Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000632.1

Orthogroup ID

OG0007052

Physical Location & Seq

Genomic Coordinates Forward (+)

35861 .. 41215

Gene Structure 5355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000632.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atgttggtttcaatatggttgaacgagtttcaggcccagactaatttaacgtccgagcccaaactagctttagattctcgaccctttttccggcccaaacccgaaatcaatctgaacttagaagcagctgttgagctttttgaatgggtcagaccgtcactattgccaaggaagaagaagaaagagagagacagaggttccggtggtccgatgttaaagcagtactgggttgctttctttgtggtggttttatggggttttggattcagagctatagatgccagtgctggtgatgctgatcctcattatagggcttgtttacaacaatgtgaagaaactggatgtgtagcgcagagatgctttccacattgcaatttctcttcagttggggtttccgttgatgggccatggttcctgcaagaacctctttatttgcagtggaaacaatgggactgtcagagtgattgccgttactattgtatggttgacagagagaaagaaagagaagcagctggttatggcccagtcaaatatcatggtaaatggcccttcaagcgcgtttatggaatccaggagcctgcttctgtagctttctctgcgctcaaccttgctatgcattttcatggttgggtatcacttatcatccttttattctataagttaccattgagacgagataagaaggcatattatgactatgccggtttgtggcatatatatggtttcttatccttgaacagctggttctggagtgctgttttccatagtagagatgtggatttgaccgaaaaattagattactcagctgcagtggcattacttgggtactcgctcattcttgccatacttagaagttttgatgtgagggatgatgctgtcagagttatggttgctgctccactgcttgcttttgtaactacccacatattgtatctcaacttttataaactggattatggttggaacatgaaagtttgtgttgtcatggcggtggctcaacttcttatctgggcggtttgggctggtgtcacccgccatccatctcgttggaaattgtggctggtagtagttggaggcggtcttgcaatgctcctagaaatctatgatttccccccatatgaaggatttctggatgctcatgcggtctggcatgccaccaccatccccctaacttacatttggtggagtttcatcagagacgacgctgagttcctaacctctaaccaagtaaagaagctggcaaagaaggcaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Per1

Protein Analysis

418

Amino Acids

48.36

Weight (kDa)

8.69

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560 AT1G16560
fragaria_vesca	FvH4_3g15620
malus_domestica	MD12G1008400.v1.1
prunus_persica	Prupe.4G138600_v2.0.a1 Prupe.4G138600_v2.0.a1 Prupe.4G138800_v2.0.a1
pyrus_communis	pycom05g11890
rosa_chinensis	RchiOBHm_Chr5g0026241
rosa_laevigata	RLG00000032917
rosa_multiflora	Rmu_sc0000632.1_g000006
rosa_roxburghii	Rroxscaffold_1G00053070
rosa_rugosa	Rorug05G0091800 Rorug05G0091800
rosa_samantha	Rh5AG184800 Rh5BG181700 Rh5CG200900
rosa_wichuraiana	Rw5G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	945
AccII	CGCG	1 cut(s)	558
AciI	CCGC	5 cut(s)	989, 1013, 1033, 1077, 1142
AclWI	GGATC	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	224, 827
AfiI	CCNNNNNNNGG	4 cut(s)	90, 402, 708, 1121
AgsI	TTSAA	5 cut(s)	12, 22, 143, 553, 736
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	9 cut(s)	68, 128, 136, 272, 512, 590, 741, 806, 1237
AluI	AGCT	9 cut(s)	68, 128, 136, 272, 512, 590, 741, 806, 1237
Alw26I	GTCTC	3 cut(s)	183, 664, 1191
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	5 cut(s)	33, 92, 404, 520, 545
ApeKI	GCWGC	4 cut(s)	125, 509, 806, 893
Asp700I	GAANNNNTTC	1 cut(s)	1125
AspLEI	GCGC	3 cut(s)	352, 558, 601
AspS9I	GGNCC	6 cut(s)	34, 93, 206, 404, 521, 546
AsuHPI	GGTGA	2 cut(s)	302, 1021
AvaII	GGWCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	60
BbvI	GCAGC	4 cut(s)	137, 521, 793, 880
BccI	CCATC	4 cut(s)	395, 1044, 1048, 1169
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	3 cut(s)	183, 664, 1191
BfaI	CTAG	2 cut(s)	65, 1094
BfmI	CTRYAG	3 cut(s)	273, 585, 807
BisI	GCNGC	4 cut(s)	126, 510, 807, 894
BlsI	GCNGC	4 cut(s)	127, 511, 808, 895
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	572
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	6 cut(s)	34, 93, 206, 404, 521, 546
BmiI	GGNNCC	3 cut(s)	199, 413, 576
BmrFI	CCNGG	1 cut(s)	572
BmrI	ACTGGG	2 cut(s)	235, 518
BmsI	GCATC	5 cut(s)	268, 283, 347, 862, 1123
BmuI	ACTGGG	2 cut(s)	235, 518
BpmI	CTGGAG	1 cut(s)	769
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	167, 407
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 402, 708, 1121
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	5 cut(s)	230, 282, 343, 524, 954
Bse3DI	GCAATG	2 cut(s)	367, 1092
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	2 cut(s)	167, 407
BseGI	GGATG	6 cut(s)	347, 642, 874, 1036, 1138, 1161
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	4 cut(s)	90, 402, 708, 1121
BseMI	GCAATG	2 cut(s)	367, 1092
BseMII	CTCAG	2 cut(s)	816, 1197
BseNI	ACTGG	5 cut(s)	230, 282, 343, 524, 954
BseXI	GCAGC	4 cut(s)	137, 521, 793, 880
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	5 cut(s)	35, 94, 406, 522, 547
BsiSI	CCGG	3 cut(s)	91, 201, 702
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	4 cut(s)	90, 402, 708, 1121
BsmAI	GTCTC	3 cut(s)	183, 664, 1191
BsmBI	CGTCTC	2 cut(s)	664, 1191
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	5 cut(s)	35, 94, 406, 522, 547
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	5 cut(s)	989, 1013, 1033, 1077, 1142
BspANI	GGCC	5 cut(s)	35, 94, 406, 522, 547
BspCNI	CTCAG	2 cut(s)	815, 1198
BspFNI	CGCG	1 cut(s)	558
BspLI	GGNNCC	3 cut(s)	199, 413, 576
BspMAI	CTGCAG	1 cut(s)	811
BspPI	GGATC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	367, 1092
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	5 cut(s)	230, 282, 343, 524, 954
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	2 cut(s)	167, 407
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	2 cut(s)	167, 407
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	156, 455
Bst6I	CTCTTC	1 cut(s)	385
BstC8I	GCNNGC	4 cut(s)	579, 906, 1152, 1239
BstDEI	CTNAG	4 cut(s)	118, 802, 848, 1206
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	6 cut(s)	347, 642, 874, 1036, 1138, 1161
BstFNI	CGCG	1 cut(s)	558
BstHHI	GCGC	3 cut(s)	352, 558, 601
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	3 cut(s)	183, 664, 1191
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	8 cut(s)	278, 293, 553, 587, 596, 812, 1019, 1247
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	1154
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	3 cut(s)	273, 585, 807
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	4 cut(s)	137, 521, 793, 880
BstXI	CCANNNNNNTGG	1 cut(s)	1047
BsuRI	GGCC	5 cut(s)	35, 94, 406, 522, 547
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	6 cut(s)	347, 642, 874, 1036, 1138, 1161
BtsI	GCAGTG	3 cut(s)	443, 816, 899
BtsIMutI	CAGTG	4 cut(s)	289, 443, 816, 899
Cac8I	GCNNGC	4 cut(s)	579, 906, 1152, 1239
CfoI	GCGC	3 cut(s)	352, 558, 601
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	6 cut(s)	34, 93, 206, 404, 521, 546
CseI	GACGC	1 cut(s)	1211
Csp6I	GTAC	2 cut(s)	223, 826
CviAII	CATG	7 cut(s)	408, 536, 623, 967, 985, 1139, 1151
CviQI	GTAC	2 cut(s)	223, 826
DdeI	CTNAG	4 cut(s)	118, 802, 848, 1206
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	167, 407
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	167, 407
EcoT22I	ATGCAT	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	167, 407
Esp3I	CGTCTC	2 cut(s)	664, 1191
FaeI	CATG	7 cut(s)	411, 539, 626, 970, 988, 1142, 1154
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	7 cut(s)	407, 535, 622, 966, 984, 1138, 1150
FauI	CCCGC	1 cut(s)	1040
FauNDI	CATATG	1 cut(s)	1117
Fnu4HI	GCNGC	4 cut(s)	126, 510, 807, 894
FokI	GGATG	6 cut(s)	354, 629, 881, 1023, 1145, 1148
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	4 cut(s)	126, 510, 807, 894
FspBI	CTAG	2 cut(s)	65, 1094
GlaI	GCGC	3 cut(s)	351, 557, 600
GluI	GCNGC	4 cut(s)	126, 510, 807, 894
GsuI	CTGGAG	1 cut(s)	769
HaeIII	GGCC	5 cut(s)	35, 94, 406, 522, 547
HapII	CCGG	3 cut(s)	91, 201, 702
HgaI	GACGC	1 cut(s)	1211
HhaI	GCGC	3 cut(s)	352, 558, 601
Hin1II	CATG	7 cut(s)	411, 539, 626, 970, 988, 1142, 1154
Hin6I	GCGC	3 cut(s)	350, 556, 599
HinP1I	GCGC	3 cut(s)	350, 556, 599
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	3 cut(s)	74, 264, 567
HpaII	CCGG	3 cut(s)	91, 201, 702
HphI	GGTGA	2 cut(s)	302, 1021
Hpy166II	GTNNAC	2 cut(s)	320, 487
Hpy188I	TCNGA	8 cut(s)	55, 114, 152, 210, 269, 459, 881, 1196
Hpy188III	TCNNGA	3 cut(s)	78, 748, 1130
Hpy8I	GTNNAC	2 cut(s)	320, 487
Hpy99I	CGWCG	1 cut(s)	1205
HpyAV	CCTTC	4 cut(s)	559, 676, 1115, 1240
HpyCH4III	ACNGT	2 cut(s)	156, 455
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	6 cut(s)	372, 418, 436, 616, 809, 1085
HpyF10VI	GCNNNNNNNGC	8 cut(s)	278, 293, 553, 587, 596, 812, 1019, 1247
HpyF3I	CTNAG	4 cut(s)	118, 802, 848, 1206
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	7 cut(s)	411, 539, 626, 970, 988, 1142, 1154
HspAI	GCGC	3 cut(s)	350, 556, 599
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	574, 901, 1095
Lsp1109I	GCAGC	4 cut(s)	137, 521, 793, 880
LweI	GCATC	5 cut(s)	268, 283, 347, 862, 1123
MaeI	CTAG	2 cut(s)	65, 1094
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	5 cut(s)	156, 470, 660, 913, 1027
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	5 cut(s)	184, 187, 190, 344, 372
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	4 cut(s)	43, 373, 791, 1052
MmeI	TCCRAC	3 cut(s)	941, 1028, 1051
MnlI	CCTC	6 cut(s)	188, 312, 435, 858, 1067, 1228
Mph1103I	ATGCAT	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	1125
MseI	TTAA	2 cut(s)	47, 215
MslI	CAYNNNNRTG	3 cut(s)	621, 717, 989
MspA1I	CMGCKG	4 cut(s)	128, 512, 741, 806
MspI	CCGG	3 cut(s)	91, 201, 702
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	8 cut(s)	278, 293, 553, 587, 596, 812, 1019, 1247
NcoI	CCATGG	1 cut(s)	407
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	7 cut(s)	411, 539, 626, 970, 988, 1142, 1154
NlaIV	GGNNCC	3 cut(s)	199, 413, 576
NmuCI	GTSAC	2 cut(s)	156, 1027
NsiI	ATGCAT	1 cut(s)	618
NspI	RCATGY	1 cut(s)	1154
PaeI	GCATGC	1 cut(s)	1154
PdmI	GAANNNNTTC	1 cut(s)	1125
PfeI	GAWTC	3 cut(s)	74, 264, 567
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	4 cut(s)	127, 511, 808, 895
PsiI	TTATAA	1 cut(s)	945
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	3 cut(s)	199, 413, 576
PspPI	GGNCC	6 cut(s)	34, 93, 206, 404, 521, 546
PstI	CTGCAG	1 cut(s)	811
PvuII	CAGCTG	4 cut(s)	128, 512, 741, 806
RsaI	GTAC	2 cut(s)	224, 827
RsaNI	GTAC	2 cut(s)	223, 826
RseI	CAYNNNNRTG	3 cut(s)	621, 717, 989
SaqAI	TTAA	2 cut(s)	47, 215
SatI	GCNGC	4 cut(s)	126, 510, 807, 894
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	6 cut(s)	34, 93, 206, 404, 521, 546
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	5 cut(s)	268, 283, 347, 862, 1123
SfcI	CTRYAG	3 cut(s)	273, 585, 807
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	3 cut(s)	621, 717, 989
SphI	GCATGC	1 cut(s)	1154
Sse9I	AATT	4 cut(s)	43, 373, 791, 1052
SsiI	CCGC	5 cut(s)	989, 1013, 1033, 1077, 1142
SspMI	CTAG	2 cut(s)	65, 1094
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	2 cut(s)	167, 407
TaaI	ACNGT	2 cut(s)	156, 455
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	79
TaqII	GACCGA	1 cut(s)	800
TasI	AATT	4 cut(s)	43, 373, 791, 1052
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	74, 264, 567
Tru1I	TTAA	2 cut(s)	47, 215
Tru9I	TTAA	2 cut(s)	47, 215
TscAI	CASTG	4 cut(s)	289, 443, 816, 906
TseFI	GTSAC	2 cut(s)	156, 1027
TseI	GCWGC	4 cut(s)	125, 509, 806, 893
Tsp45I	GTSAC	2 cut(s)	156, 1027
TspDTI	ATGAA	4 cut(s)	611, 983, 1134, 1180
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	4 cut(s)	289, 443, 816, 906
VpaK11BI	GGWCC	1 cut(s)	206
XceI	RCATGY	1 cut(s)	1154
XmnI	GAANNNNTTC	1 cut(s)	1125
XspI	CTAG	2 cut(s)	65, 1094
ZrmI	AGTACT	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.