AT1G72920

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016593
Physical Location & Seq
Forward (+)
27437899 .. 27439209
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72920.1

Sequence Viewer

Length: 828 bp
ATGTCTTCTCCTACTGCGACTAAGTACGACGTCTTTCTGAGTTTCAGAGGACTCGACACTCGTCGCAACTTCATCAGTTTTCTCTACAAAGAACTCGTTCGAAGAAAAATTCGAACTTTCAAAGACGACAAGGAGCTCGAGAATGGCCGGAGGATTTCTCCGGAGCTCAAACGCGCCATCGAGGAGTCGAAATTCGCCGTCGTTGTGGTCTCTGTGAACTACGCTGCGTCTCCTTGGTGTCTCGATGAGCTTGTGAAGATTATGGATTTCGAAAACAAGGGTTCCATCACCGTGATGCCTATCTTCTACGGCGTGGATCCTTGTCATTTGAGGAGGCAGATCGGAGATGTCGCTGAACAGTTTAAGAAGCACGAGGCTAGAGAAGAAGATCATGAGAAAGTAGCTTCGTGGAGACGAGCATTGACCAGTTTAGCGAGTATCTCCGGCGAATGTTCATTGAAATGGGAAGATGAAGCGAATCTGGTGGACGAAATTGCTGACAAGATATCAAAAAATCTGATGACTGTTACAACAATAAGCAATGGGAGGGACCTAGTTGGGATTGATACACACATGAAGGCTCTTAACAAAAAATTGGATTTGAATTCCAACAAAAGTTTGAGAGTGGTTGGGATTTGGGCAAGAGGATACAATGGTAGATCAGCTTTAGCTAAATATGTTTATCAAGACATCTGTCATTGGTTGAAGGTTGGTTGGTTGAAGGTTTATCAAGATATCAAGACAGCTTCCAAACTTTATGTTTTAACTCGTTGGTTGAAGGTTGCACATTTGCTTCATAGATCACATCACTCTTTTAAAACTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

275

Amino Acids

31.8

Weight (kDa)

9.4

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 8 - 188 2.4e-62 TIR domain
TIR_2 PF13676 11 - 108 3.9e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AccII CGCG 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 160
AclWI GGATC 2 cut(s) 311, 324
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 3 cut(s) 108, 191, 604
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 6 cut(s) 121, 460, 604, 706, 721, 778
AluBI AGCT 7 cut(s) 136, 166, 250, 404, 665, 671, 746
AluI AGCT 7 cut(s) 136, 166, 250, 404, 665, 671, 746
Alw21I GWGCWC 2 cut(s) 138, 168
Alw26I GTCTC 4 cut(s) 214, 234, 245, 406
AlwI GGATC 2 cut(s) 311, 324
Ama87I CYCGRG 1 cut(s) 137
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 3 cut(s) 108, 191, 604
Asp700I GAANNNNTTC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 550
AsuHPI GGTGA 1 cut(s) 280
AsuII TTCGAA 3 cut(s) 100, 112, 270
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 550
BaeI ACNNNNGTAYC 2 cut(s) 640, 673
BamHI GGATCC 1 cut(s) 316
BanII GRGCYC 2 cut(s) 138, 168
BauI CACGAG 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 138, 168
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 185, 293
BceAI ACGGC 2 cut(s) 182, 325
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 4 cut(s) 214, 234, 245, 406
BfaI CTAG 2 cut(s) 378, 554
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 3 cut(s) 283, 318, 551
BmsI GCATC 1 cut(s) 285
BoxI GACNNNNGTC 2 cut(s) 60, 693
BplI GAGNNNNNCTC 2 cut(s) 142, 174
Bpu14I TTCGAA 3 cut(s) 100, 112, 270
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 299
BseAI TCCGGA 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 233
BseJI GATNNNNATC 1 cut(s) 299
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 2 cut(s) 29, 813
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 197, 346
BseXI GCAGC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 138, 168
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 3 cut(s) 148, 161, 444
BslFI GGGAC 1 cut(s) 563
BsmAI GTCTC 4 cut(s) 214, 234, 245, 406
BsmBI CGTCTC 2 cut(s) 234, 406
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 137
Bsp119I TTCGAA 3 cut(s) 100, 112, 270
Bsp1286I GDGCHC 2 cut(s) 138, 168
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 5 cut(s) 316, 339, 388, 659, 800
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 30, 814
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 283, 318, 551
BspPI GGATC 2 cut(s) 311, 324
BspT104I TTCGAA 3 cut(s) 100, 112, 270
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 5 cut(s) 316, 339, 388, 659, 800
BssNI GRCGYC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 292, 360, 526
BstACI GRCGYC 1 cut(s) 30
BstBI TTCGAA 3 cut(s) 100, 112, 270
BstDEI CTNAG 3 cut(s) 21, 38, 822
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 5 cut(s) 319, 342, 391, 662, 803
BstMAI GTCTC 4 cut(s) 214, 234, 245, 406
BstMBI GATC 5 cut(s) 316, 339, 388, 659, 800
BstPAI GACNNNNGTC 2 cut(s) 60, 693
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 1 cut(s) 147
CciI TCATGA 1 cut(s) 391
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 550
CseI GACGC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 392, 574
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 21, 38, 822
DpnI GATC 5 cut(s) 318, 341, 390, 661, 802
DpnII GATC 5 cut(s) 316, 339, 388, 659, 800
DraI TTTAAA 1 cut(s) 817
EaeI YGGCCR 1 cut(s) 145
Ecl136II GAGCTC 2 cut(s) 136, 166
Eco130I CCWWGG 1 cut(s) 233
Eco24I GRGCYC 2 cut(s) 138, 168
Eco31I GGTCTC 1 cut(s) 214
Eco32I GATATC 2 cut(s) 507, 736
Eco47I GGWCC 1 cut(s) 550
Eco53kI GAGCTC 2 cut(s) 136, 166
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 2 cut(s) 136, 166
EcoO109I RGGNCCY 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 604
EcoRV GATATC 2 cut(s) 507, 736
EcoT14I CCWWGG 1 cut(s) 233
EcoT38I GRGCYC 2 cut(s) 138, 168
ErhI CCWWGG 1 cut(s) 233
Esp3I CGTCTC 2 cut(s) 234, 406
FaeI CATG 2 cut(s) 395, 577
FaiI YATR 6 cut(s) 263, 393, 575, 678, 759, 798
FaqI GGGAC 1 cut(s) 563
FatI CATG 2 cut(s) 391, 573
Fnu4HI GCNGC 1 cut(s) 225
FriOI GRGCYC 2 cut(s) 138, 168
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 2 cut(s) 378, 554
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 147
HapII CCGG 3 cut(s) 148, 161, 444
HgaI GACGC 1 cut(s) 216
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 395, 577
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HinfI GANTC 3 cut(s) 51, 185, 478
HpaII CCGG 3 cut(s) 148, 161, 444
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 217, 487
Hpy188I TCNGA 4 cut(s) 39, 47, 344, 519
Hpy188III TCNNGA 7 cut(s) 139, 161, 242, 392, 686, 731, 739
Hpy8I GTNNAC 2 cut(s) 217, 487
Hpy99I CGWCG 3 cut(s) 32, 66, 203
HpyAV CCTTC 4 cut(s) 571, 700, 715, 772
HpyCH4III ACNGT 3 cut(s) 292, 360, 526
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 785
HpyF3I CTNAG 3 cut(s) 21, 38, 822
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 395, 577
HspAI GCGC 1 cut(s) 174
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 316, 339, 388, 659, 800
LmnI GCTCC 2 cut(s) 133, 163
LpnPI CCDG 5 cut(s) 161, 174, 439, 457, 467
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 285
MaeI CTAG 2 cut(s) 378, 554
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 526
MalI GATC 5 cut(s) 318, 341, 390, 661, 802
MboI GATC 5 cut(s) 316, 339, 388, 659, 800
MboII GAAGA 6 cut(s) 114, 268, 295, 395, 398, 479
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 2 cut(s) 138, 168
MluCI AATT 5 cut(s) 108, 191, 492, 593, 604
MlyI GAGTC 2 cut(s) 45, 194
MmeI TCCRAC 1 cut(s) 633
MnlI CCTC 8 cut(s) 41, 144, 175, 324, 327, 367, 540, 638
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 4 cut(s) 363, 585, 764, 816
MslI CAYNNNNRTG 3 cut(s) 290, 293, 460
MspI CCGG 3 cut(s) 148, 161, 444
MvnI CGCG 1 cut(s) 174
NdeII GATC 5 cut(s) 316, 339, 388, 659, 800
NlaIII CATG 2 cut(s) 395, 577
NlaIV GGNNCC 3 cut(s) 283, 318, 551
NspV TTCGAA 3 cut(s) 100, 112, 270
PaeR7I CTCGAG 1 cut(s) 137
PagI TCATGA 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 2 cut(s) 45, 193
PpsI GAGTC 2 cut(s) 45, 193
PpuMI RGGWCCY 1 cut(s) 550
PshAI GACNNNNGTC 2 cut(s) 60, 693
Psp124BI GAGCTC 2 cut(s) 138, 168
Psp5II RGGWCCY 1 cut(s) 550
PspN4I GGNNCC 3 cut(s) 283, 318, 551
PspPI GGNCC 1 cut(s) 550
PspPPI RGGWCCY 1 cut(s) 550
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 3 cut(s) 290, 293, 460
SacI GAGCTC 2 cut(s) 138, 168
SaqAI TTAA 4 cut(s) 363, 585, 764, 816
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 5 cut(s) 316, 339, 388, 659, 800
Sau96I GGNCC 1 cut(s) 550
SchI GAGTC 2 cut(s) 45, 194
SduI GDGCHC 2 cut(s) 138, 168
SfaNI GCATC 1 cut(s) 285
Sfr274I CTCGAG 1 cut(s) 137
SfuI TTCGAA 3 cut(s) 100, 112, 270
SinI GGWCC 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 3 cut(s) 290, 293, 460
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 5 cut(s) 108, 191, 492, 593, 604
SspMI CTAG 2 cut(s) 378, 554
SstI GAGCTC 2 cut(s) 138, 168
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 3 cut(s) 292, 360, 526
TaiI ACGT 1 cut(s) 33
TaqI TCGA 8 cut(s) 54, 100, 112, 138, 180, 188, 243, 270
TasI AATT 5 cut(s) 108, 191, 492, 593, 604
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 4 cut(s) 363, 585, 764, 816
Tru9I TTAA 4 cut(s) 363, 585, 764, 816
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 5 cut(s) 61, 444, 486, 590, 785
VpaK11BI GGWCC 1 cut(s) 550
XapI RAATTY 3 cut(s) 108, 191, 604
XhoI CTCGAG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 2 cut(s) 378, 554
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.