Rh5BG181700

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007052
Physical Location & Seq
Forward (+)
19941882 .. 19946183
4302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG181700.1

Sequence Viewer

Length: 1047 bp
ATGTTAAAGCAGTACTGGGTTGCCTTCTTTGTGGTGGTTTTATGGGGTTTTGGATTCCGAGCTATAGATGCCAGTGCTGGTGATGCTGATCCTCATTATAGGGCTTGTTTACAACAATGTGAAGAAACTGGATGTGTAGCGCAGAGATGCTTTCCACATTGCAATTTCTCTTCAGGTGGGGTTTCTGTTGATGGGCCATGGTTCCTGCAAGAACCTCTTTATTTGCAGTGGAAACAATGGGACTGTCAGAGTGATTGCCGTTACTATTGTATGGTTGACAGAGAGAAAGAAAGAGAAGCAGCTGGTTATGGCCCAGTCAAATATCATGGTAAATGGCCCTTCAAGCGCGTTTATGGAATCCAGGAGCCTGCTTCTGTAGCTTTCTCTGCGCTCAACCTTGCTATGCATTTTCATGGTTGGGTATCACTTATCATCCTTTTATTCTATAAGTTACCATTGAGACGAGATAAGAAGGCATATTATGACTATGCCGGTTTGTGGCATATATATGGTTTCTTATCCTTGAACAGCTGGTTCTGGAGTGCTGTTTTCCATAGTAGAGATGTGGATTTGACCGAAAAATTAGATTACTCAGCTGCAGTGGCATTACTTGGGTACTCGCTCATTCTTGCCATACTCAGAAGTTTTGACGTGAGGGATGATGCTGTCAGAGTTATGGTTGCTGCTCCACTGCTTGCTTTTGTAACTACCCACATATTGTATCTCAACTTTTATAAACTGGATTATGGTTGGAACATGAAAGTTTGTGTTGTCATGGCGGTGGCTCAACTTCTTATCTGGGCGGTTTGGGCTGGTGTCACCCGCCATCCATCTCGTTGGAAATTGTGGCTGGTAGTAGTTGGAGGCGGTCTTGCAATGCTCCTAGAAATCTATGATTTCCCCCCATATGAAGGATTTCTGGATGCTCATGCGGTCTGGCATGCCACCACCATCCCCCTAACTTACATTTGGTGGAGTTTCATCAGAGACGACGCTGAGTTCCTAACCTCTAACCAAGTAAAGAAGCTGGCAAAGAAGGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

348

Amino Acids

40.25

Weight (kDa)

8.27

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 72 - 332 8.7e-99 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
AccII CGCG 1 cut(s) 348
AciI CCGC 5 cut(s) 779, 803, 823, 867, 932
AclWI GGATC 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 2 cut(s) 14, 617
AfiI CCNNNNNNNGG 2 cut(s) 498, 911
AgsI TTSAA 2 cut(s) 343, 526
AjiI CACGTC 1 cut(s) 652
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 6 cut(s) 62, 302, 380, 531, 596, 1027
AluI AGCT 6 cut(s) 62, 302, 380, 531, 596, 1027
Alw26I GTCTC 2 cut(s) 454, 981
AlwI GGATC 1 cut(s) 83
AoxI GGCC 3 cut(s) 194, 310, 335
ApeKI GCWGC 3 cut(s) 299, 596, 683
Asp700I GAANNNNTTC 1 cut(s) 915
AspLEI GCGC 3 cut(s) 142, 348, 391
AspS9I GGNCC 3 cut(s) 194, 311, 336
AsuHPI GGTGA 2 cut(s) 92, 811
BbvI GCAGC 3 cut(s) 311, 583, 670
BccI CCATC 4 cut(s) 185, 834, 838, 959
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 454, 981
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 3 cut(s) 63, 375, 597
BisI GCNGC 3 cut(s) 300, 597, 684
BlsI GCNGC 3 cut(s) 301, 598, 685
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 362
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 3 cut(s) 194, 311, 336
BmiI GGNNCC 2 cut(s) 203, 366
BmrFI CCNGG 1 cut(s) 362
BmrI ACTGGG 2 cut(s) 25, 308
BmsI GCATC 5 cut(s) 58, 73, 137, 652, 913
BmuI ACTGGG 2 cut(s) 25, 308
BpmI CTGGAG 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 498, 911
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 5 cut(s) 20, 72, 133, 314, 744
Bse3DI GCAATG 2 cut(s) 157, 882
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 6 cut(s) 137, 432, 664, 826, 928, 951
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 498, 911
BseMI GCAATG 2 cut(s) 157, 882
BseMII CTCAG 3 cut(s) 606, 652, 987
BseNI ACTGG 5 cut(s) 20, 72, 133, 314, 744
BseXI GCAGC 3 cut(s) 311, 583, 670
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 3 cut(s) 196, 312, 337
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 498, 911
BsmAI GTCTC 2 cut(s) 454, 981
BsmBI CGTCTC 2 cut(s) 454, 981
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 196, 312, 337
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 5 cut(s) 779, 803, 823, 867, 932
BspANI GGCC 3 cut(s) 196, 312, 337
BspCNI CTCAG 3 cut(s) 605, 651, 988
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 203, 366
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 157, 882
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 5 cut(s) 20, 72, 133, 314, 744
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 175
BstC8I GCNNGC 4 cut(s) 369, 696, 942, 1029
BstDEI CTNAG 3 cut(s) 592, 638, 996
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 6 cut(s) 137, 432, 664, 826, 928, 951
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 3 cut(s) 142, 348, 391
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 454, 981
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 8 cut(s) 68, 83, 343, 377, 386, 602, 809, 1037
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 944
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 3 cut(s) 63, 375, 597
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 311, 583, 670
BstXI CCANNNNNNTGG 1 cut(s) 837
BsuRI GGCC 3 cut(s) 196, 312, 337
BtgI CCRYGG 1 cut(s) 197
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 6 cut(s) 137, 432, 664, 826, 928, 951
BtsI GCAGTG 3 cut(s) 233, 606, 689
BtsIMutI CAGTG 4 cut(s) 79, 233, 606, 689
Cac8I GCNNGC 4 cut(s) 369, 696, 942, 1029
CfoI GCGC 3 cut(s) 142, 348, 391
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 3 cut(s) 194, 311, 336
CseI GACGC 1 cut(s) 1001
Csp6I GTAC 2 cut(s) 13, 616
CviAII CATG 7 cut(s) 198, 326, 413, 757, 775, 929, 941
CviQI GTAC 2 cut(s) 13, 616
DdeI CTNAG 3 cut(s) 592, 638, 996
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 197
Esp3I CGTCTC 2 cut(s) 454, 981
FaeI CATG 7 cut(s) 201, 329, 416, 760, 778, 932, 944
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 254
FatI CATG 7 cut(s) 197, 325, 412, 756, 774, 928, 940
FauI CCCGC 1 cut(s) 830
FauNDI CATATG 1 cut(s) 907
Fnu4HI GCNGC 3 cut(s) 300, 597, 684
FokI GGATG 6 cut(s) 144, 419, 671, 813, 935, 938
Fsp4HI GCNGC 3 cut(s) 300, 597, 684
FspBI CTAG 1 cut(s) 884
GlaI GCGC 3 cut(s) 141, 347, 390
GluI GCNGC 3 cut(s) 300, 597, 684
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 3 cut(s) 196, 312, 337
HapII CCGG 1 cut(s) 492
HgaI GACGC 1 cut(s) 1001
HhaI GCGC 3 cut(s) 142, 348, 391
Hin1II CATG 7 cut(s) 201, 329, 416, 760, 778, 932, 944
Hin6I GCGC 3 cut(s) 140, 346, 389
HinP1I GCGC 3 cut(s) 140, 346, 389
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 2 cut(s) 54, 357
HpaII CCGG 1 cut(s) 492
HphI GGTGA 2 cut(s) 92, 811
Hpy166II GTNNAC 2 cut(s) 110, 277
Hpy188I TCNGA 5 cut(s) 59, 249, 641, 671, 986
Hpy188III TCNNGA 2 cut(s) 538, 920
Hpy8I GTNNAC 2 cut(s) 110, 277
Hpy99I CGWCG 1 cut(s) 995
HpyAV CCTTC 5 cut(s) 34, 349, 466, 905, 1030
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 6 cut(s) 162, 208, 226, 406, 599, 875
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 83, 343, 377, 386, 602, 809, 1037
HpyF3I CTNAG 3 cut(s) 592, 638, 996
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 7 cut(s) 201, 329, 416, 760, 778, 932, 944
HspAI GCGC 3 cut(s) 140, 346, 389
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 364, 691, 885
Lsp1109I GCAGC 3 cut(s) 311, 583, 670
LweI GCATC 5 cut(s) 58, 73, 137, 652, 913
MaeI CTAG 1 cut(s) 884
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 4 cut(s) 260, 450, 703, 817
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 134, 162
MluCI AATT 3 cut(s) 163, 581, 842
MmeI TCCRAC 3 cut(s) 731, 818, 841
MnlI CCTC 5 cut(s) 102, 225, 648, 857, 1018
Mph1103I ATGCAT 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 915
MseI TTAA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 411, 507, 779
MspA1I CMGCKG 3 cut(s) 302, 531, 596
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 8 cut(s) 68, 83, 343, 377, 386, 602, 809, 1037
NcoI CCATGG 1 cut(s) 197
NdeI CATATG 1 cut(s) 907
NdeII GATC 1 cut(s) 88
NlaIII CATG 7 cut(s) 201, 329, 416, 760, 778, 932, 944
NlaIV GGNNCC 2 cut(s) 203, 366
NmuCI GTSAC 1 cut(s) 817
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 1 cut(s) 944
PaeI GCATGC 1 cut(s) 944
PdmI GAANNNNTTC 1 cut(s) 915
PfeI GAWTC 2 cut(s) 54, 357
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 3 cut(s) 301, 598, 685
PsiI TTATAA 1 cut(s) 735
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 203, 366
PspPI GGNCC 3 cut(s) 194, 311, 336
PstI CTGCAG 1 cut(s) 601
PvuII CAGCTG 3 cut(s) 302, 531, 596
RsaI GTAC 2 cut(s) 14, 617
RsaNI GTAC 2 cut(s) 13, 616
RseI CAYNNNNRTG 3 cut(s) 411, 507, 779
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 3 cut(s) 300, 597, 684
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 3 cut(s) 194, 311, 336
ScaI AGTACT 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 362
SfaNI GCATC 5 cut(s) 58, 73, 137, 652, 913
SfcI CTRYAG 3 cut(s) 63, 375, 597
SmiMI CAYNNNNRTG 3 cut(s) 411, 507, 779
SphI GCATGC 1 cut(s) 944
Sse9I AATT 3 cut(s) 163, 581, 842
SsiI CCGC 5 cut(s) 779, 803, 823, 867, 932
SspMI CTAG 1 cut(s) 884
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 654
TaqII GACCGA 1 cut(s) 590
TasI AATT 3 cut(s) 163, 581, 842
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 2 cut(s) 54, 357
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 4 cut(s) 79, 233, 606, 696
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 3 cut(s) 299, 596, 683
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 4 cut(s) 401, 773, 924, 970
TspRI CASTG 4 cut(s) 79, 233, 606, 696
XceI RCATGY 1 cut(s) 944
XmnI GAANNNNTTC 1 cut(s) 915
XspI CTAG 1 cut(s) 884
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.