Rroxscaffold_6G00411210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003192
Physical Location & Seq
Reverse (-)
33729054 .. 33730780
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411210.1

Sequence Viewer

Length: 336 bp
ATGGCGTCAAAGCTGTTGTTGATCACAATCTTCATCGTGAAATTAATAAGACCGAACTCTATAGGTTCAGTGAGGCGAAGATCTACCCTGGCAGAGGCATCAGATTTATCTGATTCGACTCTCAGGAGACCAGAACAAGTTGGTTGCACTGCAGAGATTGTTAGAACCCTATGGGAATTGTGGTGCGTACTAGAAGAATTGCTCTGGTGCTTGAGTCAGGAGTTGATTCTAGATATCTCCGTGGATCTTCTTTTCCACTTTAGTTTGACAAGCTGCAAGGATCAACTTTTGATTAGGTATTTTAATTTGCCTATTTCAATTGCTACACCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.65

Weight (kDa)

5.76

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 252, 288
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 318
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 13, 273
AluI AGCT 2 cut(s) 13, 273
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 2 cut(s) 252, 288
ApeKI GCWGC 1 cut(s) 273
AseI ATTAAT 1 cut(s) 44
BbvI GCAGC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 2 cut(s) 191, 230
BfmI CTRYAG 2 cut(s) 60, 150
BglII AGATCT 1 cut(s) 80
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 87, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 87, 240
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 121
Bso31I GGTCTC 1 cut(s) 121
Bsp143I GATC 4 cut(s) 21, 80, 244, 280
BspCNI CTCAG 1 cut(s) 135
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 2 cut(s) 252, 288
BspTNI GGTCTC 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 87, 240
BssMI GATC 4 cut(s) 21, 80, 244, 280
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 240
BstENI CCTNNNNNAGG 1 cut(s) 92
BstKTI GATC 4 cut(s) 24, 83, 247, 283
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 4 cut(s) 21, 80, 244, 280
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 2 cut(s) 60, 150
BstV1I GCAGC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 80, 244
BstYI RGATCY 2 cut(s) 80, 244
BtgI CCRYGG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 75, 147
Csp6I GTAC 1 cut(s) 188
CviJI RGCY 2 cut(s) 13, 273
CviKI_1 RGCY 2 cut(s) 13, 273
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 122
DpnI GATC 4 cut(s) 23, 82, 246, 282
DpnII GATC 4 cut(s) 21, 80, 244, 280
Eco31I GGTCTC 1 cut(s) 121
Eco32I GATATC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 235
FaiI YATR 2 cut(s) 62, 172
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 2 cut(s) 191, 230
GluI GCNGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 4 cut(s) 113, 118, 214, 226
Hpy188I TCNGA 2 cut(s) 103, 112
Hpy188III TCNNGA 4 cut(s) 37, 124, 218, 230
HpyCH4V TGCA 3 cut(s) 147, 152, 276
HpyF3I CTNAG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 4 cut(s) 21, 80, 244, 280
LpnPI CCDG 6 cut(s) 74, 101, 109, 144, 190, 203
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 1 cut(s) 107
MaeI CTAG 2 cut(s) 191, 230
MalI GATC 4 cut(s) 23, 82, 246, 282
MboI GATC 4 cut(s) 21, 80, 244, 280
MboII GAAGA 4 cut(s) 22, 90, 206, 239
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 2 cut(s) 80, 244
MluCI AATT 5 cut(s) 41, 176, 197, 304, 318
MlyI GAGTC 2 cut(s) 112, 223
MnlI CCTC 2 cut(s) 66, 88
MseI TTAA 2 cut(s) 44, 303
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 89
NdeII GATC 4 cut(s) 21, 80, 244, 280
PfeI GAWTC 2 cut(s) 113, 226
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 2 cut(s) 112, 222
PpsI GAGTC 2 cut(s) 112, 222
PshBI ATTAAT 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 2 cut(s) 80, 244
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 44, 303
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 4 cut(s) 21, 80, 244, 280
SchI GAGTC 2 cut(s) 112, 223
ScrFI CCNGG 1 cut(s) 89
SetI ASST 4 cut(s) 15, 67, 275, 299
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 2 cut(s) 60, 150
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 5 cut(s) 41, 176, 197, 304, 318
SspMI CTAG 2 cut(s) 191, 230
StyD4I CCNGG 1 cut(s) 87
TaqI TCGA 1 cut(s) 116
TaqII GACCGA 1 cut(s) 67
TasI AATT 5 cut(s) 41, 176, 197, 304, 318
TfiI GAWTC 2 cut(s) 113, 226
Tru1I TTAA 2 cut(s) 44, 303
Tru9I TTAA 2 cut(s) 44, 303
TscAI CASTG 2 cut(s) 75, 154
TseI GCWGC 1 cut(s) 273
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 2 cut(s) 75, 154
VspI ATTAAT 1 cut(s) 44
XagI CCTNNNNNAGG 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 2 cut(s) 191, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.