) 93, 152, 342, 734, 764, 1079
Hpy188III TCNNGA 3 cut(s) 24, 631, 1013
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 1088
HpyAV CCTTC 4 cut(s) 442, 559, 998, 1123
HpyCH4III ACNGT 2 cut(s) 30, 338
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 7 cut(s) 255, 301, 319, 482, 499, 692, 968
HpyF10VI GCNNNNNNNGC 8 cut(s) 161, 176, 436, 470, 479, 695, 902, 1130
HpyF3I CTNAG 4 cut(s) 6, 685, 731, 1089
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 7 cut(s) 294, 422, 509, 853, 871, 1025, 1037
HspAI GCGC 2 cut(s) 233, 439
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 4 cut(s) 94, 457, 784, 978
Lsp1109I GCAGC 3 cut(s) 404, 676, 763
LweI GCATC 5 cut(s) 151, 166, 230, 745, 1006
MaeI CTAG 1 cut(s) 977
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 6 cut(s) 13, 30, 353, 543, 796, 910
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 8 cut(s) 58, 61, 64, 67, 70, 73, 227, 255
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 3 cut(s) 256, 674, 935
MmeI TCCRAC 3 cut(s) 824, 911, 934
MnlI CCTC 6 cut(s) 71, 195, 318, 741, 950, 1111
Mph1103I ATGCAT 1 cut(s) 501
MroXI GAANNNNTTC 1 cut(s) 1008
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 3 cut(s) 504, 600, 872
MspA1I CMGCKG 3 cut(s) 395, 624, 689
MspI CCGG 2 cut(s) 84, 585
MspR9I CCNGG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 8 cut(s) 161, 176, 436, 470, 479, 695, 902, 1130
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 1000
NdeII GATC 1 cut(s) 181
NlaIII CATG 7 cut(s) 294, 422, 509, 853, 871, 1025, 1037
NlaIV GGNNCC 3 cut(s) 82, 296, 459
NmuCI GTSAC 3 cut(s) 13, 30, 910
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 1037
PaeI GCATGC 1 cut(s) 1037
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 2 cut(s) 147, 450
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 3 cut(s) 394, 691, 778
PsiI TTATAA 1 cut(s) 828
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 82, 296, 459
PspPI GGNCC 3 cut(s) 287, 404, 429
PstI CTGCAG 1 cut(s) 694
PvuII CAGCTG 3 cut(s) 395, 624, 689
RsaI GTAC 2 cut(s) 107, 710
RsaNI GTAC 2 cut(s) 106, 709
RseI CAYNNNNRTG 3 cut(s) 504, 600, 872
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 3 cut(s) 393, 690, 777
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 3 cut(s) 287, 404, 429
ScaI AGTACT 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 5 cut(s) 151, 166, 230, 745, 1006
SfcI CTRYAG 3 cut(s) 156, 468, 690
SmiMI CAYNNNNRTG 3 cut(s) 504, 600, 872
SphI GCATGC 1 cut(s) 1037
Sse9I AATT 3 cut(s) 256, 674, 935
SsiI CCGC 4 cut(s) 872, 896, 916, 1025
SspMI CTAG 1 cut(s) 977
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 2 cut(s) 41, 290
TaaI ACNGT 2 cut(s) 30, 338
TaiI ACGT 1 cut(s) 747
TaqII GACCGA 1 cut(s) 683
TasI AATT 3 cut(s) 256, 674, 935
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 2 cut(s) 147, 450
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 4 cut(s) 172, 326, 699, 789
TseFI GTSAC 3 cut(s) 13, 30, 910
TseI GCWGC 3 cut(s) 392, 689, 776
Tsp45I GTSAC 3 cut(s) 13, 30, 910
TspDTI ATGAA 4 cut(s) 494, 866, 1017, 1063
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 4 cut(s) 172, 326, 699, 789
XceI RCATGY 1 cut(s) 1037
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 1 cut(s) 977
ZrmI AGTACT 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.