Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016593

Physical Location & Seq

Genomic Coordinates Forward (+)

27435306 .. 27437192

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTTCTCATACTGCAACTAAGTACGATGTTTTCCTAAGTTTCAGAGGGCATGACACTCGCCAGAACTTCATCAGTTTTCTCTACAAAGAACTGGTTCGAAGGAGCATTCGAACCTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGTCGGAGCTCAAACGCACCATCGAGGTGTCAAGATTCGCCGTCGTTGTTGTCTCAGAGACCTATGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGTAACGATCATGGATTTCGAAAAAAAGGGTTCCATCACCGTGATGCCCATCTTCTACGGCGTGGAACCGAATCATGTGAGGTGGCAGACCGGAGTACTCGCTGAACAGTTTAAGAAACATGGGAGTAGAGAAGATCATGAGAAAGTGCTTAAATGGAGGCAAGCATTGACCAATTTTGCGCAACTCTCCGGCGATTGTTCAGGTGATGATGACTCGAAGCTGGTGGACAAAATTGCTAACGAGATATCAAACAAGAAGACGATTTATGCAACAATAAACAATGGGAAGAATCTAGTTGGGATTGATACACACATGAAGGAACTAAACCGATTAATGCATATGAATTGCAACAAAGTTACTGTAAGAATGGTTGGGATTTGGGCAAGAGGAGGCGATGGTAGATCAGCTCTAGCTAAATATGTTTATCAGACATCTTGTCAACAGTTTGACAGCCATTGTTTTCTTGGAAACGTGAAAACGATTTCTCAGGGTCGCCACTCAGCGCATCTACACGACGAGTTTCTGAGAAATATTAAAAGAGAAGACTCTAACAAACAATGTCTTAAGAATCAAAAGGTTCTGCTTGTGGCAGACAACGTTACTAAGGTTAAACAGTTAGAAGCTCTTGCAGGGGATTTCAGCAGTTTTGGTCCTGGGAGTGTTGTTATTATCACTACAGACAACAAGGGGTTGTTGAATTCTTATGGTATAACAGATGTCTACGAAGTTGAGCATTTGAAGTTTTGTGGAATCTTACGATCATTGGGCTTTAAAAAGAGAGCTGCTGCGTTCCAGCGGGCTTTGTGTAGAGCAAAGAGTTTTGCCACGGAATGTTTTTGTTGTCAAAGTAGTAGTATATCTGGTTATGGGAAAGTGACAGATTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

380

Amino Acids

42.9

Weight (kDa)

9.11

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	8 - 185	2.4e-63	TIR domain
TIR_2	PF13676	11 - 107	1.9e-14	TIR domain
NB-ARC	PF00931	193 - 330	9.3e-07	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17615 AT1G72890 AT1G72890 AT1G72900 AT1G72910 AT1G72920 AT1G72930 AT1G72940 AT1G72950
malus_domestica	MD12G1010100.v1.1
prunus_persica	Prupe.6G109900_v2.0.a1 Prupe.6G110100_v2.0.a1 Prupe.7G012000_v2.0.a1
pyrus_communis	pycom12g00780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	972
AciI	CCGC	1 cut(s)	1048
AclI	AACGTT	1 cut(s)	849
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	949
AfaI	GTAC	2 cut(s)	26, 348
AflII	CTTAAG	1 cut(s)	815
AgsI	TTSAA	3 cut(s)	121, 949, 991
AhdI	GACNNNNNGTC	1 cut(s)	687
AjnI	CCWGG	1 cut(s)	904
AluBI	AGCT	8 cut(s)	136, 166, 250, 472, 659, 665, 875, 1034
AluI	AGCT	8 cut(s)	136, 166, 250, 472, 659, 665, 875, 1034
Alw21I	GWGCWC	2 cut(s)	168, 252
Alw26I	GTCTC	3 cut(s)	209, 214, 245
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	224, 1034, 1037
ApoI	RAATTY	1 cut(s)	949
AseI	ATTAAT	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	433, 757
AspS9I	GGNCC	1 cut(s)	902
AsuHPI	GGTGA	2 cut(s)	280, 467
AsuII	TTCGAA	3 cut(s)	100, 112, 270
AvaII	GGWCC	1 cut(s)	902
BalI	TGGCCA	1 cut(s)	147
BanII	GRGCYC	2 cut(s)	168, 252
BbsI	GAAGAC	3 cut(s)	222, 515, 801
Bbv12I	GWGCWC	2 cut(s)	168, 252
BbvI	GCAGC	3 cut(s)	211, 1021, 1024
BccI	CCATC	4 cut(s)	185, 293, 308, 641
BceAI	ACGGC	2 cut(s)	182, 325
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	906
BcoDI	GTCTC	3 cut(s)	209, 214, 245
BfaI	CTAG	2 cut(s)	545, 662
BfmI	CTRYAG	1 cut(s)	927
BfrI	CTTAAG	1 cut(s)	815
BisI	GCNGC	3 cut(s)	225, 1035, 1038
BlsI	GCNGC	3 cut(s)	226, 1036, 1039
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	906
Bme18I	GGWCC	1 cut(s)	902
BmeRI	GACNNNNNGTC	1 cut(s)	687
BmgT120I	GGNCC	1 cut(s)	902
BmiI	GGNNCC	2 cut(s)	283, 318
BmrFI	CCNGG	1 cut(s)	906
BmsI	GCATC	2 cut(s)	285, 766
BpiI	GAAGAC	3 cut(s)	222, 515, 801
BpmI	CTGGAG	1 cut(s)	158
Bpu14I	TTCGAA	3 cut(s)	100, 112, 270
BsaBI	GATNNNNATC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	905, 1077
BsaWI	WCCGGW	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	906
BseDI	CCNNGG	2 cut(s)	905, 1077
BseJI	GATNNNNATC	1 cut(s)	299
BseMII	CTCAG	4 cut(s)	225, 752, 765, 767
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	654
BseXI	GCAGC	3 cut(s)	211, 1021, 1024
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	168, 252
BsiSI	CCGG	2 cut(s)	342, 441
BsmAI	GTCTC	3 cut(s)	209, 214, 245
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	147
Bso31I	GGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	3 cut(s)	100, 112, 270
Bsp1286I	GDGCHC	2 cut(s)	168, 252
Bsp143I	GATC	4 cut(s)	258, 385, 653, 1010
BspACI	CCGC	1 cut(s)	1048
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	4 cut(s)	224, 751, 764, 768
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	283, 318
BspT104I	TTCGAA	3 cut(s)	100, 112, 270
BspTI	CTTAAG	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	905, 1077
BssMI	GATC	4 cut(s)	258, 385, 653, 1010
Bst2UI	CCWGG	1 cut(s)	906
Bst4CI	ACNGT	5 cut(s)	292, 360, 613, 696, 867
BstAFI	CTTAAG	1 cut(s)	815
BstBI	TTCGAA	3 cut(s)	100, 112, 270
BstC8I	GCNNGC	2 cut(s)	414, 1050
BstDEI	CTNAG	7 cut(s)	21, 38, 211, 738, 751, 776, 855
BstDSI	CCRYGG	1 cut(s)	1077
BstHHI	GCGC	2 cut(s)	433, 757
BstKTI	GATC	4 cut(s)	261, 388, 656, 1013
BstMAI	GTCTC	3 cut(s)	209, 214, 245
BstMBI	GATC	4 cut(s)	258, 385, 653, 1010
BstNI	CCWGG	1 cut(s)	906
BstSCI	CCNGG	1 cut(s)	904
BstSFI	CTRYAG	1 cut(s)	927
BstV1I	GCAGC	3 cut(s)	211, 1021, 1024
BstV2I	GAAGAC	3 cut(s)	222, 515, 801
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	1077
BtgZI	GCGATG	1 cut(s)	660
Cac8I	GCNNGC	2 cut(s)	414, 1050
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	2 cut(s)	433, 757
Cfr13I	GGNCC	1 cut(s)	902
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	25, 347
CviAII	CATG	6 cut(s)	53, 262, 326, 371, 389, 565
CviQI	GTAC	2 cut(s)	25, 347
DdeI	CTNAG	7 cut(s)	21, 38, 211, 738, 751, 776, 855
DpnI	GATC	4 cut(s)	260, 387, 655, 1012
DpnII	GATC	4 cut(s)	258, 385, 653, 1010
DraI	TTTAAA	1 cut(s)	1024
DriI	GACNNNNNGTC	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	145
Eam1105I	GACNNNNNGTC	1 cut(s)	687
Ecl136II	GAGCTC	2 cut(s)	166, 250
Eco24I	GRGCYC	2 cut(s)	168, 252
Eco31I	GGTCTC	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	902
Eco53kI	GAGCTC	2 cut(s)	166, 250
EcoICRI	GAGCTC	2 cut(s)	166, 250
EcoRI	GAATTC	1 cut(s)	949
EcoRII	CCWGG	1 cut(s)	904
EcoRV	GATATC	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	168, 252
FaeI	CATG	6 cut(s)	56, 265, 329, 374, 392, 568
FatI	CATG	6 cut(s)	52, 261, 325, 370, 388, 564
FauI	CCCGC	1 cut(s)	1041
FauNDI	CATATG	1 cut(s)	591
FblI	GTMKAC	1 cut(s)	972
Fnu4HI	GCNGC	3 cut(s)	225, 1035, 1038
FriOI	GRGCYC	2 cut(s)	168, 252
Fsp4HI	GCNGC	3 cut(s)	225, 1035, 1038
FspBI	CTAG	2 cut(s)	545, 662
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	2 cut(s)	432, 756
GluI	GCNGC	3 cut(s)	225, 1035, 1038
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	2 cut(s)	342, 441
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	433, 757
Hin1II	CATG	6 cut(s)	56, 265, 329, 374, 392, 568
Hin6I	GCGC	2 cut(s)	431, 755
HinP1I	GCGC	2 cut(s)	431, 755
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HinfI	GANTC	7 cut(s)	192, 322, 464, 541, 797, 820, 1002
HpaII	CCGG	2 cut(s)	342, 441
HphI	GGTGA	2 cut(s)	280, 467
Hpy166II	GTNNAC	3 cut(s)	478, 692, 973
Hpy188I	TCNGA	5 cut(s)	47, 163, 214, 681, 777
Hpy188III	TCNNGA	3 cut(s)	189, 242, 389
Hpy8I	GTNNAC	3 cut(s)	478, 692, 973
Hpy99I	CGWCG	3 cut(s)	163, 203, 770
HpyAV	CCTTC	3 cut(s)	96, 127, 562
HpyCH4III	ACNGT	5 cut(s)	292, 360, 613, 696, 867
HpyCH4IV	ACGT	2 cut(s)	723, 849
HpyCH4V	TGCA	5 cut(s)	17, 521, 589, 600, 881
HpyF3I	CTNAG	7 cut(s)	21, 38, 211, 738, 751, 776, 855
HpySE526I	ACGT	2 cut(s)	723, 849
Hsp92II	CATG	6 cut(s)	56, 265, 329, 374, 392, 568
HspAI	GCGC	2 cut(s)	431, 755
Kzo9I	GATC	4 cut(s)	258, 385, 653, 1010
LmnI	GCTCC	2 cut(s)	105, 163
Lsp1109I	GCAGC	3 cut(s)	211, 1021, 1024
LweI	GCATC	2 cut(s)	285, 766
MaeI	CTAG	2 cut(s)	545, 662
MaeII	ACGT	2 cut(s)	723, 849
MaeIII	GTNAC	4 cut(s)	253, 607, 850, 1126
MalI	GATC	4 cut(s)	260, 387, 655, 1012
MboI	GATC	4 cut(s)	258, 385, 653, 1010
MboII	GAAGA	6 cut(s)	222, 295, 395, 520, 550, 806
MhlI	GDGCHC	2 cut(s)	168, 252
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	4 cut(s)	424, 483, 595, 949
MluNI	TGGCCA	1 cut(s)	147
MlyI	GAGTC	2 cut(s)	458, 791
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	7 cut(s)	41, 144, 175, 324, 402, 632, 635
Mox20I	TGGCCA	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	591
MroXI	GAANNNNTTC	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	8 cut(s)	363, 402, 584, 786, 816, 861, 1023, 1141
MslI	CAYNNNNRTG	3 cut(s)	182, 290, 293
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	1048
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	2 cut(s)	342, 441
MspR9I	CCNGG	1 cut(s)	906
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	906
NdeI	CATATG	1 cut(s)	591
NdeII	GATC	4 cut(s)	258, 385, 653, 1010
NlaIII	CATG	6 cut(s)	56, 265, 329, 374, 392, 568
NlaIV	GGNNCC	2 cut(s)	283, 318
NmuCI	GTSAC	1 cut(s)	1126
NsbI	TGCGCA	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	591
NspV	TTCGAA	3 cut(s)	100, 112, 270
PagI	TCATGA	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	5 cut(s)	192, 322, 541, 820, 1002
PkrI	GCNGC	3 cut(s)	226, 1036, 1039
PleI	GAGTC	2 cut(s)	458, 791
PpsI	GAGTC	2 cut(s)	458, 791
PshBI	ATTAAT	1 cut(s)	584
Psp124BI	GAGCTC	2 cut(s)	168, 252
Psp1406I	AACGTT	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	904
PspGI	CCWGG	1 cut(s)	904
PspN4I	GGNNCC	2 cut(s)	283, 318
PspPI	GGNCC	1 cut(s)	902
RsaI	GTAC	2 cut(s)	26, 348
RsaNI	GTAC	2 cut(s)	25, 347
RseI	CAYNNNNRTG	3 cut(s)	182, 290, 293
SacI	GAGCTC	2 cut(s)	168, 252
SaqAI	TTAA	8 cut(s)	363, 402, 584, 786, 816, 861, 1023, 1141
SatI	GCNGC	3 cut(s)	225, 1035, 1038
Sau3AI	GATC	4 cut(s)	258, 385, 653, 1010
Sau96I	GGNCC	1 cut(s)	902
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	2 cut(s)	458, 791
ScrFI	CCNGG	1 cut(s)	906
SduI	GDGCHC	2 cut(s)	168, 252
SfaNI	GCATC	2 cut(s)	285, 766
SfcI	CTRYAG	1 cut(s)	927
SfuI	TTCGAA	3 cut(s)	100, 112, 270
SinI	GGWCC	1 cut(s)	902
SmiMI	CAYNNNNRTG	3 cut(s)	182, 290, 293
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	4 cut(s)	424, 483, 595, 949
SsiI	CCGC	1 cut(s)	1048
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	2 cut(s)	545, 662
SstI	GAGCTC	2 cut(s)	168, 252
StyD4I	CCNGG	1 cut(s)	904
TaaI	ACNGT	5 cut(s)	292, 360, 613, 696, 867
TaiI	ACGT	2 cut(s)	726, 852
TaqI	TCGA	6 cut(s)	100, 112, 180, 243, 270, 467
TasI	AATT	4 cut(s)	424, 483, 595, 949
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	5 cut(s)	192, 322, 541, 820, 1002
Tru1I	TTAA	8 cut(s)	363, 402, 584, 786, 816, 861, 1023, 1141
Tru9I	TTAA	8 cut(s)	363, 402, 584, 786, 816, 861, 1023, 1141
TseFI	GTSAC	1 cut(s)	1126
TseI	GCWGC	3 cut(s)	224, 1034, 1037
Tsp45I	GTSAC	1 cut(s)	1126
TspDTI	ATGAA	3 cut(s)	61, 581, 608
TspGWI	ACGGA	1 cut(s)	1094
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	902
VspI	ATTAAT	1 cut(s)	584
XapI	RAATTY	1 cut(s)	949
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	2 cut(s)	545, 662
ZrmI	AGTACT	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.