Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016593

Physical Location & Seq

Genomic Coordinates Forward (+)

6059389 .. 6060851

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17615.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTATTCATCATCGTCTTCTTCTTCAGCTACTCCACAAAAGTTCGACGTCTTTCTGAGTTTCAGAGGCAAGGACACTCGCAGGACCTTCATTAGCTTTCTTTACAAAGAACTCATTGAAATGGGTATTCGAACTTTCAAAGACGACGTTGAACTCCAGAGTGGTCGTCGGATTGCTTCAGATCTCCTCGCCGCGATCGAAAACTCCAAAATCGCCGTTGTGATTATCTCAAAGAATTACTCTGCGTCTCCCTGGTGTCTCCAAGAGCTAGTGATGATCATGGATGTCGAAAAGAAGGGTTCCATCATCGTTATGCCAATCTTTTACAACGTCGAGCCTGCTCATGTGAGAAGACAAATCGAACAGGTCGCTAAACAGTTTAGGAAACATGAAGGAAGGGAAAATTATGAGACTGTGGTGTCATGGAGACAAGCTCTGACCAATTTGGCCAGTATCTCCGGCCATTGTTCTCGTGATTGCGAAGATGACTCGAAGCTACTCGATGAGATAACCAAGAGAATTTCTGACATGTTATTCTCGGTAACACCACCAAGTGAGAGCATCAATAACCAACTTGGATTTGATGCACGCATGAAAGAGTTGTATCCATTGTTGGATTTGGATTCTAATGAAGGTGTGAGAGTGGTTGGAATTTGGGCAAGAGGAGGTAATGGAAGATCAGCTCTAGCTAGATACGTTTATCAAAAGATCTTTAAGAAATTCCAAAGTCATTGTTTTCTCGAAAACGTCAAAGGGATCCCTCACGATTGTCAAATGTCGAATCTAAGAGACGAGTTTCTTATCAGGATTCAAGGAGGGTACTCGAGGATGAAGACCTCAGGGTTGATAAAAAAAAGGCTCATGAGTCAGAAAGTTCTACTTGTGGCTAACAATGTCGACAAACTCGAACAGTTAGATGCTCTTGCAGAATATTTTAACTGTTTTGGTCCAGGGAGCATAGTGCTCATAACTACACAAGACAAACAACTTCTTGTTGCGTTTGGGATAAAGGTTGTGTATGAAGTTGAGTGCTTGAGATGCTTTGAAGTTCGTCAACTGTTTCGTCAAATCGGCTTTAGGGAAAGAGATCTTAATGTCGGTTCCGAGTTGTCTTCACCTATATCCGGGACTGAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

380

Amino Acids

43.24

Weight (kDa)

8.66

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 184	2.5e-54	TIR domain
TIR_2	PF13676	17 - 121	1e-15	TIR domain
NB-ARC	PF00931	207 - 362	5.3e-07	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17615 AT1G72890 AT1G72890 AT1G72900 AT1G72910 AT1G72920 AT1G72930 AT1G72940 AT1G72950
malus_domestica	MD12G1010100.v1.1
prunus_persica	Prupe.6G109900_v2.0.a1 Prupe.6G110100_v2.0.a1 Prupe.7G012000_v2.0.a1
pyrus_communis	pycom12g00780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	418
AatII	GACGTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	897
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	2 cut(s)	751, 764
AcoI	YGGCCR	2 cut(s)	447, 460
AcsI	RAATTY	3 cut(s)	519, 651, 719
AcuI	CTGAAG	2 cut(s)	9, 162
AcyI	GRCGYC	1 cut(s)	48
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	1 cut(s)	1124
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	5 cut(s)	119, 139, 152, 812, 1046
AjnI	CCWGG	2 cut(s)	251, 949
AluBI	AGCT	7 cut(s)	29, 96, 268, 434, 496, 683, 689
AluI	AGCT	7 cut(s)	29, 96, 268, 434, 496, 683, 689
Alw21I	GWGCWC	1 cut(s)	966
Alw26I	GTCTC	5 cut(s)	252, 263, 404, 421, 783
AlwI	GGATC	2 cut(s)	751, 764
Ama87I	CYCGRG	1 cut(s)	823
AoxI	GGCC	2 cut(s)	447, 460
ApoI	RAATTY	3 cut(s)	519, 651, 719
AspS9I	GGNCC	2 cut(s)	84, 947
AsuC2I	CCSGG	1 cut(s)	1126
AsuHPI	GGTGA	1 cut(s)	1107
AsuII	TTCGAA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	823
AvaII	GGWCC	2 cut(s)	84, 947
AxyI	CCTNAGG	1 cut(s)	838
BalI	TGGCCA	1 cut(s)	449
BamHI	GGATCC	1 cut(s)	756
BauI	CACGAG	1 cut(s)	471
BbsI	GAAGAC	4 cut(s)	9, 358, 839, 1104
Bbv12I	GWGCWC	1 cut(s)	966
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	253, 951
BciVI	GTATCC	1 cut(s)	615
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	1126
BcoDI	GTCTC	5 cut(s)	252, 263, 404, 421, 783
BfaI	CTAG	3 cut(s)	269, 686, 690
BfuI	GTATCC	1 cut(s)	615
BglII	AGATCT	3 cut(s)	181, 708, 1087
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	3 cut(s)	253, 951, 1126
Bme18I	GGWCC	2 cut(s)	84, 947
BmeT110I	CYCGRG	1 cut(s)	823
BmgT120I	GGNCC	2 cut(s)	84, 947
BmiI	GGNNCC	3 cut(s)	301, 758, 1102
BmrFI	CCNGG	3 cut(s)	253, 951, 1126
BmsI	GCATC	4 cut(s)	570, 574, 907, 1028
BpiI	GAAGAC	4 cut(s)	9, 358, 839, 1104
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	1054
BpuMI	CCSGG	1 cut(s)	1126
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	251, 950
Bsc4I	CCNNNNNNNGG	1 cut(s)	1124
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	838
BseBI	CCWGG	2 cut(s)	253, 951
BseDI	CCNNGG	2 cut(s)	251, 950
BseGI	GGATG	2 cut(s)	289, 834
BseLI	CCNNNNNNNGG	1 cut(s)	1124
BseMII	CTCAG	2 cut(s)	47, 852
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	176, 678
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	449, 462
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	966
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	2 cut(s)	459, 1125
BslI	CCNNNNNNNGG	1 cut(s)	1124
BsmAI	GTCTC	5 cut(s)	252, 263, 404, 421, 783
BsmBI	CGTCTC	2 cut(s)	252, 783
BsnI	GGCC	2 cut(s)	449, 462
BsoBI	CYCGRG	1 cut(s)	823
Bsp119I	TTCGAA	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	966
Bsp143I	GATC	7 cut(s)	181, 195, 276, 677, 708, 756, 1087
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	2 cut(s)	449, 462
BspCNI	CTCAG	2 cut(s)	48, 851
BspFNI	CGCG	1 cut(s)	194
BspHI	TCATGA	1 cut(s)	861
BspLI	GGNNCC	3 cut(s)	301, 758, 1102
BspPI	GGATC	2 cut(s)	751, 764
BspT104I	TTCGAA	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	251, 950
BssMI	GATC	7 cut(s)	181, 195, 276, 677, 708, 756, 1087
BssNI	GRCGYC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	253, 951
Bst4CI	ACNGT	5 cut(s)	378, 415, 912, 941, 1059
BstACI	GRCGYC	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	339, 589
BstDEI	CTNAG	3 cut(s)	56, 785, 838
BstF5I	GGATG	2 cut(s)	289, 834
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	7 cut(s)	184, 198, 279, 680, 711, 759, 1090
BstMAI	GTCTC	5 cut(s)	252, 263, 404, 421, 783
BstMBI	GATC	7 cut(s)	181, 195, 276, 677, 708, 756, 1087
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	1038
BstNI	CCWGG	2 cut(s)	253, 951
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	3 cut(s)	251, 949, 1124
BstUI	CGCG	1 cut(s)	194
BstV2I	GAAGAC	4 cut(s)	9, 358, 839, 1104
BstX2I	RGATCY	4 cut(s)	181, 708, 756, 1087
BstYI	RGATCY	4 cut(s)	181, 708, 756, 1087
Bsu36I	CCTNAGG	1 cut(s)	838
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	449, 462
BtsCI	GGATG	2 cut(s)	289, 834
Cac8I	GCNNGC	2 cut(s)	339, 589
CciI	TCATGA	1 cut(s)	861
Cfr13I	GGNCC	2 cut(s)	84, 947
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	820
CviAII	CATG	7 cut(s)	280, 344, 389, 423, 529, 592, 862
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	3 cut(s)	56, 785, 838
DpnI	GATC	7 cut(s)	183, 197, 278, 679, 710, 758, 1089
DpnII	GATC	7 cut(s)	181, 195, 276, 677, 708, 756, 1087
DraIII	CACNNNGTG	1 cut(s)	554
DrdI	GACNNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	2 cut(s)	447, 460
Eco47I	GGWCC	2 cut(s)	84, 947
Eco57I	CTGAAG	2 cut(s)	9, 162
Eco81I	CCTNAGG	1 cut(s)	838
Eco88I	CYCGRG	1 cut(s)	823
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	251, 949
Esp3I	CGTCTC	2 cut(s)	252, 783
FaeI	CATG	7 cut(s)	283, 347, 392, 426, 532, 595, 865
FalI	AAGNNNNNCTT	2 cut(s)	864, 896
FatI	CATG	7 cut(s)	279, 343, 388, 422, 528, 591, 861
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	296, 841
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	3 cut(s)	269, 686, 690
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	449, 462
HapII	CCGG	2 cut(s)	459, 1125
HgaI	GACGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	7 cut(s)	283, 347, 392, 426, 532, 595, 865
HincII	GTYRAC	2 cut(s)	898, 1055
HindII	GTYRAC	2 cut(s)	898, 1055
HinfI	GANTC	6 cut(s)	488, 623, 781, 808, 865, 1133
HpaII	CCGG	2 cut(s)	459, 1125
HphI	GGTGA	1 cut(s)	1107
Hpy166II	GTNNAC	2 cut(s)	898, 1055
Hpy188I	TCNGA	8 cut(s)	57, 65, 171, 181, 438, 526, 870, 1105
Hpy188III	TCNNGA	7 cut(s)	157, 473, 740, 764, 805, 862, 1140
Hpy8I	GTNNAC	2 cut(s)	898, 1055
Hpy99I	CGWCG	4 cut(s)	50, 149, 171, 335
HpyAV	CCTTC	5 cut(s)	97, 289, 386, 390, 626
HpyCH4III	ACNGT	5 cut(s)	378, 415, 912, 941, 1059
HpyCH4IV	ACGT	5 cut(s)	48, 147, 330, 696, 747
HpyCH4V	TGCA	2 cut(s)	587, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1038
HpyF3I	CTNAG	3 cut(s)	56, 785, 838
HpySE526I	ACGT	5 cut(s)	48, 147, 330, 696, 747
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	7 cut(s)	283, 347, 392, 426, 532, 595, 865
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	7 cut(s)	181, 195, 276, 677, 708, 756, 1087
LmnI	GCTCC	1 cut(s)	954
LweI	GCATC	4 cut(s)	570, 574, 907, 1028
MaeI	CTAG	3 cut(s)	269, 686, 690
MaeII	ACGT	5 cut(s)	48, 147, 330, 696, 747
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	7 cut(s)	183, 197, 278, 679, 710, 758, 1089
MboI	GATC	7 cut(s)	181, 195, 276, 677, 708, 756, 1087
MboII	GAAGA	9 cut(s)	9, 12, 15, 363, 494, 687, 844, 1104, 1128
MflI	RGATCY	4 cut(s)	181, 708, 756, 1087
MhlI	GDGCHC	1 cut(s)	966
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	6 cut(s)	235, 403, 442, 519, 651, 719
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	2 cut(s)	482, 874
MmeI	TCCRAC	3 cut(s)	149, 594, 628
MnlI	CCTC	8 cut(s)	59, 197, 656, 659, 771, 809, 819, 847
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	3 cut(s)	714, 936, 1092
MslI	CAYNNNNRTG	2 cut(s)	119, 311
Msp20I	TGGCCA	1 cut(s)	449
MspI	CCGG	2 cut(s)	459, 1125
MspR9I	CCNGG	3 cut(s)	253, 951, 1126
MvaI	CCWGG	2 cut(s)	253, 951
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	1038
NciI	CCSGG	1 cut(s)	1126
NdeII	GATC	7 cut(s)	181, 195, 276, 677, 708, 756, 1087
NlaIII	CATG	7 cut(s)	283, 347, 392, 426, 532, 595, 865
NlaIV	GGNNCC	3 cut(s)	301, 758, 1102
NspI	RCATGY	1 cut(s)	532
NspV	TTCGAA	1 cut(s)	130
PaeR7I	CTCGAG	1 cut(s)	823
PagI	TCATGA	1 cut(s)	861
PciI	ACATGT	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 903
PfeI	GAWTC	4 cut(s)	623, 781, 808, 1133
PfoI	TCCNGGA	1 cut(s)	1124
PkrI	GCNGC	1 cut(s)	193
Ple19I	CGATCG	1 cut(s)	198
PleI	GAGTC	2 cut(s)	482, 873
PpsI	GAGTC	2 cut(s)	482, 873
PpuMI	RGGWCCY	1 cut(s)	84
PscI	ACATGT	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	251, 949
PspGI	CCWGG	2 cut(s)	251, 949
PspN4I	GGNNCC	3 cut(s)	301, 758, 1102
PspPI	GGNCC	2 cut(s)	84, 947
PspPPI	RGGWCCY	1 cut(s)	84
PspXI	VCTCGAGB	1 cut(s)	823
PsuI	RGATCY	4 cut(s)	181, 708, 756, 1087
PvuI	CGATCG	1 cut(s)	198
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	2 cut(s)	119, 311
SalI	GTCGAC	1 cut(s)	896
SaqAI	TTAA	3 cut(s)	714, 936, 1092
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	7 cut(s)	181, 195, 276, 677, 708, 756, 1087
Sau96I	GGNCC	2 cut(s)	84, 947
SchI	GAGTC	2 cut(s)	482, 874
ScrFI	CCNGG	3 cut(s)	253, 951, 1126
SduI	GDGCHC	1 cut(s)	966
SfaNI	GCATC	4 cut(s)	570, 574, 907, 1028
Sfr274I	CTCGAG	1 cut(s)	823
SfuI	TTCGAA	1 cut(s)	130
SinI	GGWCC	2 cut(s)	84, 947
SlaI	CTCGAG	1 cut(s)	823
SmiMI	CAYNNNNRTG	2 cut(s)	119, 311
SmlI	CTYRAG	2 cut(s)	823, 1033
SmoI	CTYRAG	2 cut(s)	823, 1033
Sse9I	AATT	6 cut(s)	235, 403, 442, 519, 651, 719
SsiI	CCGC	1 cut(s)	192
SspI	AATATT	1 cut(s)	932
SspMI	CTAG	3 cut(s)	269, 686, 690
StyD4I	CCNGG	3 cut(s)	251, 949, 1124
TaaI	ACNGT	5 cut(s)	378, 415, 912, 941, 1059
TaiI	ACGT	5 cut(s)	51, 150, 333, 699, 750
TasI	AATT	6 cut(s)	235, 403, 442, 519, 651, 719
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	4 cut(s)	623, 781, 808, 1133
Tru1I	TTAA	3 cut(s)	714, 936, 1092
Tru9I	TTAA	3 cut(s)	714, 936, 1092
TspDTI	ATGAA	6 cut(s)	79, 405, 608, 645, 845, 1035
VpaK11BI	GGWCC	2 cut(s)	84, 947
XapI	RAATTY	3 cut(s)	519, 651, 719
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	897
XspI	CTAG	3 cut(s)	269, 686, 690
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.