Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016593

Physical Location & Seq

Genomic Coordinates Forward (+)

27429916 .. 27432003

Gene Structure 2088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAACACGATCTTTAAAAAATTATCCTGTTTTAAGAAAAAGGTTAAATCTTTACGAATATTCGAATCCAGGTCACTCTCTTCTTCGTCTTCTTCCTCATTCACTCCTCAAAAGTTCGACGTTTTTCTAAGCTTCAGAGGCAAAGATACTCGCAAGAACTTCGTCAGTTTTCTCTACAAGGCGCTAGTATCAAAAGGGATTCGAACTTTCAAAGACGACGAGGAATTGGAGAGAGGCCGTCCGATTCCGCCGGAGCTTCGCCAAGCAATCAAAGGGTCGAGAATCGCCGTGGTCGTGGTCTCTGTAACTTACCCTGCCTCGTCCTGGTGTCTCGAAGAACTCAGGGAGATTCTGAAACTTGAGAAGCTGGGTTTGCTCACTGTAATACCCATTTTCTATGAGATTAATCCTTCAGACGTGAGGAGACAGAGCGGAGTAGTCTCAAAACAGTTCAAGAAGCATGAGAAGAGACAGAGCAGAGAAAGAGTCAAATCGTGGAGGGAAGCGTTGACCAAATTGGCTAGTCTCTCCGGCGAGTGTTCAAAGAATTGGGAAGATGACTCGAAGCTGGTCGATGGAATTACTGAGAAGATATCAACAAAGTTGTTCTCGGAAAAACCAAGGAATGATAATATCCTAATTGGTATCGACCAACACATGGGGGAATTGTATCCACTATTTAACCTGAATTCGAATGAAGATGTTCAAGTCATTGGGATTTGGGGAAGAGGAAGTAATGGTAGATCAGCACTAGCAAGCCACGTTTACCAAAACATCAAACATCACTTTGAAGCTCATTGTTTTCTCGAAGACGTGAGACGGATTTCGCTACATTTCCGTGACTCTCATTTACAAGATGAGCTTCTTTCAAATATGCAAGGAGAAGGTTTGACAACAAAGAACTGTCATAGGTGTCTTAAGACTATCAAAGCAAGGCTAAGGAACAAGAAGGTTCTTCTTGTGGCGAACGATGTAGACAAACTTGAACAATTTGATGCACTTGCTGAAGAATTTAGCTGGTTTGGTCCTGGAAGCAGAATCATCATAACCACACAAGATAGACAATTGCTTATTTCATCAGTAGTGAGGAGTGTCTACGAAGTTAAGCTCTTGAGATGTTACGCAGTTCGTGAGCTCTTTAGGTCAAATGCCTTCAAAGAAAGAGAAAGAGACGATCCTGTTGGGTTCGACCAGTCTACATATCGAGCCATGTATATATCAGGTCATGTGTTTTTGACCTTGAGATATATTTTCACTTTGTTGTGTGATAGAGGTCAACTTAGAGAAAGGATAAATGCAATAGTACATAGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

438

Amino Acids

50.62

Weight (kDa)

9.59

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	38 - 188	9.2e-53	TIR domain
TIR_2	PF13676	41 - 153	1.9e-16	TIR domain
NB-ARC	PF00931	255 - 414	3.5e-14	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17615 AT1G72890 AT1G72890 AT1G72900 AT1G72910 AT1G72920 AT1G72930 AT1G72940 AT1G72950
malus_domestica	MD12G1010100.v1.1
prunus_persica	Prupe.6G109900_v2.0.a1 Prupe.6G110100_v2.0.a1 Prupe.7G012000_v2.0.a1
pyrus_communis	pycom12g00780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccBSI	CCGCTC	1 cut(s)	432
AccI	GTMKAC	3 cut(s)	975, 1095, 1196
AciI	CCGC	2 cut(s)	248, 432
AclWI	GGATC	1 cut(s)	1169
AcsI	RAATTY	2 cut(s)	688, 1010
AcuI	CTGAAG	3 cut(s)	118, 396, 1026
AfaI	GTAC	1 cut(s)	1305
AfiI	CCNNNNNNNGG	2 cut(s)	324, 658
AflII	CTTAAG	1 cut(s)	917
AgsI	TTSAA	8 cut(s)	211, 454, 543, 707, 791, 870, 986, 1156
AjiI	CACGTC	2 cut(s)	418, 814
AjnI	CCWGG	3 cut(s)	68, 323, 1027
AluBI	AGCT	9 cut(s)	132, 256, 367, 568, 794, 862, 1017, 1108, 1135
AluI	AGCT	9 cut(s)	132, 256, 367, 568, 794, 862, 1017, 1108, 1135
Alw21I	GWGCWC	1 cut(s)	1137
Alw26I	GTCTC	8 cut(s)	304, 335, 418, 445, 463, 530, 811, 1164
AlwI	GGATC	1 cut(s)	1169
AoxI	GGCC	1 cut(s)	235
ApoI	RAATTY	2 cut(s)	688, 1010
AseI	ATTAAT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	1025
AsuII	TTCGAA	3 cut(s)	63, 202, 692
AvaII	GGWCC	1 cut(s)	1025
BanII	GRGCYC	1 cut(s)	1137
BbsI	GAAGAC	2 cut(s)	81, 816
Bbv12I	GWGCWC	1 cut(s)	1137
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	2 cut(s)	222, 272
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	3 cut(s)	70, 325, 1029
BciVI	GTATCC	1 cut(s)	681
BcoDI	GTCTC	8 cut(s)	304, 335, 418, 445, 463, 530, 811, 1164
BfaI	CTAG	3 cut(s)	185, 522, 752
BfoI	RGCGCY	1 cut(s)	185
BfrI	CTTAAG	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	681
Bme1390I	CCNGG	3 cut(s)	70, 325, 1029
Bme18I	GGWCC	1 cut(s)	1025
BmgBI	CACGTC	2 cut(s)	418, 814
BmgT120I	GGNCC	1 cut(s)	1025
BmrFI	CCNGG	3 cut(s)	70, 325, 1029
BmsI	GCATC	1 cut(s)	985
BpiI	GAAGAC	2 cut(s)	81, 816
Bpu10I	CCTNAGC	1 cut(s)	938
Bpu14I	TTCGAA	3 cut(s)	63, 202, 692
BpuEI	CTTGAG	3 cut(s)	380, 1132, 1261
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	288, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 658
Bse1I	ACTGG	1 cut(s)	1192
BseBI	CCWGG	3 cut(s)	70, 325, 1029
BseDI	CCNNGG	2 cut(s)	288, 620
BseLI	CCNNNNNNNGG	2 cut(s)	324, 658
BseMII	CTCAG	2 cut(s)	355, 576
BseNI	ACTGG	1 cut(s)	1192
BseRI	GAGGAG	3 cut(s)	96, 436, 1102
BseYI	CCCAGC	1 cut(s)	367
BshFI	GGCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	1137
BsiSI	CCGG	2 cut(s)	251, 531
BslI	CCNNNNNNNGG	2 cut(s)	324, 658
BsmAI	GTCTC	8 cut(s)	304, 335, 418, 445, 463, 530, 811, 1164
BsmBI	CGTCTC	2 cut(s)	811, 1164
BsnI	GGCC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	304
Bsp119I	TTCGAA	3 cut(s)	63, 202, 692
Bsp1286I	GDGCHC	1 cut(s)	1137
Bsp143I	GATC	3 cut(s)	9, 743, 1174
BspACI	CCGC	2 cut(s)	248, 432
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	354, 577
BspPI	GGATC	1 cut(s)	1169
BspT104I	TTCGAA	3 cut(s)	63, 202, 692
BspTI	CTTAAG	1 cut(s)	917
BspTNI	GGTCTC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	1192
BssECI	CCNNGG	2 cut(s)	288, 620
BssMI	GATC	3 cut(s)	9, 743, 1174
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	3 cut(s)	70, 325, 1029
Bst4CI	ACNGT	3 cut(s)	382, 450, 905
Bst6I	CTCTTC	3 cut(s)	85, 461, 721
BstAFI	CTTAAG	1 cut(s)	917
BstBI	TTCGAA	3 cut(s)	63, 202, 692
BstC8I	GCNNGC	1 cut(s)	757
BstDEI	CTNAG	5 cut(s)	128, 341, 585, 938, 1280
BstDSI	CCRYGG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	12, 746, 1177
BstMAI	GTCTC	8 cut(s)	304, 335, 418, 445, 463, 530, 811, 1164
BstMBI	GATC	3 cut(s)	9, 743, 1174
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 373
BstNI	CCWGG	3 cut(s)	70, 325, 1029
BstSCI	CCNGG	3 cut(s)	68, 323, 1027
BstV2I	GAAGAC	2 cut(s)	81, 816
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	288
BtrI	CACGTC	2 cut(s)	418, 814
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	757
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	1025
Csp6I	GTAC	1 cut(s)	1304
CviAII	CATG	4 cut(s)	461, 658, 1210, 1226
CviQI	GTAC	1 cut(s)	1304
DdeI	CTNAG	5 cut(s)	128, 341, 585, 938, 1280
DpnI	GATC	3 cut(s)	11, 745, 1176
DpnII	GATC	3 cut(s)	9, 743, 1174
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	3 cut(s)	85, 461, 721
EarI	CTCTTC	3 cut(s)	85, 461, 721
EciI	GGCGGA	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	1135
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	1137
Eco31I	GGTCTC	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	1025
Eco53kI	GAGCTC	1 cut(s)	1135
Eco57I	CTGAAG	3 cut(s)	118, 396, 1026
EcoICRI	GAGCTC	1 cut(s)	1135
EcoRI	GAATTC	1 cut(s)	688
EcoRII	CCWGG	3 cut(s)	68, 323, 1027
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	1137
ErhI	CCWWGG	1 cut(s)	620
Esp3I	CGTCTC	2 cut(s)	811, 1164
FaeI	CATG	4 cut(s)	464, 661, 1213, 1229
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FatI	CATG	4 cut(s)	460, 657, 1209, 1225
FblI	GTMKAC	3 cut(s)	975, 1095, 1196
FriOI	GRGCYC	1 cut(s)	1137
FspBI	CTAG	3 cut(s)	185, 522, 752
GlaI	GCGC	1 cut(s)	183
GsaI	CCCAGC	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	251, 531
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	464, 661, 1213, 1229
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	2 cut(s)	510, 1277
HindII	GTYRAC	2 cut(s)	510, 1277
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	9 cut(s)	65, 199, 244, 282, 349, 486, 560, 842, 1038
HpaII	CCGG	2 cut(s)	251, 531
Hpy166II	GTNNAC	6 cut(s)	510, 766, 976, 1096, 1197, 1277
Hpy188I	TCNGA	5 cut(s)	137, 243, 354, 415, 613
Hpy188III	TCNNGA	6 cut(s)	279, 332, 454, 806, 1111, 1130
Hpy8I	GTNNAC	6 cut(s)	510, 766, 976, 1096, 1197, 1277
Hpy99I	CGWCG	2 cut(s)	122, 221
HpyAV	CCTTC	4 cut(s)	420, 878, 943, 1162
HpyCH4III	ACNGT	3 cut(s)	382, 450, 905
HpyCH4IV	ACGT	4 cut(s)	120, 417, 762, 813
HpyCH4V	TGCA	3 cut(s)	877, 998, 1298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 373
HpyF3I	CTNAG	5 cut(s)	128, 341, 585, 938, 1280
HpySE526I	ACGT	4 cut(s)	120, 417, 762, 813
Hsp92II	CATG	4 cut(s)	464, 661, 1213, 1229
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	9, 743, 1174
LmnI	GCTCC	1 cut(s)	253
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	3 cut(s)	185, 522, 752
MaeII	ACGT	4 cut(s)	120, 417, 762, 813
MaeIII	GTNAC	4 cut(s)	72, 304, 839, 1118
MalI	GATC	3 cut(s)	11, 745, 1176
MbiI	CCGCTC	1 cut(s)	432
MboI	GATC	3 cut(s)	9, 743, 1174
MfeI	CAATTG	1 cut(s)	1064
MhlI	GDGCHC	1 cut(s)	1137
MlyI	GAGTC	3 cut(s)	495, 554, 836
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	7 cut(s)	15, 33, 45, 405, 681, 918, 1104
MslI	CAYNNNNRTG	1 cut(s)	837
MspCI	CTTAAG	1 cut(s)	917
MspI	CCGG	2 cut(s)	251, 531
MspR9I	CCNGG	3 cut(s)	70, 325, 1029
MunI	CAATTG	1 cut(s)	1064
MvaI	CCWGG	3 cut(s)	70, 325, 1029
MwoI	GCNNNNNNNGC	2 cut(s)	138, 373
NdeII	GATC	3 cut(s)	9, 743, 1174
NlaIII	CATG	4 cut(s)	464, 661, 1213, 1229
NmuCI	GTSAC	2 cut(s)	72, 839
NspV	TTCGAA	3 cut(s)	63, 202, 692
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	6 cut(s)	65, 199, 244, 282, 349, 1038
PflMI	CCANNNNNTGG	1 cut(s)	658
PfoI	TCCNGGA	1 cut(s)	1027
PleI	GAGTC	3 cut(s)	494, 554, 836
PpsI	GAGTC	3 cut(s)	494, 554, 836
PshBI	ATTAAT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	1137
Psp6I	CCWGG	3 cut(s)	68, 323, 1027
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	3 cut(s)	68, 323, 1027
PspPI	GGNCC	1 cut(s)	1025
RsaI	GTAC	1 cut(s)	1305
RsaNI	GTAC	1 cut(s)	1304
RseI	CAYNNNNRTG	1 cut(s)	837
SacI	GAGCTC	1 cut(s)	1137
SaqAI	TTAA	7 cut(s)	15, 33, 45, 405, 681, 918, 1104
Sau3AI	GATC	3 cut(s)	9, 743, 1174
Sau96I	GGNCC	1 cut(s)	1025
SchI	GAGTC	3 cut(s)	495, 554, 836
ScrFI	CCNGG	3 cut(s)	70, 325, 1029
SduI	GDGCHC	1 cut(s)	1137
SfaNI	GCATC	1 cut(s)	985
SfuI	TTCGAA	3 cut(s)	63, 202, 692
SinI	GGWCC	1 cut(s)	1025
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	4 cut(s)	359, 917, 1111, 1240
SmoI	CTYRAG	4 cut(s)	359, 917, 1111, 1240
SsiI	CCGC	2 cut(s)	248, 432
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	3 cut(s)	185, 522, 752
SstI	GAGCTC	1 cut(s)	1137
StyD4I	CCNGG	3 cut(s)	68, 323, 1027
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	382, 450, 905
TaiI	ACGT	4 cut(s)	123, 420, 765, 816
TatI	WGTACW	1 cut(s)	1303
TfiI	GAWTC	6 cut(s)	65, 199, 244, 282, 349, 1038
Tru1I	TTAA	7 cut(s)	15, 33, 45, 405, 681, 918, 1104
Tru9I	TTAA	7 cut(s)	15, 33, 45, 405, 681, 918, 1104
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	2 cut(s)	72, 839
Tsp45I	GTSAC	2 cut(s)	72, 839
TspDTI	ATGAA	3 cut(s)	17, 711, 1065
TspGWI	ACGGA	2 cut(s)	827, 835
TspRI	CASTG	1 cut(s)	385
Van91I	CCANNNNNTGG	1 cut(s)	658
Vha464I	CTTAAG	1 cut(s)	917
VpaK11BI	GGWCC	1 cut(s)	1025
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	2 cut(s)	688, 1010
XmiI	GTMKAC	3 cut(s)	975, 1095, 1196
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	3 cut(s)	185, 522, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.