Prupe.6G109900_v2.0.a1

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016593
Physical Location & Seq
Reverse (-)
7866113 .. 7867027
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G109900.1

Sequence Viewer

Length: 915 bp
ATGGATTCTCCTCCTAAAGTCAAGGTCTGTGTTGGGTGCAAGCAGAATATTAAGGATAGGAAATATTATAGAAATGGGAAGGGTACTCATCAGTGGCATCCACATTGTTTTCGTTGTCATGCTTGCAGTCTTCCAATTACTGAATTTTTGATGCATGAGAATCATCCTTACCACAGACTCTGCCACAGGGAGCGGCATTTACGATGTGGTGTTTGTGAAAATTTAATCCCATTAAATTCAGATGGTACTGTGTTGTATAGCCTACATCCTATCTCGCTACAAAGATCCTGTCCCAAACATGAGGACGACGGAACTCCTAGATGTTGTGGTTGTGCAAGAATAAAGCCTAGGAACACCATATATTATTTACTTAATGATGGTCGGCATCAATGTCTGGAGTGCCGGGACACGGCCATTACGGAAGCTGACCAATGCGAAGCCCTTTTCCTTGAAATACAAAAAGAGTTTGATTTGAAATTTCAAGAGAAAAAATTTCTAATACACTTCGTCGAGAAAACAGAATTCTTAAAAGTGAGTGAACATATTTTATTGAGCGGGAAGCCCCCTGAAGTAACAGCAATTAAGATACTGAGTGGTCTTCCTAGGCTGAGGACAGGGCTCACTATGGTTCGGACTATGATGGGAGCATGGCTAGAGGTTAAATGTTGTCGAATTCGAAATATGAGCCCACAGGTTAAAATTGATATGAGCCAAGTGTTGGCCCATATGTGGCTGGAATTTGTGATGAATTCTGGGTCAGACTTTGAGAAGAAGCTTGGTAACTTTTATCAACGCCGAATTGAGTCAGATAGTGGGGAAGGGTTCAGGTTGGGTAGAAAAGCAGTACTCAAGCATGGTCTAAGACAGACCCTTGACCATATTGCGATGACAGGAAGCCTTCCACTTGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM NB-ARC TIR

Protein Analysis

305

Amino Acids

35.13

Weight (kDa)

8.92

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 718
AccBSI CCGCTC 2 cut(s) 193, 555
AciI CCGC 2 cut(s) 193, 555
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 9 cut(s) 143, 220, 235, 476, 491, 521, 672, 737, 748
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 3 cut(s) 85, 247, 846
AfiI CCNNNNNNNGG 3 cut(s) 409, 718, 729
AgsI TTSAA 3 cut(s) 452, 475, 482
AluBI AGCT 2 cut(s) 425, 775
AluI AGCT 2 cut(s) 425, 775
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 180
AoxI GGCC 2 cut(s) 411, 720
ApoI RAATTY 9 cut(s) 143, 220, 235, 476, 491, 521, 672, 737, 748
ArsI GACNNNNNNTTYG 2 cut(s) 274, 306
AspA2I CCTAGG 2 cut(s) 347, 602
AspS9I GGNCC 1 cut(s) 721
AsuC2I CCSGG 1 cut(s) 404
AsuII TTCGAA 1 cut(s) 676
AvrII CCTAGG 2 cut(s) 347, 602
BanII GRGCYC 2 cut(s) 621, 689
BbsI GAAGAC 2 cut(s) 122, 590
BbvCI CCTCAGC 1 cut(s) 608
BccI CCATC 3 cut(s) 236, 371, 634
BceAI ACGGC 1 cut(s) 426
BcnI CCSGG 1 cut(s) 404
BfaI CTAG 4 cut(s) 318, 348, 603, 653
BisI GCNGC 1 cut(s) 194
BlnI CCTAGG 2 cut(s) 347, 602
BlsI GCNGC 1 cut(s) 195
BmcAI AGTACT 1 cut(s) 846
Bme1390I CCNGG 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 721
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 3 cut(s) 106, 141, 394
BpiI GAAGAC 2 cut(s) 122, 590
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 676
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 347, 602
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 718, 729
BseDI CCNNGG 2 cut(s) 347, 602
BseGI GGATG 3 cut(s) 97, 163, 265
BseLI CCNNNNNNNGG 3 cut(s) 409, 718, 729
BseMII CTCAG 2 cut(s) 581, 599
BshFI GGCC 2 cut(s) 413, 722
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 2 cut(s) 276, 419
BslI CCNNNNNNNGG 3 cut(s) 409, 718, 729
BsmFI GGGAC 2 cut(s) 276, 419
BsnI GGCC 2 cut(s) 413, 722
Bsp119I TTCGAA 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 621, 689
Bsp143I GATC 1 cut(s) 284
BspACI CCGC 2 cut(s) 193, 555
BspANI GGCC 2 cut(s) 413, 722
BspCNI CTCAG 2 cut(s) 582, 600
BspPI GGATC 1 cut(s) 279
BspT104I TTCGAA 1 cut(s) 676
BsrBI CCGCTC 2 cut(s) 193, 555
BssECI CCNNGG 2 cut(s) 347, 602
BssMI GATC 1 cut(s) 284
BssT1I CCWWGG 2 cut(s) 347, 602
Bst4CI ACNGT 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 41, 124
BstDEI CTNAG 3 cut(s) 590, 608, 860
BstF5I GGATG 3 cut(s) 97, 163, 265
BstKTI GATC 1 cut(s) 287
BstMBI GATC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 402
BstV2I GAAGAC 2 cut(s) 122, 590
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 2 cut(s) 413, 722
BtgZI GCGATG 1 cut(s) 899
BtsCI GGATG 3 cut(s) 97, 163, 265
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 2 cut(s) 41, 124
CaiI CAGNNNCTG 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 721
Csp6I GTAC 3 cut(s) 84, 246, 845
CviAII CATG 5 cut(s) 119, 155, 299, 648, 854
CviQI GTAC 3 cut(s) 84, 246, 845
DdeI CTNAG 3 cut(s) 590, 608, 860
DpnI GATC 1 cut(s) 286
DpnII GATC 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 411
Eco130I CCWWGG 2 cut(s) 347, 602
Eco24I GRGCYC 2 cut(s) 621, 689
Eco57I CTGAAG 1 cut(s) 588
EcoRI GAATTC 3 cut(s) 521, 672, 748
EcoT14I CCWWGG 2 cut(s) 347, 602
EcoT22I ATGCAT 1 cut(s) 156
EcoT38I GRGCYC 2 cut(s) 621, 689
ErhI CCWWGG 2 cut(s) 347, 602
FaeI CATG 5 cut(s) 122, 158, 302, 651, 857
FaqI GGGAC 2 cut(s) 276, 419
FatI CATG 5 cut(s) 118, 154, 298, 647, 853
FauI CCCGC 1 cut(s) 548
FauNDI CATATG 1 cut(s) 726
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 3 cut(s) 84, 150, 252
FriOI GRGCYC 2 cut(s) 621, 689
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 4 cut(s) 318, 348, 603, 653
GluI GCNGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 2 cut(s) 413, 722
HapII CCGG 1 cut(s) 403
Hin1II CATG 5 cut(s) 122, 158, 302, 651, 857
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 4 cut(s) 5, 160, 177, 803
HpaII CCGG 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 4 cut(s) 241, 633, 760, 808
Hpy188III TCNNGA 3 cut(s) 395, 482, 511
Hpy8I GTNNAC 1 cut(s) 539
Hpy99I CGWCG 2 cut(s) 311, 512
HpyAV CCTTC 3 cut(s) 73, 812, 908
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 39, 126, 154, 335
HpyF3I CTNAG 3 cut(s) 590, 608, 860
Hsp92II CATG 5 cut(s) 122, 158, 302, 651, 857
Kzo9I GATC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 190, 644
LweI GCATC 3 cut(s) 106, 141, 394
MaeI CTAG 4 cut(s) 318, 348, 603, 653
MaeIII GTNAC 2 cut(s) 571, 779
MalI GATC 1 cut(s) 286
MbiI CCGCTC 2 cut(s) 193, 555
MboI GATC 1 cut(s) 284
MboII GAAGA 3 cut(s) 122, 590, 781
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 2 cut(s) 621, 689
MlyI GAGTC 2 cut(s) 171, 812
MnlI CCTC 4 cut(s) 21, 295, 603, 649
Mph1103I ATGCAT 1 cut(s) 156
MseI TTAA 8 cut(s) 51, 224, 233, 372, 527, 582, 660, 696
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 1 cut(s) 404
NciI CCSGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 726
NdeII GATC 1 cut(s) 284
NlaIII CATG 5 cut(s) 122, 158, 302, 651, 857
NsiI ATGCAT 1 cut(s) 156
NspV TTCGAA 1 cut(s) 676
PfeI GAWTC 2 cut(s) 5, 160
PflMI CCANNNNNTGG 1 cut(s) 718
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 2 cut(s) 171, 811
PpsI GAGTC 2 cut(s) 171, 811
PspPI GGNCC 1 cut(s) 721
PstNI CAGNNNCTG 1 cut(s) 180
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 3 cut(s) 85, 247, 846
RsaNI GTAC 3 cut(s) 84, 246, 845
SaqAI TTAA 8 cut(s) 51, 224, 233, 372, 527, 582, 660, 696
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 284
Sau96I GGNCC 1 cut(s) 721
ScaI AGTACT 1 cut(s) 846
SchI GAGTC 2 cut(s) 171, 812
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 2 cut(s) 621, 689
SetI ASST 6 cut(s) 27, 427, 660, 696, 777, 830
SfaNI GCATC 3 cut(s) 106, 141, 394
SfuI TTCGAA 1 cut(s) 676
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
SsiI CCGC 2 cut(s) 193, 555
SspI AATATT 2 cut(s) 49, 65
SspMI CTAG 4 cut(s) 318, 348, 603, 653
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 2 cut(s) 347, 602
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 510, 670, 676
TatI WGTACW 1 cut(s) 844
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 2 cut(s) 5, 160
Tru1I TTAA 8 cut(s) 51, 224, 233, 372, 527, 582, 660, 696
Tru9I TTAA 8 cut(s) 51, 224, 233, 372, 527, 582, 660, 696
TscAI CASTG 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 761
TspGWI ACGGA 2 cut(s) 324, 434
TspRI CASTG 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 718
XapI RAATTY 9 cut(s) 143, 220, 235, 476, 491, 521, 672, 737, 748
XmaJI CCTAGG 2 cut(s) 347, 602
XspI CTAG 4 cut(s) 318, 348, 603, 653
ZrmI AGTACT 1 cut(s) 846
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.