Prupe.4G138800_v2.0.a1

post-GPI attachment to proteins factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
7748587 .. 7749712
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G138800.1

Sequence Viewer

Length: 306 bp
ATGCAAGTTTGTGTTGTCATGGCAGTAGTACAACTTCTTGTTTGGGCGATTTGGGCTGGTGTCACTCGCCATCCATCACGTTGGAAGCTGTGGCTGGTAGTAGTGGCAGGTGGCCTTGCAATGCTCCTAGAAATTTATGATTTCCCTCCATATCAAGGGTTTGTGGATGCTCATGCGGCCTGGCACGCCACCACTATTCCCCTAACTTACGTTTGGTGGAGTTTCATCAGAGATGATGCCGAGTTCCTAACCTCGAACCAAATGAAGAGGATGAAAACCTCTAACCTTGCAAAGAAGGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.62

Weight (kDa)

9.52

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 98
AciI CCGC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 132
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 155
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AoxI GGCC 2 cut(s) 112, 177
ApoI RAATTY 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BccI CCATC 2 cut(s) 78, 82
BciT130I CCWGG 1 cut(s) 181
BfaI CTAG 1 cut(s) 128
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 2 cut(s) 157, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 181
BseGI GGATG 3 cut(s) 70, 172, 276
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 126
BshFI GGCC 2 cut(s) 114, 179
BslI CCNNNNNNNGG 1 cut(s) 155
BsnI GGCC 2 cut(s) 114, 179
BspACI CCGC 1 cut(s) 176
BspANI GGCC 2 cut(s) 114, 179
BspMI ACCTGC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 186
BstF5I GGATG 3 cut(s) 70, 172, 276
BstMWI GCNNNNNNNGC 4 cut(s) 53, 176, 185, 296
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 114, 179
BtsCI GGATG 3 cut(s) 70, 172, 276
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 29
CviAII CATG 2 cut(s) 19, 173
CviJI RGCY 5 cut(s) 56, 88, 94, 114, 179
CviKI_1 RGCY 5 cut(s) 56, 88, 94, 114, 179
CviQI GTAC 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 22, 176
FaiI YATR 4 cut(s) 20, 138, 151, 174
FatI CATG 2 cut(s) 18, 172
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 3 cut(s) 57, 179, 283
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 114, 179
Hin1II CATG 2 cut(s) 22, 176
Hpy188I TCNGA 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 79, 210
HpyCH4V TGCA 3 cut(s) 4, 119, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 176, 185, 296
HpySE526I ACGT 2 cut(s) 79, 210
Hsp92II CATG 2 cut(s) 22, 176
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 42, 80, 93, 166, 193
LweI GCATC 2 cut(s) 157, 226
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 79, 210
MaeIII GTNAC 1 cut(s) 61
MboII GAAGA 1 cut(s) 277
MluCI AATT 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 4 cut(s) 156, 261, 262, 289
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 4 cut(s) 53, 176, 185, 296
NlaIII CATG 2 cut(s) 22, 176
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 61
PaqCI CACCTGC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SatI GCNGC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 181
SetI ASST 7 cut(s) 82, 90, 112, 213, 254, 281, 288
SfaNI GCATC 2 cut(s) 157, 226
Sse9I AATT 1 cut(s) 132
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 179
TaiI ACGT 2 cut(s) 82, 213
TaqI TCGA 1 cut(s) 254
TasI AATT 1 cut(s) 132
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 179
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 214, 278, 287
XapI RAATTY 1 cut(s) 132
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.