FvH4_3g15620

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007052
Physical Location & Seq
Forward (+)
9803981 .. 9808249
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15620.t1

Sequence Viewer

Length: 1047 bp
ATGTTGAAGCACAACTGGGTTGCTTTCTTTGTGGTGGTTTTATGGGGTTTCAGATTCAGAGCTATAGATGCCAGTGCTGGTGATGCTGATCCTCATTATAGGGCTTGTTTACAACAATGTGAAGAAACTGGATGTGTAGCGCATAGATGCTTTCCACATTGTAATTTCTCTTCAGGTGGGGTCTCTGTTGATGGGCCATGGTTCCTGCAAGAACCTCTTTATTTGCAGTGGAAACAATGGGACTGTCAGAGTGATTGCCGTTACTATTGTATGGTTGACAGAGAAAAAGAAAGAGAAGCAGCTGGTTATGGCCCGGTTAAATATCATGGTAAATGGCCCTTCAAGCGTGTTTATGGAATCCAGGAGCCTGCCTCTGTAGCTTTCTCTGCACTCAACCTTGCTATGCATTTTCATGGTTGGGTTTCATTTATCATCCTTTTATTGTATAAGTTACCATTGAGACGAGATAAGAAGGTGTATTATGACTATGCCAGTTTGTGGCATATATATGGTTTCTTAGCCTTGAACAGCTGGTTCTGGAGTGCTGTTTTCCATAGTAGAGACGTCGATTTGACCGAAAAATTAGACTACTCAGCTGCAGTGGCATTAATTGGGTACTCGCTCATTCTTGCCATACTCAGAAGTTTTGACGTGAGGCACGATGCTGTCAGAGTTATGGTTGCTGCTCCGCTGCTTGCTTTTGTAACTACCCACATATTGTATCTCAACTTCTATAAACTGGATTATGGTTGGAACATGAAAGTTTGTGTTATCATGGCGGTGGCTCAACTTCTTATTTGGGCGGTTTGGGCTGGTATCACTCGCCATCCATCTCGTTGGAAATTGTGGTTGGTAGTAGTCGGAGGTGGGCTTGCAATGCTCCTAGAAATCTATGATTTCCCACCGTATGAAGGATTTTTGGATGCTCATGCGGTCTGGCATGCCACCACCATTCCCTTAACTTACATTTGGTGGAGTTTTATCAGAGATGATGCTGAGTTCCTAACCTCTAACCAAGTAAAGAAGTTGGCTAAGAAAGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

349

Amino Acids

40.41

Weight (kDa)

8.6

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 72 - 332 2.1e-98 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 567
AccB7I CCANNNNNTGG 1 cut(s) 498
AciI CCGC 4 cut(s) 689, 779, 803, 932
AclWI GGATC 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 156
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 2 cut(s) 498, 911
AgsI TTSAA 3 cut(s) 7, 343, 526
AjiI CACGTC 1 cut(s) 652
AjnI CCWGG 1 cut(s) 360
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
AluBI AGCT 5 cut(s) 62, 302, 380, 531, 596
AluI AGCT 5 cut(s) 62, 302, 380, 531, 596
Alw26I GTCTC 3 cut(s) 187, 454, 555
AlwI GGATC 1 cut(s) 83
AoxI GGCC 3 cut(s) 194, 310, 335
ApeKI GCWGC 4 cut(s) 299, 596, 683, 691
AseI ATTAAT 1 cut(s) 608
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 3 cut(s) 194, 311, 336
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 92
BarI GAAGNNNNNNTAC 4 cut(s) 154, 186, 713, 745
BbvI GCAGC 4 cut(s) 311, 583, 670, 678
BccI CCATC 3 cut(s) 185, 834, 838
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 3 cut(s) 187, 454, 555
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 3 cut(s) 63, 375, 597
BisI GCNGC 4 cut(s) 300, 597, 684, 692
BlsI GCNGC 4 cut(s) 301, 598, 685, 693
Bme1390I CCNGG 2 cut(s) 314, 362
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 3 cut(s) 194, 311, 336
BmiI GGNNCC 2 cut(s) 203, 366
BmrFI CCNGG 2 cut(s) 314, 362
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 6 cut(s) 58, 73, 137, 652, 913, 982
BmuI ACTGGG 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 559
BpuMI CCSGG 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 498, 911
Bse1I ACTGG 5 cut(s) 20, 72, 133, 492, 744
Bse3DI GCAATG 1 cut(s) 882
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 4 cut(s) 137, 432, 826, 928
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 498, 911
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 3 cut(s) 606, 652, 987
BseNI ACTGG 5 cut(s) 20, 72, 133, 492, 744
BseXI GCAGC 4 cut(s) 311, 583, 670, 678
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 3 cut(s) 196, 312, 337
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 498, 911
BsmAI GTCTC 3 cut(s) 187, 454, 555
BsmBI CGTCTC 2 cut(s) 454, 555
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 196, 312, 337
Bso31I GGTCTC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 4 cut(s) 689, 779, 803, 932
BspANI GGCC 3 cut(s) 196, 312, 337
BspCNI CTCAG 3 cut(s) 605, 651, 988
BspLI GGNNCC 2 cut(s) 203, 366
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 882
BsrI ACTGG 5 cut(s) 20, 72, 133, 492, 744
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 245, 906
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 564
BstC8I GCNNGC 4 cut(s) 369, 696, 873, 942
BstDEI CTNAG 5 cut(s) 517, 592, 638, 996, 1032
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 4 cut(s) 137, 432, 826, 928
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 3 cut(s) 187, 454, 555
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 9 cut(s) 68, 83, 343, 377, 386, 602, 809, 877, 1037
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 944
BstSCI CCNGG 2 cut(s) 312, 360
BstSFI CTRYAG 3 cut(s) 63, 375, 597
BstV1I GCAGC 4 cut(s) 311, 583, 670, 678
BstXI CCANNNNNNTGG 1 cut(s) 837
BsuRI GGCC 3 cut(s) 196, 312, 337
BtgI CCRYGG 1 cut(s) 197
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 4 cut(s) 137, 432, 826, 928
BtsI GCAGTG 2 cut(s) 233, 606
BtsIMutI CAGTG 3 cut(s) 79, 233, 606
Cac8I GCNNGC 4 cut(s) 369, 696, 873, 942
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 3 cut(s) 194, 311, 336
Csp6I GTAC 1 cut(s) 616
CviAII CATG 7 cut(s) 198, 326, 413, 757, 775, 929, 941
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 5 cut(s) 517, 592, 638, 996, 1032
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 197
Esp3I CGTCTC 2 cut(s) 454, 555
FaeI CATG 7 cut(s) 201, 329, 416, 760, 778, 932, 944
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 254
FatI CATG 7 cut(s) 197, 325, 412, 756, 774, 928, 940
Fnu4HI GCNGC 4 cut(s) 300, 597, 684, 692
FokI GGATG 4 cut(s) 144, 419, 813, 935
Fsp4HI GCNGC 4 cut(s) 300, 597, 684, 692
FspBI CTAG 1 cut(s) 884
GlaI GCGC 1 cut(s) 141
GluI GCNGC 4 cut(s) 300, 597, 684, 692
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 3 cut(s) 196, 312, 337
HapII CCGG 1 cut(s) 314
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 7 cut(s) 201, 329, 416, 760, 778, 932, 944
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 2 cut(s) 54, 357
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 110, 277
Hpy188I TCNGA 7 cut(s) 53, 59, 249, 641, 671, 863, 986
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 2 cut(s) 110, 277
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 3 cut(s) 349, 466, 905
HpyCH4III ACNGT 2 cut(s) 245, 906
HpyCH4IV ACGT 2 cut(s) 564, 651
HpyCH4V TGCA 6 cut(s) 208, 226, 389, 406, 599, 875
HpyF10VI GCNNNNNNNGC 9 cut(s) 68, 83, 343, 377, 386, 602, 809, 877, 1037
HpyF3I CTNAG 5 cut(s) 517, 592, 638, 996, 1032
HpySE526I ACGT 2 cut(s) 564, 651
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 7 cut(s) 201, 329, 416, 760, 778, 932, 944
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 364, 691, 885
Lsp1109I GCAGC 4 cut(s) 311, 583, 670, 678
LweI GCATC 6 cut(s) 58, 73, 137, 652, 913, 982
MaeI CTAG 1 cut(s) 884
MaeII ACGT 2 cut(s) 564, 651
MaeIII GTNAC 3 cut(s) 260, 450, 703
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 134, 162
MluCI AATT 4 cut(s) 163, 581, 609, 842
MmeI TCCRAC 3 cut(s) 731, 818, 841
MnlI CCTC 6 cut(s) 102, 225, 382, 648, 857, 1018
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 3 cut(s) 318, 608, 959
MslI CAYNNNNRTG 3 cut(s) 411, 507, 779
MspA1I CMGCKG 4 cut(s) 302, 531, 596, 691
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 314, 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 9 cut(s) 68, 83, 343, 377, 386, 602, 809, 877, 1037
NciI CCSGG 1 cut(s) 314
NcoI CCATGG 1 cut(s) 197
NdeII GATC 1 cut(s) 88
NlaIII CATG 7 cut(s) 201, 329, 416, 760, 778, 932, 944
NlaIV GGNNCC 2 cut(s) 203, 366
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 1 cut(s) 944
PaeI GCATGC 1 cut(s) 944
PcsI WCGNNNNNNNCGW 2 cut(s) 573, 657
PfeI GAWTC 2 cut(s) 54, 357
PflMI CCANNNNNTGG 1 cut(s) 498
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 4 cut(s) 301, 598, 685, 693
PshBI ATTAAT 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 203, 366
PspPI GGNCC 3 cut(s) 194, 311, 336
PstI CTGCAG 1 cut(s) 601
PvuII CAGCTG 3 cut(s) 302, 531, 596
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 3 cut(s) 411, 507, 779
SaqAI TTAA 3 cut(s) 318, 608, 959
SatI GCNGC 4 cut(s) 300, 597, 684, 692
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 3 cut(s) 194, 311, 336
ScrFI CCNGG 2 cut(s) 314, 362
SfaNI GCATC 6 cut(s) 58, 73, 137, 652, 913, 982
SfcI CTRYAG 3 cut(s) 63, 375, 597
SmiMI CAYNNNNRTG 3 cut(s) 411, 507, 779
SphI GCATGC 1 cut(s) 944
Sse9I AATT 4 cut(s) 163, 581, 609, 842
SsiI CCGC 4 cut(s) 689, 779, 803, 932
SspMI CTAG 1 cut(s) 884
StyD4I CCNGG 2 cut(s) 312, 360
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 245, 906
TaiI ACGT 2 cut(s) 567, 654
TaqI TCGA 1 cut(s) 567
TaqII GACCGA 1 cut(s) 590
TasI AATT 4 cut(s) 163, 581, 609, 842
TfiI GAWTC 2 cut(s) 54, 357
Tru1I TTAA 3 cut(s) 318, 608, 959
Tru9I TTAA 3 cut(s) 318, 608, 959
TscAI CASTG 3 cut(s) 79, 233, 606
TseI GCWGC 4 cut(s) 299, 596, 683, 691
TspDTI ATGAA 4 cut(s) 401, 414, 773, 924
TspRI CASTG 3 cut(s) 79, 233, 606
Van91I CCANNNNNTGG 1 cut(s) 498
VspI ATTAAT 1 cut(s) 608
XceI RCATGY 1 cut(s) 944
XspI CTAG 1 cut(s) 884
ZraI GACGTC 1 cut(s) 565
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.