Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016593

Physical Location & Seq

Genomic Coordinates Forward (+)

1636561 .. 1639404

Gene Structure 2844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G012000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGAGAAGCTCAAACTGGATGGATGTTCGATGTGTTCGTAAGTTTCAGAACTGAGGACACTGGCAAAAACTTCACTGATCATCTATACAATGCTCTGGATCAAAAGGGAATTGTCACCTTCAGACACGACGCACTTGAGAGAGGAAAACCCATTTCCACAGAAATTCTGAAAACGATCAGAGAATCAAGGTTTTCGATCGTTGTCTTCTCAAGAAGCTATGCTTGTTCAAATCGGTGCTTGGATGAGCTTGTGGGGATCCTTGAGTGCATGAAATCAAAGGGTCAGACCGTTTTCCCAGTTTTCTATGACGTGGATCCATCTGATGTGCGCAAACAGAAGGGTTGTTTTGAGAAAGCTCTTTGTGAACATGTGCAATTCATGGACAAGGTGGAGAGCTGGAGGGCTGCACTGAAAGAGGCAGCTAATCTCTCTGGATGGGATTTGAAGAACAAGTTCGAGTCAAAAGTTATCCAAGAGATTGCTGAAAGGATATTCAATCAATTGAGCCAAGAGGTTTCAAGTGCGCTCAAGGATTTAGTTGGAATAGATTCCCTCGTCAAGGAAATGAATATGTACTTAGATACGGGGGAGGATGATGTTCGCATTACAGGAATCTGTGGGGAGAAAGGAATAGGCAAGACAACTATTGCTCAAGCTGTTTTTGACAGTCTGTCTGTCCGATTTGATGGTAGCAGCTTTCTTGCCAACATAAAAGAAGTTTCTGAAAAACAAGGCCTAGTTCCATTACAGGAACAACTTATTTCAGAAATCCTCATGGCAAGGAATATGAAGATAAGGAATGTTCATAGAGGCGTCAATACAATCAGAAACAGCCTATGCCGTAAAAAGATTCTTCTTGTTCTCGATGGCGTGGATCGATTAGAACAACTAGAAAACTTAGCTGGAAACCGTAATTGGTTTGGTGCGGGAAGTAGAATCATAATAACAACCAGGGACGAAAACTTGCTGATCAGATATGGAGTGGACAGAAAATACAGAGCAGCGGAGTTGAATCATGATGACGCTCTTCGGCTCTTTTGCTGGAAAGCCTTTAAGCAAGGCCGTCCCCCAGAGGATTATGCAGGACTATGCAACCTTGTTTTAGATCATGCTAAGGGCGTCCCTTCAGCACTTGAAGCTTTGGGGTCGTTCTTGTTTGGTAGGAGTTTACCCGAATGGCAAGGTGCCGTGGATAGACTAGCTCAAGTTCCTTGCACGTGGGATTACTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

413

Amino Acids

46.63

Weight (kDa)

6.63

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17615 AT1G72890 AT1G72890 AT1G72900 AT1G72910 AT1G72920 AT1G72930 AT1G72940 AT1G72950
malus_domestica	MD12G1010100.v1.1
prunus_persica	Prupe.6G109900_v2.0.a1 Prupe.6G110100_v2.0.a1 Prupe.7G012000_v2.0.a1
pyrus_communis	pycom12g00780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	1187
AciI	CCGC	2 cut(s)	929, 1007
AclWI	GGATC	6 cut(s)	108, 253, 266, 311, 324, 885
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	2 cut(s)	106, 1113
AcvI	CACGTG	1 cut(s)	1221
AcyI	GRCGYC	2 cut(s)	816, 1122
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	6 cut(s)	231, 448, 499, 522, 1015, 1139
AhdI	GACNNNNNGTC	1 cut(s)	673
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	953
AjuI	GAANNNNNNNTTGG	2 cut(s)	901, 933
AlwI	GGATC	6 cut(s)	108, 253, 266, 311, 324, 885
AoxI	GGCC	2 cut(s)	736, 1063
ApeKI	GCWGC	4 cut(s)	407, 422, 696, 1004
ApoI	RAATTY	1 cut(s)	165
Asp700I	GAANNNNTTC	2 cut(s)	455, 550
AspLEI	GCGC	2 cut(s)	333, 529
AsuHPI	GGTGA	1 cut(s)	109
BamHI	GGATCC	2 cut(s)	258, 316
BanI	GGYRCC	1 cut(s)	1187
BbrPI	CACGTG	1 cut(s)	1221
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	394, 434, 708, 1016
BccI	CCATC	5 cut(s)	15, 328, 432, 683, 863
BceAI	ACGGC	3 cut(s)	828, 1050, 1175
BciT130I	CCWGG	1 cut(s)	955
BclI	TGATCA	2 cut(s)	79, 972
BfaI	CTAG	3 cut(s)	740, 893, 1202
BisI	GCNGC	4 cut(s)	408, 423, 697, 1005
BlsI	GCNGC	4 cut(s)	409, 424, 698, 1006
Bme1390I	CCNGG	1 cut(s)	955
BmeRI	GACNNNNNGTC	1 cut(s)	673
BmgBI	CACGTC	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	260, 318, 1189
BmrFI	CCNGG	1 cut(s)	955
BmrI	ACTGGG	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	6 cut(s)	158, 196, 284, 515, 639, 1191
Bsa29I	ATCGAT	1 cut(s)	880
BsaAI	YACGTR	1 cut(s)	1221
BsaHI	GRCGYC	2 cut(s)	816, 1122
BsaJI	CCNNGG	2 cut(s)	954, 1191
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	3 cut(s)	22, 67, 299
BseBI	CCWGG	1 cut(s)	955
BseCI	ATCGAT	1 cut(s)	880
BseDI	CCNNGG	2 cut(s)	954, 1191
BseGI	GGATG	5 cut(s)	26, 30, 250, 443, 601
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	22, 67, 299
BseXI	GCAGC	4 cut(s)	394, 434, 708, 1016
BsgI	GTGCAG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	738, 1065
BshNI	GGYRCC	1 cut(s)	1187
BshVI	ATCGAT	1 cut(s)	880
BsiEI	CGRYCG	1 cut(s)	201
BslFI	GGGAC	3 cut(s)	971, 1053, 1109
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmFI	GGGAC	3 cut(s)	971, 1053, 1109
BsnI	GGCC	2 cut(s)	738, 1065
Bsp143I	GATC	9 cut(s)	79, 100, 177, 198, 258, 316, 877, 972, 1108
BspACI	CCGC	2 cut(s)	929, 1007
BspANI	GGCC	2 cut(s)	738, 1065
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	1018
BspLI	GGNNCC	3 cut(s)	260, 318, 1189
BspPI	GGATC	6 cut(s)	108, 253, 266, 311, 324, 885
BspQI	GCTCTTC	1 cut(s)	1035
BspT107I	GGYRCC	1 cut(s)	1187
BsrI	ACTGG	3 cut(s)	22, 67, 299
BssECI	CCNNGG	2 cut(s)	954, 1191
BssMI	GATC	9 cut(s)	79, 100, 177, 198, 258, 316, 877, 972, 1108
BssNI	GRCGYC	2 cut(s)	816, 1122
Bst2UI	CCWGG	1 cut(s)	955
Bst4CI	ACNGT	3 cut(s)	292, 671, 914
Bst6I	CTCTTC	1 cut(s)	1035
BstACI	GRCGYC	2 cut(s)	816, 1122
BstBAI	YACGTR	1 cut(s)	1221
BstDEI	CTNAG	4 cut(s)	54, 580, 901, 1116
BstDSI	CCRYGG	1 cut(s)	1191
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	5 cut(s)	26, 30, 250, 443, 601
BstHHI	GCGC	2 cut(s)	333, 529
BstKTI	GATC	9 cut(s)	82, 103, 180, 201, 261, 319, 880, 975, 1111
BstMBI	GATC	9 cut(s)	79, 100, 177, 198, 258, 316, 877, 972, 1108
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	1139
BstNI	CCWGG	1 cut(s)	955
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	953
BstV1I	GCAGC	4 cut(s)	394, 434, 708, 1016
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	258, 316
BstYI	RGATCY	2 cut(s)	258, 316
Bsu15I	ATCGAT	1 cut(s)	880
BsuRI	GGCC	2 cut(s)	738, 1065
BsuTUI	ATCGAT	1 cut(s)	880
BtgI	CCRYGG	1 cut(s)	1191
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	5 cut(s)	26, 30, 250, 443, 601
BtsIMutI	CAGTG	3 cut(s)	60, 75, 410
CciI	TCATGA	1 cut(s)	1018
CfoI	GCGC	2 cut(s)	333, 529
ClaI	ATCGAT	1 cut(s)	880
CseI	GACGC	4 cut(s)	140, 805, 1034, 1111
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	6 cut(s)	271, 371, 382, 778, 1019, 1112
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	4 cut(s)	54, 580, 901, 1116
DpnI	GATC	9 cut(s)	81, 102, 179, 200, 260, 318, 879, 974, 1110
DpnII	GATC	9 cut(s)	79, 100, 177, 198, 258, 316, 877, 972, 1108
DriI	GACNNNNNGTC	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	1035
Eam1105I	GACNNNNNGTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	1035
Eco147I	AGGCCT	1 cut(s)	738
Eco57I	CTGAAG	2 cut(s)	106, 1113
Eco72I	CACGTG	1 cut(s)	1221
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	953
FaeI	CATG	6 cut(s)	274, 374, 385, 781, 1022, 1115
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FaqI	GGGAC	3 cut(s)	971, 1053, 1109
FatI	CATG	6 cut(s)	270, 370, 381, 777, 1018, 1111
FauI	CCCGC	1 cut(s)	922
FbaI	TGATCA	2 cut(s)	79, 972
Fnu4HI	GCNGC	4 cut(s)	408, 423, 697, 1005
FokI	GGATG	5 cut(s)	33, 37, 257, 450, 608
Fsp4HI	GCNGC	4 cut(s)	408, 423, 697, 1005
FspBI	CTAG	3 cut(s)	740, 893, 1202
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	2 cut(s)	332, 528
GluI	GCNGC	4 cut(s)	408, 423, 697, 1005
GsuI	CTGGAG	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	738, 1065
HgaI	GACGC	4 cut(s)	140, 805, 1034, 1111
HhaI	GCGC	2 cut(s)	333, 529
Hin1I	GRCGYC	2 cut(s)	816, 1122
Hin1II	CATG	6 cut(s)	274, 374, 385, 781, 1022, 1115
Hin6I	GCGC	2 cut(s)	331, 527
HinP1I	GCGC	2 cut(s)	331, 527
HindIII	AAGCTT	1 cut(s)	1140
HinfI	GANTC	7 cut(s)	185, 461, 551, 615, 853, 939, 1015
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	3 cut(s)	368, 988, 1172
Hpy188III	TCNNGA	5 cut(s)	98, 213, 435, 866, 1019
Hpy8I	GTNNAC	3 cut(s)	368, 988, 1172
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	130, 334, 1137
HpyCH4III	ACNGT	3 cut(s)	292, 671, 914
HpyCH4IV	ACGT	2 cut(s)	312, 1220
HpyCH4V	TGCA	6 cut(s)	270, 376, 410, 1085, 1095, 1218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1139
HpyF3I	CTNAG	4 cut(s)	54, 580, 901, 1116
HpySE526I	ACGT	2 cut(s)	312, 1220
Hsp92I	GRCGYC	2 cut(s)	816, 1122
Hsp92II	CATG	6 cut(s)	274, 374, 385, 781, 1022, 1115
HspAI	GCGC	2 cut(s)	331, 527
Ksp22I	TGATCA	2 cut(s)	79, 972
Kzo9I	GATC	9 cut(s)	79, 100, 177, 198, 258, 316, 877, 972, 1108
LguI	GCTCTTC	1 cut(s)	1035
Lsp1109I	GCAGC	4 cut(s)	394, 434, 708, 1016
MaeI	CTAG	3 cut(s)	740, 893, 1202
MaeII	ACGT	2 cut(s)	312, 1220
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	9 cut(s)	81, 102, 179, 200, 260, 318, 879, 974, 1110
MboI	GATC	9 cut(s)	79, 100, 177, 198, 258, 316, 877, 972, 1108
MboII	GAAGA	5 cut(s)	199, 460, 805, 848, 1022
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	2 cut(s)	258, 316
MluCI	AATT	5 cut(s)	111, 165, 377, 503, 916
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	523
MroXI	GAANNNNTTC	2 cut(s)	455, 550
MseI	TTAA	2 cut(s)	1056, 1232
MspA1I	CMGCKG	1 cut(s)	1007
MspR9I	CCNGG	1 cut(s)	955
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	955
MwoI	GCNNNNNNNGC	1 cut(s)	1139
NdeII	GATC	9 cut(s)	79, 100, 177, 198, 258, 316, 877, 972, 1108
NlaIII	CATG	6 cut(s)	274, 374, 385, 781, 1022, 1115
NlaIV	GGNNCC	3 cut(s)	260, 318, 1189
NmuCI	GTSAC	1 cut(s)	115
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	1 cut(s)	374
PagI	TCATGA	1 cut(s)	1018
PceI	AGGCCT	1 cut(s)	738
PciI	ACATGT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	1035
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	455, 550
PfeI	GAWTC	6 cut(s)	185, 551, 615, 853, 939, 1015
PkrI	GCNGC	4 cut(s)	409, 424, 698, 1006
Ple19I	CGATCG	1 cut(s)	201
PleI	GAGTC	1 cut(s)	469
PmaCI	CACGTG	1 cut(s)	1221
PmlI	CACGTG	1 cut(s)	1221
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	1221
PscI	ACATGT	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	953
PspCI	CACGTG	1 cut(s)	1221
PspGI	CCWGG	1 cut(s)	953
PspN4I	GGNNCC	3 cut(s)	260, 318, 1189
PsuI	RGATCY	2 cut(s)	258, 316
PvuI	CGATCG	1 cut(s)	201
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SapI	GCTCTTC	1 cut(s)	1035
SaqAI	TTAA	2 cut(s)	1056, 1232
SatI	GCNGC	4 cut(s)	408, 423, 697, 1005
Sau3AI	GATC	9 cut(s)	79, 100, 177, 198, 258, 316, 877, 972, 1108
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	955
SmlI	CTYRAG	6 cut(s)	137, 211, 263, 530, 654, 1206
SmoI	CTYRAG	6 cut(s)	137, 211, 263, 530, 654, 1206
Sse9I	AATT	5 cut(s)	111, 165, 377, 503, 916
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	2 cut(s)	929, 1007
SspMI	CTAG	3 cut(s)	740, 893, 1202
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	953
TaaI	ACNGT	3 cut(s)	292, 671, 914
TaiI	ACGT	2 cut(s)	315, 1223
TaqI	TCGA	5 cut(s)	30, 197, 459, 867, 880
TasI	AATT	5 cut(s)	111, 165, 377, 503, 916
TatI	WGTACW	1 cut(s)	576
TfiI	GAWTC	6 cut(s)	185, 551, 615, 853, 939, 1015
Tru1I	TTAA	2 cut(s)	1056, 1232
Tru9I	TTAA	2 cut(s)	1056, 1232
TscAI	CASTG	3 cut(s)	67, 82, 417
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	4 cut(s)	407, 422, 696, 1004
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	5 cut(s)	287, 370, 584, 797, 806
TspRI	CASTG	3 cut(s)	67, 82, 417
XagI	CCTNNNNNAGG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	1 cut(s)	374
XmnI	GAANNNNTTC	2 cut(s)	455, 550
XspI	CTAG	3 cut(s)	740, 893, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.