Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003192

Physical Location & Seq

Genomic Coordinates Forward (+)

6123567 .. 6125339

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGGGGGATGGTTTTAAGGAGAAGTTATCAGACTCTGTGTTGATAGATGAGAAGCTTGAAGAGTACAGTGATTGTGATCGAACAGCAACCACTTCCCGTTCTCACACAGATCCAGTATCTTCTCAATCTACTCACCAGACCCCGGAAAGCTTTAGGACTCCAATAACATGTGATGATGATACTTTTGTATCTGTCTCTGGGATTTCTAGGGATGTTTCAAATCTAATCCCATTCGCGACAGAGACTCCAGCTTCACCTGTTCAAGAAAAAATGGCAAACACTAGATCCTTTAGCAACAACTCTGTGAAAGGTAATCAAGATGAGTTCTTCATTGAAGACTTCGATGTTGGTCCAATGGATACCATTGATTTGTATGACATGACATTTCGAGAAGACCCCTCAGATTTTGACGACAATTTGCTATATGCAATGCGTGACAGGACTAAGCAACTCAGATCATTCAAGGTTCTCTTTCATGATGTATCTGTCATAAAATTGAATACTGTTCTCCCTGTATCTTTATTCCTAATATGTTTCTTCTTTATCATAATCATCAGAGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.55

Weight (kDa)

4.47

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT2G16575
fragaria_vesca	FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g25880
malus_domestica	MD03G1240400.v1.1 MD11G1259700.v1.1
prunus_persica	Prupe.4G170200_v2.0.a1 Prupe.4G170200_v2.0.a1
pyrus_communis	pycom03g18560 pycom11g22940
rosa_chinensis	RchiOBHm_Chr5g0031461
rosa_laevigata	RLG00000002875 RLG00000029120 RLG00000033309
rosa_multiflora	Rmu_sc0000404.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431450 Rroxscaffold_1G00048870 Rroxscaffold_6G00411210
rosa_rugosa	Rorug05G0126000
rosa_samantha	Rh5AG218800 Rh5BG218100 Rh5CG241800 Rh5DG223400
rosa_wichuraiana	Rw5G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	239
AclWI	GGATC	2 cut(s)	107, 282
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	62, 222, 266, 338, 466, 502
AluBI	AGCT	3 cut(s)	58, 153, 254
AluI	AGCT	3 cut(s)	58, 153, 254
Alw26I	GTCTC	2 cut(s)	202, 239
AlwI	GGATC	2 cut(s)	107, 282
AlwNI	CAGNNNCTG	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	128, 249
AvaII	GGWCC	1 cut(s)	353
BaeI	ACNNNNGTAYC	4 cut(s)	174, 174, 207, 207
BbsI	GAAGAC	2 cut(s)	345, 402
BccI	CCATC	1 cut(s)	5
BciVI	GTATCC	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	202, 239
BfaI	CTAG	2 cut(s)	210, 285
BfuI	GTATCC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	146
BpiI	GAAGAC	2 cut(s)	345, 402
BpmI	CTGGAG	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	16, 220
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	417, 469
BseNI	ACTGG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	202, 239
Bsp143I	GATC	4 cut(s)	79, 112, 287, 458
Bsp68I	TCGCGA	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	416, 468
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	478
BspPI	GGATC	2 cut(s)	107, 282
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	4 cut(s)	79, 112, 287, 458
Bst4CI	ACNGT	2 cut(s)	71, 508
Bst6I	CTCTTC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	403, 447, 455
BstF5I	GGATG	2 cut(s)	16, 220
BstFNI	CGCG	1 cut(s)	239
BstKTI	GATC	4 cut(s)	82, 115, 290, 461
BstMAI	GTCTC	2 cut(s)	202, 239
BstMBI	GATC	4 cut(s)	79, 112, 287, 458
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	239
BstV2I	GAAGAC	2 cut(s)	345, 402
BstX2I	RGATCY	2 cut(s)	112, 287
BstYI	RGATCY	2 cut(s)	112, 287
BsuI	GTATCC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	16, 220
BtsIMutI	CAGTG	1 cut(s)	76
BtuMI	TCGCGA	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	3 cut(s)	171, 382, 479
CviJI	RGCY	3 cut(s)	58, 153, 254
CviKI_1	RGCY	3 cut(s)	58, 153, 254
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	403, 447, 455
DpnI	GATC	4 cut(s)	81, 114, 289, 460
DpnII	GATC	4 cut(s)	79, 112, 287, 458
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	353
FaeI	CATG	3 cut(s)	174, 385, 482
FaiI	YATR	9 cut(s)	172, 378, 383, 427, 429, 480, 494, 535, 551
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FatI	CATG	3 cut(s)	170, 381, 478
FokI	GGATG	2 cut(s)	23, 227
FspBI	CTAG	2 cut(s)	210, 285
GsuI	CTGGAG	1 cut(s)	234
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	3 cut(s)	174, 385, 482
HindIII	AAGCTT	2 cut(s)	56, 151
HinfI	GANTC	3 cut(s)	35, 160, 247
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	128, 249
Hpy188I	TCNGA	4 cut(s)	34, 406, 458, 560
Hpy188III	TCNNGA	5 cut(s)	238, 266, 320, 392, 479
HpyCH4III	ACNGT	2 cut(s)	71, 508
HpyCH4V	TGCA	1 cut(s)	431
HpyF3I	CTNAG	3 cut(s)	403, 447, 455
Hsp92II	CATG	3 cut(s)	174, 385, 482
Kzo9I	GATC	4 cut(s)	79, 112, 287, 458
LpnPI	CCDG	8 cut(s)	129, 152, 159, 186, 264, 273, 427, 528
MaeI	CTAG	2 cut(s)	210, 285
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	4 cut(s)	81, 114, 289, 460
MboI	GATC	4 cut(s)	79, 112, 287, 458
MboII	GAAGA	6 cut(s)	74, 114, 322, 350, 407, 532
MflI	RGATCY	2 cut(s)	112, 287
MluCI	AATT	2 cut(s)	418, 497
MlyI	GAGTC	3 cut(s)	29, 154, 241
MnlI	CCTC	1 cut(s)	412
MseI	TTAA	1 cut(s)	18
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	239
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	4 cut(s)	79, 112, 287, 458
NlaIII	CATG	3 cut(s)	174, 385, 482
NmuCI	GTSAC	1 cut(s)	437
NruI	TCGCGA	1 cut(s)	239
NspI	RCATGY	1 cut(s)	174
PagI	TCATGA	1 cut(s)	478
PciI	ACATGT	1 cut(s)	170
PleI	GAGTC	3 cut(s)	29, 154, 241
PpsI	GAGTC	3 cut(s)	29, 154, 241
PscI	ACATGT	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	353
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	112, 287
RruI	TCGCGA	1 cut(s)	239
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	4 cut(s)	79, 112, 287, 458
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	3 cut(s)	29, 154, 241
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	6 cut(s)	60, 155, 256, 262, 316, 471
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	2 cut(s)	418, 497
SspMI	CTAG	2 cut(s)	210, 285
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	71, 508
TaqI	TCGA	3 cut(s)	82, 345, 391
TasI	AATT	2 cut(s)	418, 497
TatI	WGTACW	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	322, 467
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	353
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	2 cut(s)	210, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.