Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016593

Physical Location & Seq

Genomic Coordinates Forward (+)

27441981 .. 27443859

Gene Structure 1879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGACTTCTCCTACTGCGACTAAGTATGATGTCTTTCTGAGTTTCAGAGGAGTCGACACTCGTCGCAACTTCATCAGTTTTCTCTACAAAGAATTCGTTCGAAGGAAAATTCGAACTTTCAAAGACGACAAGGAGCTTGAGAATGGCCGGAGGATTTCTCCGGAGCTCAAACGCGCCATCGAGGAGTCGAAATTCGCCGTCGTTGTTGTCTCTGTAAACTACGCTGCGTCTCCTTGGTGTCTCGATGAGCTTGTGAAGATTATGGATTTCGAAAACAAGGGTTCCATCACCGTGATGCCTATCTTCTACGGTGTGGATCCGTGTCATTTGAGGAGGCAGATCGGAGATGTCGCTGAACAGTTTAAGAAGCACGAGGCTAGAGAAGAAGATCATGAGAAAGTTGCTTCGTGGAGACGAGCATTGACCAGTTTGGCTAGTATCTCCGGAGATTGTTCATCCAAATGTGAAGATGAAGCGAAGCTGGTGGACGAAATTGCTGACAAGATATCAAAAAATCTGATGACTGTTACAACAATAAGCAATGGGAAGAACCTAGTTGGGATTGATACACACATGAAGGCTCTTAACAAAAAACTGGATTTGAATTCCAACAAAAGTTTGAGAGTGGTTGGGATTTGGGCAAGAGGATACAATGGTAGATCAGCTTTAGCTAAATATGTTTATCAAGACATCTGTCACCACTTTGACAGCCATTGTTTCTTGGGAAGCGTGAAAAGGATTTCTCAGGGTCGTCACTTATCGCATCTACACGAAGAGTTTCTGATAAGGATTCAAGGAAGTAAACATAATCTCAAGGACCAAAAGGTTTTGCTTGTGGCTGATGATGTTTATAAGCTTGAACAGTTAGATGCTCTTGCTGAGGATTTCAACGGGTTTGGTCCGGGAAGTGTTGTTATCATCACTACACAAGACAAGCATCTGTTTGTTTCTGCTGGTATAAAGCTTGTCTACGAAGTTGAGCTTTTGAAATTCCAGAAAGTTTGTGAACTCTTCCGACAATTCGCCTTTAAAAAGAGAGACATTTCTGCTGCGGTCAAGTTGGTTTACTATAGGGCAACAAATTGGTTAGGTTGTCTAAGTGGTAGATCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

371

Amino Acids

42.3

Weight (kDa)

9.13

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	8 - 188	2.6e-62	TIR domain
TIR_2	PF13676	11 - 108	3e-14	TIR domain
NB-ARC	PF00931	189 - 346	2.3e-10	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17615 AT1G72890 AT1G72890 AT1G72900 AT1G72910 AT1G72920 AT1G72930 AT1G72940 AT1G72950
malus_domestica	MD12G1010100.v1.1
prunus_persica	Prupe.6G109900_v2.0.a1 Prupe.6G110100_v2.0.a1 Prupe.7G012000_v2.0.a1
pyrus_communis	pycom12g00780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
AccI	GTMKAC	2 cut(s)	54, 969
AccII	CGCG	1 cut(s)	174
AccIII	TCCGGA	2 cut(s)	160, 443
AciI	CCGC	1 cut(s)	1052
AclWI	GGATC	2 cut(s)	311, 324
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	5 cut(s)	92, 108, 191, 604, 989
AgsI	TTSAA	6 cut(s)	121, 604, 794, 860, 889, 988
AluBI	AGCT	9 cut(s)	136, 166, 250, 481, 665, 671, 856, 964, 982
AluI	AGCT	9 cut(s)	136, 166, 250, 481, 665, 671, 856, 964, 982
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	5 cut(s)	214, 234, 245, 406, 1032
AlwI	GGATC	2 cut(s)	311, 324
Aor13HI	TCCGGA	2 cut(s)	160, 443
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	224, 1049
ApoI	RAATTY	5 cut(s)	92, 108, 191, 604, 989
Asp700I	GAANNNNTTC	2 cut(s)	96, 777
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	817, 899
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	2 cut(s)	280, 689
AsuII	TTCGAA	3 cut(s)	100, 112, 270
AvaII	GGWCC	2 cut(s)	817, 899
BaeI	ACNNNNGTAYC	2 cut(s)	640, 673
BamHI	GGATCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	879
BbvI	GCAGC	2 cut(s)	211, 1036
BccI	CCATC	2 cut(s)	185, 293
BceAI	ACGGC	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	641
BcnI	CCSGG	1 cut(s)	903
BcoDI	GTCTC	5 cut(s)	214, 234, 245, 406, 1032
BfaI	CTAG	3 cut(s)	378, 435, 554
BfmI	CTRYAG	1 cut(s)	1069
BfuI	GTATCC	1 cut(s)	641
BglII	AGATCT	1 cut(s)	1106
BisI	GCNGC	2 cut(s)	225, 1050
BlsI	GCNGC	2 cut(s)	226, 1051
Bme1390I	CCNGG	1 cut(s)	903
Bme18I	GGWCC	2 cut(s)	817, 899
BmgT120I	GGNCC	2 cut(s)	817, 899
BmiI	GGNNCC	2 cut(s)	283, 318
BmrFI	CCNGG	1 cut(s)	903
BmsI	GCATC	4 cut(s)	285, 772, 859, 946
BoxI	GACNNNNGTC	2 cut(s)	60, 693
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
Bpu10I	CCTNAGC	1 cut(s)	879
Bpu14I	TTCGAA	3 cut(s)	100, 112, 270
BpuEI	CTTGAG	2 cut(s)	158, 797
BpuMI	CCSGG	1 cut(s)	903
BsaBI	GATNNNNATC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	2 cut(s)	160, 443
Bse1I	ACTGG	2 cut(s)	426, 600
Bse3DI	GCAATG	1 cut(s)	547
Bse8I	GATNNNNATC	1 cut(s)	299
BseAI	TCCGGA	2 cut(s)	160, 443
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	455
BseJI	GATNNNNATC	1 cut(s)	299
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	29, 758, 870
BseNI	ACTGG	2 cut(s)	426, 600
BseRI	GAGGAG	3 cut(s)	63, 197, 346
BseXI	GCAGC	2 cut(s)	211, 1036
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	148, 161, 444, 902
BsmAI	GTCTC	5 cut(s)	214, 234, 245, 406, 1032
BsmBI	CGTCTC	2 cut(s)	234, 406
BsnI	GGCC	1 cut(s)	147
Bsp119I	TTCGAA	3 cut(s)	100, 112, 270
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	2 cut(s)	160, 443
Bsp143I	GATC	5 cut(s)	316, 339, 388, 659, 1106
BspACI	CCGC	1 cut(s)	1052
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	3 cut(s)	30, 757, 871
BspEI	TCCGGA	2 cut(s)	160, 443
BspFNI	CGCG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	283, 318
BspPI	GGATC	2 cut(s)	311, 324
BspT104I	TTCGAA	3 cut(s)	100, 112, 270
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	426, 600
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	5 cut(s)	316, 339, 388, 659, 1106
BssSI	CACGAG	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	371
Bst4CI	ACNGT	5 cut(s)	292, 311, 360, 526, 864
Bst6I	CTCTTC	2 cut(s)	768, 1016
BstBI	TTCGAA	3 cut(s)	100, 112, 270
BstDEI	CTNAG	5 cut(s)	21, 38, 744, 879, 1097
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	5 cut(s)	319, 342, 391, 662, 1109
BstMAI	GTCTC	5 cut(s)	214, 234, 245, 406, 1032
BstMBI	GATC	5 cut(s)	316, 339, 388, 659, 1106
BstPAI	GACNNNNGTC	2 cut(s)	60, 693
BstSCI	CCNGG	1 cut(s)	901
BstSFI	CTRYAG	1 cut(s)	1069
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	211, 1036
BstX2I	RGATCY	2 cut(s)	316, 1106
BstYI	RGATCY	2 cut(s)	316, 1106
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	455
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	817, 899
CseI	GACGC	1 cut(s)	216
CviAII	CATG	2 cut(s)	392, 574
DdeI	CTNAG	5 cut(s)	21, 38, 744, 879, 1097
DpnI	GATC	5 cut(s)	318, 341, 390, 661, 1108
DpnII	GATC	5 cut(s)	316, 339, 388, 659, 1106
DraI	TTTAAA	1 cut(s)	1030
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	768, 1016
EarI	CTCTTC	2 cut(s)	768, 1016
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	817, 899
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoRI	GAATTC	2 cut(s)	92, 604
EcoRV	GATATC	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	233
Esp3I	CGTCTC	2 cut(s)	234, 406
FaeI	CATG	2 cut(s)	395, 577
FaiI	YATR	9 cut(s)	27, 263, 393, 575, 678, 807, 852, 959, 1071
FalI	AAGNNNNNCTT	2 cut(s)	966, 998
FatI	CATG	2 cut(s)	391, 573
FblI	GTMKAC	2 cut(s)	54, 969
Fnu4HI	GCNGC	2 cut(s)	225, 1050
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	225, 1050
FspBI	CTAG	3 cut(s)	378, 435, 554
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	225, 1050
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	4 cut(s)	148, 161, 444, 902
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	395, 577
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	2 cut(s)	854, 962
HinfI	GANTC	3 cut(s)	51, 185, 790
HpaII	CCGG	4 cut(s)	148, 161, 444, 902
HphI	GGTGA	2 cut(s)	280, 689
Hpy166II	GTNNAC	7 cut(s)	55, 217, 487, 803, 970, 1007, 1066
Hpy188I	TCNGA	6 cut(s)	39, 47, 344, 519, 783, 1016
Hpy188III	TCNNGA	6 cut(s)	161, 242, 392, 444, 686, 994
Hpy8I	GTNNAC	7 cut(s)	55, 217, 487, 803, 970, 1007, 1066
Hpy99I	CGWCG	2 cut(s)	66, 203
HpyAV	CCTTC	2 cut(s)	96, 571
HpyCH4III	ACNGT	5 cut(s)	292, 311, 360, 526, 864
HpyF3I	CTNAG	5 cut(s)	21, 38, 744, 879, 1097
Hsp92II	CATG	2 cut(s)	395, 577
HspAI	GCGC	1 cut(s)	174
Kpn2I	TCCGGA	2 cut(s)	160, 443
Kzo9I	GATC	5 cut(s)	316, 339, 388, 659, 1106
LmnI	GCTCC	2 cut(s)	133, 163
Lsp1109I	GCAGC	2 cut(s)	211, 1036
LweI	GCATC	4 cut(s)	285, 772, 859, 946
MaeI	CTAG	3 cut(s)	378, 435, 554
MaeIII	GTNAC	3 cut(s)	526, 695, 752
MalI	GATC	5 cut(s)	318, 341, 390, 661, 1108
MboI	GATC	5 cut(s)	316, 339, 388, 659, 1106
MboII	GAAGA	8 cut(s)	268, 295, 395, 398, 479, 559, 785, 1003
MflI	RGATCY	2 cut(s)	316, 1106
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	8 cut(s)	92, 108, 191, 492, 604, 989, 1019, 1081
MlyI	GAGTC	2 cut(s)	60, 194
MmeI	TCCRAC	2 cut(s)	633, 1039
MnlI	CCTC	8 cut(s)	41, 144, 175, 324, 327, 367, 638, 874
MroI	TCCGGA	2 cut(s)	160, 443
MroXI	GAANNNNTTC	2 cut(s)	96, 777
MseI	TTAA	3 cut(s)	363, 585, 1029
MslI	CAYNNNNRTG	3 cut(s)	290, 293, 460
MspI	CCGG	4 cut(s)	148, 161, 444, 902
MspR9I	CCNGG	1 cut(s)	903
MvnI	CGCG	1 cut(s)	174
NciI	CCSGG	1 cut(s)	903
NdeII	GATC	5 cut(s)	316, 339, 388, 659, 1106
NlaIII	CATG	2 cut(s)	395, 577
NlaIV	GGNNCC	2 cut(s)	283, 318
NmuCI	GTSAC	2 cut(s)	695, 752
NspV	TTCGAA	3 cut(s)	100, 112, 270
PagI	TCATGA	1 cut(s)	391
PdmI	GAANNNNTTC	2 cut(s)	96, 777
PfeI	GAWTC	1 cut(s)	790
PfoI	TCCNGGA	1 cut(s)	901
PkrI	GCNGC	2 cut(s)	226, 1051
PleI	GAGTC	2 cut(s)	59, 193
PpsI	GAGTC	2 cut(s)	59, 193
PshAI	GACNNNNGTC	2 cut(s)	60, 693
PsiI	TTATAA	1 cut(s)	852
Psp124BI	GAGCTC	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	283, 318
PspPI	GGNCC	2 cut(s)	817, 899
PsuI	RGATCY	2 cut(s)	316, 1106
RseI	CAYNNNNRTG	3 cut(s)	290, 293, 460
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	363, 585, 1029
SatI	GCNGC	2 cut(s)	225, 1050
Sau3AI	GATC	5 cut(s)	316, 339, 388, 659, 1106
Sau96I	GGNCC	2 cut(s)	817, 899
SchI	GAGTC	2 cut(s)	60, 194
ScrFI	CCNGG	1 cut(s)	903
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	4 cut(s)	285, 772, 859, 946
SfcI	CTRYAG	1 cut(s)	1069
SfuI	TTCGAA	3 cut(s)	100, 112, 270
SinI	GGWCC	2 cut(s)	817, 899
SmiMI	CAYNNNNRTG	3 cut(s)	290, 293, 460
SmlI	CTYRAG	2 cut(s)	137, 812
SmoI	CTYRAG	2 cut(s)	137, 812
Sse9I	AATT	8 cut(s)	92, 108, 191, 492, 604, 989, 1019, 1081
SsiI	CCGC	1 cut(s)	1052
SspMI	CTAG	3 cut(s)	378, 435, 554
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	901
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	5 cut(s)	292, 311, 360, 526, 864
TaqI	TCGA	7 cut(s)	54, 100, 112, 180, 188, 243, 270
TasI	AATT	8 cut(s)	92, 108, 191, 492, 604, 989, 1019, 1081
TfiI	GAWTC	1 cut(s)	790
Tru1I	TTAA	3 cut(s)	363, 585, 1029
Tru9I	TTAA	3 cut(s)	363, 585, 1029
TseFI	GTSAC	2 cut(s)	695, 752
TseI	GCWGC	2 cut(s)	224, 1049
Tsp45I	GTSAC	2 cut(s)	695, 752
TspDTI	ATGAA	4 cut(s)	61, 444, 486, 590
TspGWI	ACGGA	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	817, 899
XapI	RAATTY	5 cut(s)	92, 108, 191, 604, 989
XmiI	GTMKAC	2 cut(s)	54, 969
XmnI	GAANNNNTTC	2 cut(s)	96, 777
XspI	CTAG	3 cut(s)	378, 435, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.