AT1G72900

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016593
Physical Location & Seq
Forward (+)
27432178 .. 27433782
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72900.1

Sequence Viewer

Length: 1092 bp
ATGTCTTCTGCTACTGCGACTTATAACTACGATGTTTTTCTGAGTTTCAGAGGACCCGACACTCGCCGCAAGTTCATCAGCTTTCTCTACAAAGAACTTGTTGGAAGGGACATTCGAACCTTTAAAGACGACAAAGAGCTAGAGAATGGCCAGATGATTTCTCCGGAGCTCATACTCGCCATCGAGGATTCGAGATTTGCCGTCGTTGTTGTCTCCGTGAACTACGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGTAAAGATCATGGATATCCAGAAGAACAAGGGTTCCATCACCGTGATGCCTATCTTCTACGGCGTGAATCCGTGTCATTTGAGGAGGCAAATCGGAGATGTCGCTGAACAGTTTAAGAAGCACGAGGCAAGAGAAAAAGATCTTGAGAAAGTGCTTAAATGGAGGCAAGCGTTGGCCGCTTTGGCAGATATCTCCGGCGATTGTTCAGGGGAAGATGACTCGAAGCTGGTGGACGTAATCGCTGACAAGATATCAAAAGAGCTGATGATAGTTACAAGAATAAGCAATGGGAGGAACCTAGTTGGGATTGATAAACACATGAACGAACTTAACCGATTGATGGATTTGAATTCCAACAAAGGTAAGAGAATGGTTGGGATTTGGGCAAGAGGAGGAAGTTGTAGATCGGCTCTAGCTAAATATGTTTATCAGACATCCTGTCAACACTTTGATAGCCATTGTTTTCTTGGAAACGTGAAACGGATTTGTCAGGGTAACTACTTTGAAAGCCATCTACACAAAGAGTTTCTGGATAATATTCAAGGAGAAAACTCTAGCAAACAAAGTCTCAAGAAGCAAAAGGTTCTGCTTGTGGCAGACGACGTCGATAAGCTTGAACAGTTAGATGCTCTTGCAGGGGATTTCAGCGGTTTTGGTCCGGGGAGTGTTGTTATCATCACTACAAAAGATAAGCAGTTGTTGATTTCTTATGGTATACAGCTTGTCTACGAAGCTGAGTTTTTGACATTCCAGAAATTTTGTCGTAGCTTCCGATCATTGGCCTTTAAAAAGAGAGACGACATTTCTGCTGCGTTCGAGTGGGCTTTGTATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

363

Amino Acids

41.21

Weight (kDa)

8.28

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 9 - 188 1.7e-55 TIR domain
TIR_2 PF13676 12 - 110 3.6e-13 TIR domain
NB-ARC PF00931 192 - 348 4.6e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AatII GACGTC 1 cut(s) 861
AccI GTMKAC 2 cut(s) 970, 981
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 3 cut(s) 67, 432, 903
AcoI YGGCCR 2 cut(s) 148, 429
AcsI RAATTY 2 cut(s) 604, 1010
AcyI GRCGYC 1 cut(s) 858
AfiI CCNNNNNNNGG 2 cut(s) 595, 1033
AgsI TTSAA 4 cut(s) 604, 761, 797, 872
AhdI GACNNNNNGTC 1 cut(s) 693
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
Alw21I GWGCWC 2 cut(s) 171, 255
Alw26I GTCTC 4 cut(s) 217, 248, 827, 1044
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 3 cut(s) 148, 429, 1035
ApeKI GCWGC 2 cut(s) 227, 1064
ApoI RAATTY 2 cut(s) 604, 1010
AspS9I GGNCC 2 cut(s) 53, 911
AsuC2I CCSGG 1 cut(s) 915
AsuHPI GGTGA 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 115
AvaII GGWCC 2 cut(s) 53, 911
BalI TGGCCA 1 cut(s) 150
BanII GRGCYC 2 cut(s) 171, 255
BauI CACGAG 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 171, 255
BbvI GCAGC 2 cut(s) 214, 1051
BccI CCATC 4 cut(s) 188, 299, 589, 774
BceAI ACGGC 2 cut(s) 185, 331
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BcnI CCSGG 1 cut(s) 915
BcoDI GTCTC 4 cut(s) 217, 248, 827, 1044
BfaI CTAG 4 cut(s) 140, 554, 668, 810
BglI GCCNNNNNGGC 1 cut(s) 437
BglII AGATCT 1 cut(s) 394
BisI GCNGC 4 cut(s) 67, 228, 432, 1065
BlsI GCNGC 4 cut(s) 68, 229, 433, 1066
Bme1390I CCNGG 1 cut(s) 915
Bme18I GGWCC 2 cut(s) 53, 911
BmeRI GACNNNNNGTC 1 cut(s) 693
BmgT120I GGNCC 2 cut(s) 53, 911
BmiI GGNNCC 3 cut(s) 55, 289, 551
BmrFI CCNGG 1 cut(s) 915
BmsI GCATC 2 cut(s) 291, 871
BpiI GAAGAC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 115
BpuEI CTTGAG 2 cut(s) 419, 809
BpuMI CCSGG 1 cut(s) 915
BsaBI GATNNNNATC 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 858
BsaJI CCNNGG 1 cut(s) 914
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 595, 1033
Bse3DI GCAATG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 914
BseGI GGATG 1 cut(s) 689
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 2 cut(s) 595, 1033
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 2 cut(s) 32, 981
BseRI GAGGAG 2 cut(s) 352, 660
BseXI GCAGC 2 cut(s) 214, 1051
BshFI GGCC 3 cut(s) 150, 431, 1037
BsiHKAI GWGCWC 2 cut(s) 171, 255
BsiSI CCGG 3 cut(s) 164, 450, 914
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 595, 1033
BsmAI GTCTC 4 cut(s) 217, 248, 827, 1044
BsmBI CGTCTC 1 cut(s) 1044
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 3 cut(s) 150, 431, 1037
Bsp119I TTCGAA 1 cut(s) 115
Bsp1286I GDGCHC 2 cut(s) 171, 255
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 4 cut(s) 261, 394, 659, 1028
BspACI CCGC 3 cut(s) 67, 432, 903
BspANI GGCC 3 cut(s) 150, 431, 1037
BspCNI CTCAG 2 cut(s) 33, 982
BspEI TCCGGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 55, 289, 551
BspT104I TTCGAA 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 914
BssMI GATC 4 cut(s) 261, 394, 659, 1028
BssNAI GTATAC 1 cut(s) 971
BssNI GRCGYC 1 cut(s) 858
BssSI CACGAG 1 cut(s) 377
Bst1107I GTATAC 1 cut(s) 971
Bst2BI CACGAG 1 cut(s) 377
Bst4CI ACNGT 3 cut(s) 298, 366, 876
BstACI GRCGYC 1 cut(s) 858
BstBI TTCGAA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 41, 990
BstF5I GGATG 1 cut(s) 689
BstKTI GATC 4 cut(s) 264, 397, 662, 1031
BstMAI GTCTC 4 cut(s) 217, 248, 827, 1044
BstMBI GATC 4 cut(s) 261, 394, 659, 1028
BstMWI GCNNNNNNNGC 2 cut(s) 431, 437
BstSCI CCNGG 1 cut(s) 913
BstV1I GCAGC 2 cut(s) 214, 1051
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 971
BsuRI GGCC 3 cut(s) 150, 431, 1037
BtsCI GGATG 1 cut(s) 689
Cac8I GCNNGC 1 cut(s) 423
Cfr13I GGNCC 2 cut(s) 53, 911
CseI GACGC 1 cut(s) 219
CviAII CATG 2 cut(s) 265, 574
DdeI CTNAG 2 cut(s) 41, 990
DpnI GATC 4 cut(s) 263, 396, 661, 1030
DpnII GATC 4 cut(s) 261, 394, 659, 1028
DraI TTTAAA 2 cut(s) 124, 1042
DriI GACNNNNNGTC 1 cut(s) 693
EaeI YGGCCR 2 cut(s) 148, 429
Eam1105I GACNNNNNGTC 1 cut(s) 693
Ecl136II GAGCTC 2 cut(s) 169, 253
Eco24I GRGCYC 2 cut(s) 171, 255
Eco32I GATATC 3 cut(s) 271, 445, 507
Eco47I GGWCC 2 cut(s) 53, 911
Eco53kI GAGCTC 2 cut(s) 169, 253
EcoICRI GAGCTC 2 cut(s) 169, 253
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 604
EcoRV GATATC 3 cut(s) 271, 445, 507
EcoT38I GRGCYC 2 cut(s) 171, 255
Esp3I CGTCTC 1 cut(s) 1044
FaeI CATG 2 cut(s) 268, 577
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 264, 573
FblI GTMKAC 2 cut(s) 970, 981
Fnu4HI GCNGC 4 cut(s) 67, 228, 432, 1065
FokI GGATG 1 cut(s) 676
FriOI GRGCYC 2 cut(s) 171, 255
Fsp4HI GCNGC 4 cut(s) 67, 228, 432, 1065
FspBI CTAG 4 cut(s) 140, 554, 668, 810
GluI GCNGC 4 cut(s) 67, 228, 432, 1065
HaeIII GGCC 3 cut(s) 150, 431, 1037
HapII CCGG 3 cut(s) 164, 450, 914
HgaI GACGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 2 cut(s) 268, 577
HincII GTYRAC 1 cut(s) 698
HindII GTYRAC 1 cut(s) 698
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 3 cut(s) 188, 322, 473
HpaII CCGG 3 cut(s) 164, 450, 914
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 5 cut(s) 220, 487, 698, 971, 982
Hpy188I TCNGA 5 cut(s) 42, 50, 350, 687, 1028
Hpy188III TCNNGA 8 cut(s) 164, 192, 245, 274, 398, 785, 826, 1006
Hpy8I GTNNAC 5 cut(s) 220, 487, 698, 971, 982
Hpy99I CGWCG 3 cut(s) 206, 860, 863
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 3 cut(s) 298, 366, 876
HpyCH4IV ACGT 3 cut(s) 489, 729, 858
HpyCH4V TGCA 1 cut(s) 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 437
HpyF3I CTNAG 2 cut(s) 41, 990
HpySE526I ACGT 3 cut(s) 489, 729, 858
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 2 cut(s) 268, 577
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 4 cut(s) 261, 394, 659, 1028
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 2 cut(s) 214, 1051
LweI GCATC 2 cut(s) 291, 871
MaeI CTAG 4 cut(s) 140, 554, 668, 810
MaeII ACGT 3 cut(s) 489, 729, 858
MaeIII GTNAC 2 cut(s) 526, 749
MalI GATC 4 cut(s) 263, 396, 661, 1030
MboI GATC 4 cut(s) 261, 394, 659, 1028
MboII GAAGA 4 cut(s) 225, 289, 301, 479
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 171, 255
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 2 cut(s) 604, 1010
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 82, 633
MnlI CCTC 9 cut(s) 44, 178, 330, 333, 373, 411, 540, 638, 641
Mox20I TGGCCA 1 cut(s) 150
MroI TCCGGA 1 cut(s) 163
MscI TGGCCA 1 cut(s) 150
MseI TTAA 5 cut(s) 123, 369, 411, 585, 1041
MslI CAYNNNNRTG 2 cut(s) 296, 299
Msp20I TGGCCA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 903
MspI CCGG 3 cut(s) 164, 450, 914
MspR9I CCNGG 1 cut(s) 915
MwoI GCNNNNNNNGC 2 cut(s) 431, 437
NciI CCSGG 1 cut(s) 915
NdeII GATC 4 cut(s) 261, 394, 659, 1028
NlaIII CATG 2 cut(s) 268, 577
NlaIV GGNNCC 3 cut(s) 55, 289, 551
NspV TTCGAA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 1024
PfeI GAWTC 2 cut(s) 188, 322
PflFI GACNNNGTC 1 cut(s) 857
PkrI GCNGC 4 cut(s) 68, 229, 433, 1066
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PpuMI RGGWCCY 1 cut(s) 53
PsiI TTATAA 1 cut(s) 24
Psp124BI GAGCTC 2 cut(s) 171, 255
Psp5II RGGWCCY 1 cut(s) 53
PspN4I GGNNCC 3 cut(s) 55, 289, 551
PspPI GGNCC 2 cut(s) 53, 911
PspPPI RGGWCCY 1 cut(s) 53
PsuI RGATCY 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 857
RseI CAYNNNNRTG 2 cut(s) 296, 299
SacI GAGCTC 2 cut(s) 171, 255
SaqAI TTAA 5 cut(s) 123, 369, 411, 585, 1041
SatI GCNGC 4 cut(s) 67, 228, 432, 1065
Sau3AI GATC 4 cut(s) 261, 394, 659, 1028
Sau96I GGNCC 2 cut(s) 53, 911
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 915
SduI GDGCHC 2 cut(s) 171, 255
SfaNI GCATC 2 cut(s) 291, 871
SfuI TTCGAA 1 cut(s) 115
SinI GGWCC 2 cut(s) 53, 911
SmiMI CAYNNNNRTG 2 cut(s) 296, 299
SmlI CTYRAG 2 cut(s) 398, 824
SmoI CTYRAG 2 cut(s) 398, 824
Sse9I AATT 2 cut(s) 604, 1010
SsiI CCGC 3 cut(s) 67, 432, 903
SspI AATATT 1 cut(s) 793
SspMI CTAG 4 cut(s) 140, 554, 668, 810
SstI GAGCTC 2 cut(s) 171, 255
StyD4I CCNGG 1 cut(s) 913
TaaI ACNGT 3 cut(s) 298, 366, 876
TaiI ACGT 3 cut(s) 492, 732, 861
TaqI TCGA 7 cut(s) 115, 183, 191, 246, 476, 861, 1071
TasI AATT 2 cut(s) 604, 1010
TauI GCSGC 2 cut(s) 69, 434
TfiI GAWTC 2 cut(s) 188, 322
Tru1I TTAA 5 cut(s) 123, 369, 411, 585, 1041
Tru9I TTAA 5 cut(s) 123, 369, 411, 585, 1041
TseI GCWGC 2 cut(s) 227, 1064
TspDTI ATGAA 2 cut(s) 64, 590
TspGWI ACGGA 3 cut(s) 205, 315, 751
Tth111I GACNNNGTC 1 cut(s) 857
VpaK11BI GGWCC 2 cut(s) 53, 911
XapI RAATTY 2 cut(s) 604, 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 719
XmiI GTMKAC 2 cut(s) 970, 981
XspI CTAG 4 cut(s) 140, 554, 668, 810
ZraI GACGTC 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.