AT1G72950

GTP-binding protein that may be involved in cell development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016593
Physical Location & Seq
Forward (+)
27444415 .. 27445997
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72950.1

Sequence Viewer

Length: 1140 bp
ATGTCAGATTCTTCAAACACCCTCCCAAAGTTTGATGTTTTTCTGAGCTTCAGAGGACTCGACACTCGCCGCAGCTTCATCAGTTTCCTCTACAAAGAACTGATTCGAAGAAACATTCGAACCTTTAAAGACGATAAGGAGTTGAAGAATGGCCGGAGGATTACGCCGGAGCTAATACGCGCCATTGAAGGGTCGAGATTCGCAGTCGTTGTGGTCTCCGTGAATTACGCTGCGTCTCGTTGGTGTCTCGAAGAGCTCGTGAAGATTATGGATTTCGAAAACATGGGCTCGCTCAAGGTCATGCCTATCTTCTACGGCGTGGATCCGTGTCATGTGAGGAGACAGATCGGAGAAGTCGCTGAACAGTTTAAGAAGCATGAGGGTAGAGAAGATCATGAGAAAGTGCTTTCATGGAGGCAAGCGTTGACTAATTTGGCGAGTATCTCCGGCGATTGTTCATGGAAATGGGAAGATGACTCGAAGATGGTCGAAGAAATTACTGACAGGATATCAAAAGAGCTGATGATTGATACAACAAGAAGCAATGGGAGTGACCTTGAAGGGATTGATGCACACATGAAAGCTCTTCACCGTTTATTGAATTTAAATTCTAAGAAAAGTGTGAGAGTGATTGGGATTTGGGCAAGAGGAGGCAATGGTAGATCAGCTTTAGCTAAATTTGTTTATCAGAACATCTGTCAACACTTCGAAAGCCATTGTTTCTTGGAAAGTGTGAAAAGGATTTCTCAGGATCGCCACCTGTCTCACTTACACGAAGAGTTTATGATACGGATTCAAGGAGAATGCTTGAGTAAATTAAGGCTCAAGAACCAAAAGGTTCTGCTCGTGGCTGATGATGTGAATAAGCTTGAACAGTTAGATGCTCTTGCAGAGGACTTTAACTGCTTTGGTCCTGGGAGTATAGTTATTATCACTACACAAGACAGGCAGCTGCTTATCTCTGCTGGCATAAAACTTGTTTATGAAGTAGAGCTTCTCAGATTCCAGAAAGTTCGTGGACTCTTCAGACAATTAGCCTTCAAAGAGAAAGACATTTCTGCTGCGTTCGAGGTGTCTTTGTATAGGGCAACGAATGTTGCCATGGAATGGTTAGGTTGTATATGTGGTAGATCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

379

Amino Acids

43.57

Weight (kDa)

8.76

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 10 - 188 1.5e-61 TIR domain
TIR_2 PF13676 13 - 110 2.3e-13 TIR domain
NB-ARC PF00931 201 - 350 1.7e-09 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1107
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 70
AclWI GGATC 3 cut(s) 317, 330, 759
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 3 cut(s) 601, 607, 677
AcuI CTGAAG 2 cut(s) 34, 1009
AfiI CCNNNNNNNGG 2 cut(s) 189, 1107
AgsI TTSAA 8 cut(s) 15, 145, 188, 560, 601, 797, 872, 1042
AjnI CCWGG 1 cut(s) 913
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 5 cut(s) 220, 240, 251, 334, 768
AlwI GGATC 3 cut(s) 317, 330, 759
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 5 cut(s) 72, 230, 949, 952, 1061
ApoI RAATTY 3 cut(s) 601, 607, 677
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 911
AsuHPI GGTGA 1 cut(s) 581
AsuII TTCGAA 4 cut(s) 106, 118, 276, 708
AvaII GGWCC 1 cut(s) 911
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 2 cut(s) 258, 290
BauI CACGAG 2 cut(s) 257, 845
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 5 cut(s) 84, 217, 939, 961, 1048
BccI CCATC 1 cut(s) 478
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 915
BcoDI GTCTC 5 cut(s) 220, 240, 251, 334, 768
BisI GCNGC 6 cut(s) 70, 73, 231, 950, 953, 1062
BlsI GCNGC 6 cut(s) 71, 74, 232, 951, 954, 1063
Bme1390I CCNGG 1 cut(s) 915
Bme18I GGWCC 1 cut(s) 911
BmgT120I GGNCC 1 cut(s) 911
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 915
BmsI GCATC 2 cut(s) 559, 871
Bpu14I TTCGAA 4 cut(s) 106, 118, 276, 708
BpuEI CTTGAG 3 cut(s) 278, 809, 829
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 914, 1101
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 1107
Bse3DI GCAATG 2 cut(s) 550, 661
BseBI CCWGG 1 cut(s) 915
BseDI CCNNGG 2 cut(s) 914, 1101
BseLI CCNNNNNNNGG 2 cut(s) 189, 1107
BseMI GCAATG 2 cut(s) 550, 661
BseMII CTCAG 3 cut(s) 35, 761, 1012
BseRI GAGGAG 2 cut(s) 352, 663
BseXI GCAGC 5 cut(s) 84, 217, 939, 961, 1048
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 3 cut(s) 154, 167, 447
BslI CCNNNNNNNGG 2 cut(s) 189, 1107
BsmAI GTCTC 5 cut(s) 220, 240, 251, 334, 768
BsmBI CGTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 809
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 220
Bsp119I TTCGAA 4 cut(s) 106, 118, 276, 708
Bsp1286I GDGCHC 2 cut(s) 258, 290
Bsp143I GATC 6 cut(s) 322, 345, 391, 662, 751, 1130
Bsp19I CCATGG 1 cut(s) 1101
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 3 cut(s) 36, 760, 1011
BspFNI CGCG 1 cut(s) 180
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 3 cut(s) 317, 330, 759
BspQI GCTCTTC 2 cut(s) 246, 591
BspT104I TTCGAA 4 cut(s) 106, 118, 276, 708
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 2 cut(s) 550, 661
BssECI CCNNGG 2 cut(s) 914, 1101
BssMI GATC 6 cut(s) 322, 345, 391, 662, 751, 1130
BssSI CACGAG 2 cut(s) 257, 845
BssT1I CCWWGG 1 cut(s) 1101
Bst2BI CACGAG 2 cut(s) 257, 845
Bst2UI CCWGG 1 cut(s) 915
Bst4CI ACNGT 3 cut(s) 366, 593, 876
Bst6I CTCTTC 4 cut(s) 246, 591, 771, 1028
BstBI TTCGAA 4 cut(s) 106, 118, 276, 708
BstC8I GCNNGC 3 cut(s) 290, 420, 967
BstDEI CTNAG 4 cut(s) 44, 612, 747, 998
BstDSI CCRYGG 1 cut(s) 1101
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 6 cut(s) 325, 348, 394, 665, 754, 1133
BstMAI GTCTC 5 cut(s) 220, 240, 251, 334, 768
BstMBI GATC 6 cut(s) 322, 345, 391, 662, 751, 1130
BstNI CCWGG 1 cut(s) 915
BstSCI CCNGG 1 cut(s) 913
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 5 cut(s) 84, 217, 939, 961, 1048
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 1101
Cac8I GCNNGC 3 cut(s) 290, 420, 967
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 911
CseI GACGC 1 cut(s) 222
CviAII CATG 9 cut(s) 283, 301, 332, 377, 395, 411, 459, 577, 1102
DdeI CTNAG 4 cut(s) 44, 612, 747, 998
DpnI GATC 6 cut(s) 324, 347, 393, 664, 753, 1132
DpnII GATC 6 cut(s) 322, 345, 391, 662, 751, 1130
DraI TTTAAA 2 cut(s) 127, 606
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 4 cut(s) 246, 591, 771, 1028
EarI CTCTTC 4 cut(s) 246, 591, 771, 1028
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 1101
Eco24I GRGCYC 2 cut(s) 258, 290
Eco31I GGTCTC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 911
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 34, 1009
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 913
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 1101
EcoT38I GRGCYC 2 cut(s) 258, 290
ErhI CCWWGG 1 cut(s) 1101
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 9 cut(s) 286, 304, 335, 380, 398, 414, 462, 580, 1105
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FatI CATG 9 cut(s) 282, 300, 331, 376, 394, 410, 458, 576, 1101
Fnu4HI GCNGC 6 cut(s) 70, 73, 231, 950, 953, 1062
FriOI GRGCYC 2 cut(s) 258, 290
Fsp4HI GCNGC 6 cut(s) 70, 73, 231, 950, 953, 1062
GlaI GCGC 1 cut(s) 181
GluI GCNGC 6 cut(s) 70, 73, 231, 950, 953, 1062
HaeIII GGCC 1 cut(s) 153
HapII CCGG 3 cut(s) 154, 167, 447
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 182
Hin1II CATG 9 cut(s) 286, 304, 335, 380, 398, 414, 462, 580, 1105
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 2 cut(s) 426, 701
HindII GTYRAC 2 cut(s) 426, 701
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 8 cut(s) 8, 57, 103, 198, 476, 793, 1002, 1020
HpaII CCGG 3 cut(s) 154, 167, 447
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 3 cut(s) 426, 701, 1019
Hpy188I TCNGA 7 cut(s) 7, 45, 53, 350, 690, 1001, 1028
Hpy188III TCNNGA 7 cut(s) 195, 248, 259, 395, 749, 826, 1006
Hpy8I GTNNAC 3 cut(s) 426, 701, 1019
HpyAV CCTTC 3 cut(s) 182, 554, 1048
HpyCH4III ACNGT 3 cut(s) 366, 593, 876
HpyCH4V TGCA 2 cut(s) 572, 890
HpyF3I CTNAG 4 cut(s) 44, 612, 747, 998
Hsp92II CATG 9 cut(s) 286, 304, 335, 380, 398, 414, 462, 580, 1105
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 6 cut(s) 322, 345, 391, 662, 751, 1130
LguI GCTCTTC 2 cut(s) 246, 591
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 5 cut(s) 84, 217, 939, 961, 1048
LweI GCATC 2 cut(s) 559, 871
MaeIII GTNAC 1 cut(s) 551
MalI GATC 6 cut(s) 324, 347, 393, 664, 753, 1132
MboI GATC 6 cut(s) 322, 345, 391, 662, 751, 1130
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 258, 290
MluCI AATT 8 cut(s) 223, 430, 495, 601, 607, 677, 815, 1031
MlyI GAGTC 3 cut(s) 51, 470, 1014
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 5 cut(s) 126, 369, 605, 818, 900
MslI CAYNNNNRTG 1 cut(s) 463
MspA1I CMGCKG 1 cut(s) 952
MspI CCGG 3 cut(s) 154, 167, 447
MspR9I CCNGG 1 cut(s) 915
Mva1269I GAATGC 1 cut(s) 809
MvaI CCWGG 1 cut(s) 915
MvnI CGCG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 1101
NdeII GATC 6 cut(s) 322, 345, 391, 662, 751, 1130
NlaIII CATG 9 cut(s) 286, 304, 335, 380, 398, 414, 462, 580, 1105
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 551
NspV TTCGAA 4 cut(s) 106, 118, 276, 708
PagI TCATGA 1 cut(s) 394
PciSI GCTCTTC 2 cut(s) 246, 591
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 809
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 5 cut(s) 8, 103, 198, 793, 1002
PflMI CCANNNNNTGG 1 cut(s) 1107
PkrI GCNGC 6 cut(s) 71, 74, 232, 951, 954, 1063
PleI GAGTC 3 cut(s) 51, 470, 1014
PpsI GAGTC 3 cut(s) 51, 470, 1014
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 913
PspGI CCWGG 1 cut(s) 913
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 911
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 952
RseI CAYNNNNRTG 1 cut(s) 463
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 2 cut(s) 246, 591
SaqAI TTAA 5 cut(s) 126, 369, 605, 818, 900
SatI GCNGC 6 cut(s) 70, 73, 231, 950, 953, 1062
Sau3AI GATC 6 cut(s) 322, 345, 391, 662, 751, 1130
Sau96I GGNCC 1 cut(s) 911
SchI GAGTC 3 cut(s) 51, 470, 1014
ScrFI CCNGG 1 cut(s) 915
SduI GDGCHC 2 cut(s) 258, 290
SfaNI GCATC 2 cut(s) 559, 871
SfuI TTCGAA 4 cut(s) 106, 118, 276, 708
SinI GGWCC 1 cut(s) 911
SmiI ATTTAAAT 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 463
SmlI CTYRAG 3 cut(s) 293, 808, 824
SmoI CTYRAG 3 cut(s) 293, 808, 824
Sse9I AATT 8 cut(s) 223, 430, 495, 601, 607, 677, 815, 1031
SsiI CCGC 1 cut(s) 70
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 913
StyI CCWWGG 1 cut(s) 1101
SwaI ATTTAAAT 1 cut(s) 606
TaaI ACNGT 3 cut(s) 366, 593, 876
TasI AATT 8 cut(s) 223, 430, 495, 601, 607, 677, 815, 1031
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 5 cut(s) 8, 103, 198, 793, 1002
Tru1I TTAA 5 cut(s) 126, 369, 605, 818, 900
Tru9I TTAA 5 cut(s) 126, 369, 605, 818, 900
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 5 cut(s) 72, 230, 949, 952, 1061
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 5 cut(s) 67, 399, 447, 593, 999
TspGWI ACGGA 3 cut(s) 208, 315, 805
Van91I CCANNNNNTGG 1 cut(s) 1107
VpaK11BI GGWCC 1 cut(s) 911
XapI RAATTY 3 cut(s) 601, 607, 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 1013
XmnI GAANNNNTTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.