AT1G73130

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
27498929 .. 27502273
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73130.2

Sequence Viewer

Length: 1941 bp
ATGGGACCAGAATCTAAAGGACGAGCATGGTTTAGTAAAATCTACAACAAGTTGGAAAATTTGCTTGTTGAGGTTGACTCTTTCACTTCTCAGAGCACGCTTTGTTTGAAATCAAGTGAACCTCCGAGATTCGAATATGTTAGAGGTGAATCAAAGGAAGTTGCAGAGGACCATTCTTCTAATGTACAAGGACGTCATGATCGTGTTGCTTCACCGCGAAGTGAAAGTCCTTCTGATCCACCGTCACATCAGAACTTTGACATTCCAGGACATGTTTTGGTTGAGAAACGAGTTCAAGGCGATATTTTGAAAGAGAATGTAGTTCAAAGAGATAGTTTTGAGGATAATTCATCAGCTTCCTCTTCGTCTGATGGAGAAATAGAATCTACATCTCCACTGCATGAAGAGTACTGTGATGCTTATATGACATCAACCACTACTCTTAGTGATGAAGAACAATTAGTTTCTGATGAAGAGTCTCAGATATTTCCTGATGGAGAAAGACTCTCTACATCCCCATTGCTTGAAGAGTATCATGATGCTAATCTGACATCAGCCGCTAGTGTTGGTGATGAAGAACCAATAGTTACTGATAAAGAGTCGCATATCACTAAAAGTCTTTCTAATTCACCAAGTTGTAATAGTCCTTCTGATTCACCGCCATGTCAGAACTTTGACATTTTAGGACATGTTCGGGTTGAGGAACGAGTTCAAGGTGACATTTTAGTGGAGAATATAGCTCACGGAGAGAATTCATCAGCCTCCTCCTTGGATGGTGAAGAAACACTCTCCACATCTCCGTTGCTTGAAGAGCTTTGTGATGCTAATCTGACGTCAACCAGTACTCTTGGTGGTGAAGAACCAATAGTTACCGATGATGAGTCTCAGATCACTAACACTTTAACACCTCAGAAATTTTCTGCTGAAAACTCTTCTGTCTTTCCAGGCGAGGAAAGTGTACAAGAAGTTAGAGTTGAATCCTCCTTGTCTGACGAAGAAATACTCTCTAAGTCTCCATTGCTCGAAGAGCATTGTGATGCTAATCTGACATCAACCAGTACTCTTGGTGGTGAAGGACCAATAGTTACCGATGATGAGTCTCTAATCACTAACACTTTAACCCCTCAGAAATTTTCTGAAGAAGAAATACTCTCTAAGTCTCCATTGCTCGAAGAGCATTGTGATGCTAATCTGACATCAGACACTACTCTTGGTGATGAAAAACCAATAATTACGGATGATGAGTCTTGGATCAGTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTTTTTCAGGCGAGGATAGTGTAGAAGAAGTTAAAGTTAAATCGTGCAGAGATGTTGTTTCCACAGAATCTCAATCTACTCAAAGTTCTATGGAAAGTTTTGGGACTGTAGTAAAATGTAATGATGGCCCCGTTCTAGCTGCACTTGGGTGTTTTAGGGATAATGATTCAAGTCTTAATCCACTCGTCACCAAGGTTCCAGATGAAAACATGAGATCCTCTAATGCGGATAATCCAGATGATGTGATTAATAATTGCAAATCTGACGTTACTCCATTGGATACCAAGGACATTGCATTTCAAAAAGAACCCTCGTATGTTAATGACACAGTGCGTGTTAGGATCATGGCTGAACTGTGCGGCATGGAATCTCGAGAAGACCCCTTGTATGTTGAGGACAGTGAGCTTTATGCCATTCATCTTAGGACCAAGAAACTCAGATCCTTCAAGAGAAAGGTCTTGGACGTTTTAACTTCAAAGAGAAGAAGAGAGAAGGAATATGAGCAGCTTCCGATTTGGTACGGAGATGCGGGAATGGGTTCTGATCTGGCCACTAAGGAAGAGTCTCAACAAGTGGAAGCCACAGACTCCAAAAGCTCACTTTTACTTGAATCAGAAGATTCCCAGTGGGAGCTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

646

Amino Acids

71.07

Weight (kDa)

4.32

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 196, 836
AccII CGCG 1 cut(s) 217
AciI CCGC 6 cut(s) 215, 558, 659, 1526, 1659, 1829
AclWI GGATC 5 cut(s) 230, 1259, 1509, 1649, 1734
AcoI YGGCCR 1 cut(s) 1848
AcsI RAATTY 4 cut(s) 58, 751, 914, 1130
AcuI CTGAAG 1 cut(s) 1158
AcyI GRCGYC 2 cut(s) 193, 833
AfaI GTAC 6 cut(s) 186, 410, 844, 960, 1060, 1820
AflIII ACRYGT 2 cut(s) 271, 688
AjnI CCWGG 2 cut(s) 265, 943
AleI CACNNNNGTG 1 cut(s) 1447
AluBI AGCT 8 cut(s) 356, 740, 814, 1439, 1705, 1807, 1896, 1933
AluI AGCT 8 cut(s) 356, 740, 814, 1439, 1705, 1807, 1896, 1933
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 6 cut(s) 483, 888, 1017, 1104, 1164, 1869
AlwI GGATC 5 cut(s) 230, 1259, 1509, 1649, 1734
Ama87I CYCGRG 1 cut(s) 1671
AoxI GGCC 2 cut(s) 1426, 1848
ApeKI GCWGC 2 cut(s) 1439, 1804
ApoI RAATTY 4 cut(s) 58, 751, 914, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AseI ATTAAT 1 cut(s) 1548
Asp700I GAANNNNTTC 2 cut(s) 708, 1837
AspS9I GGNCC 5 cut(s) 5, 169, 1076, 1427, 1725
AsuII TTCGAA 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 1671
AvaII GGWCC 4 cut(s) 5, 169, 1076, 1725
BalI TGGCCA 1 cut(s) 1850
BarI GAAGNNNNNNTAC 4 cut(s) 631, 663, 1131, 1163
BbsI GAAGAC 1 cut(s) 1683
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 1426, 1816
BccI CCATC 4 cut(s) 365, 488, 767, 1418
BciT130I CCWGG 2 cut(s) 267, 945
BciVI GTATCC 1 cut(s) 1573
BcoDI GTCTC 6 cut(s) 483, 888, 1017, 1104, 1164, 1869
BfaI CTAG 2 cut(s) 561, 1436
BfmI CTRYAG 1 cut(s) 1407
BfuI GTATCC 1 cut(s) 1573
BisI GCNGC 4 cut(s) 558, 1440, 1660, 1805
BlsI GCNGC 4 cut(s) 559, 1441, 1661, 1806
BmcAI AGTACT 3 cut(s) 410, 844, 1060
Bme1390I CCNGG 2 cut(s) 267, 945
Bme18I GGWCC 4 cut(s) 5, 169, 1076, 1725
BmeT110I CYCGRG 1 cut(s) 1671
BmgT120I GGNCC 5 cut(s) 5, 169, 1076, 1427, 1725
BmiI GGNNCC 3 cut(s) 6, 1429, 1497
BmrFI CCNGG 2 cut(s) 267, 945
BmrI ACTGGG 1 cut(s) 1918
BmsI GCATC 6 cut(s) 406, 529, 811, 1027, 1174, 1816
BmuI ACTGGG 1 cut(s) 1918
BpiI GAAGAC 1 cut(s) 1683
BplI GAGNNNNNCTC 4 cut(s) 62, 94, 489, 521
Bpu14I TTCGAA 1 cut(s) 132
BsaBI GATNNNNATC 4 cut(s) 543, 825, 1041, 1188
BsaHI GRCGYC 2 cut(s) 193, 833
BsaJI CCNNGG 3 cut(s) 768, 1491, 1584
BsaXI ACNNNNNCTCC 1 cut(s) 1922
Bse1I ACTGG 3 cut(s) 840, 1056, 1924
Bse3DI GCAATG 4 cut(s) 518, 1016, 1163, 1590
Bse8I GATNNNNATC 4 cut(s) 543, 825, 1041, 1188
BseBI CCWGG 2 cut(s) 267, 945
BseDI CCNNGG 3 cut(s) 768, 1491, 1584
BseGI GGATG 3 cut(s) 512, 778, 1243
BseJI GATNNNNATC 4 cut(s) 543, 825, 1041, 1188
BseMI GCAATG 4 cut(s) 518, 1016, 1163, 1590
BseMII CTCAG 7 cut(s) 104, 494, 899, 923, 1139, 1286, 1750
BseNI ACTGG 3 cut(s) 840, 1056, 1924
BseRI GAGGAG 1 cut(s) 754
BseXI GCAGC 2 cut(s) 1426, 1816
BsgI GTGCAG 2 cut(s) 1366, 1425
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 1428, 1850
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 1671
BslFI GGGAC 2 cut(s) 18, 1417
BsmAI GTCTC 6 cut(s) 483, 888, 1017, 1104, 1164, 1869
BsmFI GGGAC 2 cut(s) 18, 1417
BsnI GGCC 2 cut(s) 1428, 1850
BsoBI CYCGRG 1 cut(s) 1671
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 98
Bsp1407I TGTACA 2 cut(s) 184, 958
Bsp143I GATC 8 cut(s) 199, 235, 888, 1251, 1514, 1641, 1739, 1843
BspACI CCGC 6 cut(s) 215, 558, 659, 1526, 1659, 1829
BspANI GGCC 2 cut(s) 1428, 1850
BspCNI CTCAG 7 cut(s) 103, 493, 898, 922, 1138, 1285, 1749
BspFNI CGCG 1 cut(s) 217
BspHI TCATGA 2 cut(s) 196, 535
BspLI GGNNCC 3 cut(s) 6, 1429, 1497
BspPI GGATC 5 cut(s) 230, 1259, 1509, 1649, 1734
BspQI GCTCTTC 3 cut(s) 804, 1020, 1167
BspT104I TTCGAA 1 cut(s) 132
BsrDI GCAATG 4 cut(s) 518, 1016, 1163, 1590
BsrGI TGTACA 2 cut(s) 184, 958
BsrI ACTGG 3 cut(s) 840, 1056, 1924
BssECI CCNNGG 3 cut(s) 768, 1491, 1584
BssMI GATC 8 cut(s) 199, 235, 888, 1251, 1514, 1641, 1739, 1843
BssNI GRCGYC 2 cut(s) 193, 833
BssT1I CCWWGG 3 cut(s) 768, 1491, 1584
Bst2UI CCWGG 2 cut(s) 267, 945
Bst4CI ACNGT 7 cut(s) 243, 413, 1262, 1408, 1630, 1656, 1700
BstACI GRCGYC 2 cut(s) 193, 833
BstAUI TGTACA 2 cut(s) 184, 958
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 98
BstF5I GGATG 3 cut(s) 512, 778, 1243
BstFNI CGCG 1 cut(s) 217
BstKTI GATC 8 cut(s) 202, 238, 891, 1254, 1517, 1644, 1742, 1846
BstMAI GTCTC 6 cut(s) 483, 888, 1017, 1104, 1164, 1869
BstMBI GATC 8 cut(s) 199, 235, 888, 1251, 1514, 1641, 1739, 1843
BstMWI GCNNNNNNNGC 3 cut(s) 811, 1027, 1174
BstNI CCWGG 2 cut(s) 267, 945
BstNSI RCATGY 2 cut(s) 275, 692
BstSCI CCNGG 2 cut(s) 265, 943
BstSFI CTRYAG 1 cut(s) 1407
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 1426, 1816
BstV2I GAAGAC 1 cut(s) 1683
BstX2I RGATCY 2 cut(s) 1514, 1739
BstYI RGATCY 2 cut(s) 1514, 1739
BsuI GTATCC 1 cut(s) 1573
BsuRI GGCC 2 cut(s) 1428, 1850
BtsCI GGATG 3 cut(s) 512, 778, 1243
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 4 cut(s) 395, 1635, 1705, 1931
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 2 cut(s) 196, 535
Cfr13I GGNCC 5 cut(s) 5, 169, 1076, 1427, 1725
Csp6I GTAC 6 cut(s) 185, 409, 843, 959, 1059, 1819
CviQI GTAC 6 cut(s) 185, 409, 843, 959, 1059, 1819
DpnI GATC 8 cut(s) 201, 237, 890, 1253, 1516, 1643, 1741, 1845
DpnII GATC 8 cut(s) 199, 235, 888, 1251, 1514, 1641, 1739, 1843
EaeI YGGCCR 1 cut(s) 1848
Eco130I CCWWGG 3 cut(s) 768, 1491, 1584
Eco47I GGWCC 4 cut(s) 5, 169, 1076, 1725
Eco57I CTGAAG 1 cut(s) 1158
Eco88I CYCGRG 1 cut(s) 1671
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 2 cut(s) 265, 943
EcoT14I CCWWGG 3 cut(s) 768, 1491, 1584
ErhI CCWWGG 3 cut(s) 768, 1491, 1584
FaqI GGGAC 2 cut(s) 18, 1417
FauI CCCGC 1 cut(s) 1822
Fnu4HI GCNGC 4 cut(s) 558, 1440, 1660, 1805
FokI GGATG 3 cut(s) 499, 785, 1250
Fsp4HI GCNGC 4 cut(s) 558, 1440, 1660, 1805
FspBI CTAG 2 cut(s) 561, 1436
GluI GCNGC 4 cut(s) 558, 1440, 1660, 1805
HaeIII GGCC 2 cut(s) 1428, 1850
Hin1I GRCGYC 2 cut(s) 193, 833
HincII GTYRAC 2 cut(s) 76, 837
HindII GTYRAC 2 cut(s) 76, 837
Hpy166II GTNNAC 4 cut(s) 76, 119, 837, 959
Hpy188III TCNNGA 8 cut(s) 197, 491, 536, 1499, 1535, 1671, 1673, 1747
Hpy8I GTNNAC 4 cut(s) 76, 119, 837, 959
HpyAV CCTTC 5 cut(s) 240, 657, 1067, 1753, 1786
HpyCH4III ACNGT 7 cut(s) 243, 413, 1262, 1408, 1630, 1656, 1700
HpyCH4IV ACGT 4 cut(s) 193, 833, 1566, 1764
HpyCH4V TGCA 6 cut(s) 164, 400, 1347, 1442, 1557, 1595
HpyF10VI GCNNNNNNNGC 3 cut(s) 811, 1027, 1174
HpySE526I ACGT 4 cut(s) 193, 833, 1566, 1764
Hsp92I GRCGYC 2 cut(s) 193, 833
Kzo9I GATC 8 cut(s) 199, 235, 888, 1251, 1514, 1641, 1739, 1843
LguI GCTCTTC 3 cut(s) 804, 1020, 1167
LmnI GCTCC 1 cut(s) 1930
Lsp1109I GCAGC 2 cut(s) 1426, 1816
LweI GCATC 6 cut(s) 406, 529, 811, 1027, 1174, 1816
MaeI CTAG 2 cut(s) 561, 1436
MaeII ACGT 4 cut(s) 193, 833, 1566, 1764
MaeIII GTNAC 8 cut(s) 243, 586, 716, 868, 1084, 1256, 1486, 1567
MalI GATC 8 cut(s) 201, 237, 890, 1253, 1516, 1643, 1741, 1845
MboI GATC 8 cut(s) 199, 235, 888, 1251, 1514, 1641, 1739, 1843
MflI RGATCY 2 cut(s) 1514, 1739
MhlI GDGCHC 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 1850
MluCI AATT 9 cut(s) 58, 346, 458, 625, 751, 914, 1130, 1230, 1552
MluNI TGGCCA 1 cut(s) 1850
MlyI GAGTC 9 cut(s) 71, 485, 498, 608, 890, 1106, 1253, 1871, 1880
MmeI TCCRAC 1 cut(s) 33
Mox20I TGGCCA 1 cut(s) 1850
MroXI GAANNNNTTC 2 cut(s) 708, 1837
MscI TGGCCA 1 cut(s) 1850
MseI TTAA 9 cut(s) 902, 1118, 1265, 1332, 1338, 1476, 1548, 1620, 1769
MslI CAYNNNNRTG 6 cut(s) 201, 661, 725, 1035, 1182, 1447
Msp20I TGGCCA 1 cut(s) 1850
MspR9I CCNGG 2 cut(s) 267, 945
MvaI CCWGG 2 cut(s) 267, 945
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 3 cut(s) 811, 1027, 1174
NdeII GATC 8 cut(s) 199, 235, 888, 1251, 1514, 1641, 1739, 1843
NlaIV GGNNCC 3 cut(s) 6, 1429, 1497
NmuCI GTSAC 3 cut(s) 243, 716, 1486
NspI RCATGY 2 cut(s) 275, 692
NspV TTCGAA 1 cut(s) 132
OliI CACNNNNGTG 1 cut(s) 1447
PaeR7I CTCGAG 1 cut(s) 1671
PagI TCATGA 2 cut(s) 196, 535
PciI ACATGT 2 cut(s) 271, 688
PciSI GCTCTTC 3 cut(s) 804, 1020, 1167
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 708, 1837
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 4 cut(s) 559, 1441, 1661, 1806
PleI GAGTC 9 cut(s) 71, 484, 498, 607, 889, 1105, 1252, 1870, 1880
PpsI GAGTC 9 cut(s) 71, 484, 498, 607, 889, 1105, 1252, 1870, 1880
PscI ACATGT 2 cut(s) 271, 688
PshBI ATTAAT 1 cut(s) 1548
Psp6I CCWGG 2 cut(s) 265, 943
PspGI CCWGG 2 cut(s) 265, 943
PspN4I GGNNCC 3 cut(s) 6, 1429, 1497
PspPI GGNCC 5 cut(s) 5, 169, 1076, 1427, 1725
PsuI RGATCY 2 cut(s) 1514, 1739
RsaI GTAC 6 cut(s) 186, 410, 844, 960, 1060, 1820
RsaNI GTAC 6 cut(s) 185, 409, 843, 959, 1059, 1819
RseI CAYNNNNRTG 6 cut(s) 201, 661, 725, 1035, 1182, 1447
SapI GCTCTTC 3 cut(s) 804, 1020, 1167
SaqAI TTAA 9 cut(s) 902, 1118, 1265, 1332, 1338, 1476, 1548, 1620, 1769
SatI GCNGC 4 cut(s) 558, 1440, 1660, 1805
Sau3AI GATC 8 cut(s) 199, 235, 888, 1251, 1514, 1641, 1739, 1843
Sau96I GGNCC 5 cut(s) 5, 169, 1076, 1427, 1725
ScaI AGTACT 3 cut(s) 410, 844, 1060
SchI GAGTC 9 cut(s) 71, 485, 498, 608, 890, 1106, 1253, 1871, 1880
ScrFI CCNGG 2 cut(s) 267, 945
SduI GDGCHC 1 cut(s) 98
SfaNI GCATC 6 cut(s) 406, 529, 811, 1027, 1174, 1816
SfcI CTRYAG 1 cut(s) 1407
Sfr274I CTCGAG 1 cut(s) 1671
SfuI TTCGAA 1 cut(s) 132
SinI GGWCC 4 cut(s) 5, 169, 1076, 1725
SlaI CTCGAG 1 cut(s) 1671
SmiMI CAYNNNNRTG 6 cut(s) 201, 661, 725, 1035, 1182, 1447
SmlI CTYRAG 1 cut(s) 1671
SmoI CTYRAG 1 cut(s) 1671
Sse9I AATT 9 cut(s) 58, 346, 458, 625, 751, 914, 1130, 1230, 1552
SsiI CCGC 6 cut(s) 215, 558, 659, 1526, 1659, 1829
SspMI CTAG 2 cut(s) 561, 1436
StyD4I CCNGG 2 cut(s) 265, 943
StyI CCWWGG 3 cut(s) 768, 1491, 1584
TaaI ACNGT 7 cut(s) 243, 413, 1262, 1408, 1630, 1656, 1700
TaiI ACGT 4 cut(s) 196, 836, 1569, 1767
TaqI TCGA 4 cut(s) 132, 1023, 1170, 1672
TasI AATT 9 cut(s) 58, 346, 458, 625, 751, 914, 1130, 1230, 1552
TatI WGTACW 5 cut(s) 184, 408, 842, 958, 1058
TauI GCSGC 2 cut(s) 560, 1662
Tru1I TTAA 9 cut(s) 902, 1118, 1265, 1332, 1338, 1476, 1548, 1620, 1769
Tru9I TTAA 9 cut(s) 902, 1118, 1265, 1332, 1338, 1476, 1548, 1620, 1769
TscAI CASTG 4 cut(s) 402, 1635, 1705, 1931
TseFI GTSAC 3 cut(s) 243, 716, 1486
TseI GCWGC 2 cut(s) 1439, 1804
Tsp45I GTSAC 3 cut(s) 243, 716, 1486
TspDTI ATGAA 9 cut(s) 339, 417, 465, 486, 588, 744, 1233, 1518, 1706
TspGWI ACGGA 4 cut(s) 759, 789, 1250, 1836
TspRI CASTG 4 cut(s) 402, 1635, 1705, 1931
VpaK11BI GGWCC 4 cut(s) 5, 169, 1076, 1725
VspI ATTAAT 1 cut(s) 1548
XapI RAATTY 4 cut(s) 58, 751, 914, 1130
XceI RCATGY 2 cut(s) 275, 692
XhoI CTCGAG 1 cut(s) 1671
XmnI GAANNNNTTC 2 cut(s) 708, 1837
XspI CTAG 2 cut(s) 561, 1436
ZraI GACGTC 2 cut(s) 194, 834
ZrmI AGTACT 3 cut(s) 410, 844, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.