Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003192

Physical Location & Seq

Genomic Coordinates Reverse (-)

33318245 .. 33321364

Gene Structure 3120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTAAGAACGACGCGTCCTTGGGATCAGTGGGCGAGTTCTTGAAGCGGTGCCAGCAACTCGGCGAGCCTTCAACAATCGACGTCTCTAGAGATTGGTATCTGAAACTGGGTCTGCTTAACCGTGGCATTAAAGCTGTTGTTGATCACAATCTTCATTGTGAAATTAATAAGCTGGGACCGAACTCTGTAGGTTCAGTGGAGCGAAGATCTACCCTGGCAGAGGCATCAAATTTATCTGGTTCGACTCTCAGAGATGAAGGTGATCGCTGCATATTTGCTCGCTGTGTTGGGTATCAGTTCGTGCCATTGTCGAGTTACAGCGGGTCAGTTAAAGAGGACAGACCTGTGACTACTGAAGACACTTCTTGGAGATATGTGGCTCCTGAAGTTTACATAAATGAAGAATATGATACTAAAGTGGATGATTTTTCATTTTCCTTGATCTTGCAAGAGAAGTTTGAAGCAATCTGCCATGAGGTGGATGATATTGTGATACAGAATACAATTAAATATGTGGAAAACCAGATGCATTCAGTGGGTAAAAATGTGAAGAAACTCTGTTATGATTTACTTCCTCCTTTAGGGCATTCTGTTAAACATGTGGCTGAAGATGTGGTTATTGAAAAGAATGCCATTGTTAGTGAGGCTGGAAGAATGGTGTGGAGGAAGCTTTGGAATTGGGTCCTCTCTGAGACTTTGAAAAGGAAGGATTGGAACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.4

Weight (kDa)

5.74

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT2G16575
fragaria_vesca	FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g25880
malus_domestica	MD03G1240400.v1.1 MD11G1259700.v1.1
prunus_persica	Prupe.4G170200_v2.0.a1 Prupe.4G170200_v2.0.a1
pyrus_communis	pycom03g18560 pycom11g22940
rosa_chinensis	RchiOBHm_Chr5g0031461
rosa_laevigata	RLG00000002875 RLG00000029120 RLG00000033309
rosa_multiflora	Rmu_sc0000404.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431450 Rroxscaffold_1G00048870 Rroxscaffold_6G00411210
rosa_rugosa	Rorug05G0126000
rosa_samantha	Rh5AG218800 Rh5BG218100 Rh5CG241800 Rh5DG223400
rosa_wichuraiana	Rw5G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	49, 324
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	3 cut(s)	378, 408, 630
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	223, 481, 584
AflIII	ACRYGT	2 cut(s)	15, 601
AgsI	TTSAA	5 cut(s)	46, 75, 464, 626, 703
AjnI	CCWGG	1 cut(s)	216
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	3 cut(s)	137, 175, 673
AluI	AGCT	3 cut(s)	137, 175, 673
Alw26I	GTCTC	2 cut(s)	91, 689
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	232
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	179, 685
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	179, 685
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanI	GGYRCC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	218
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	91, 689
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	189
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	2 cut(s)	179, 685
BmgT120I	GGNCC	2 cut(s)	179, 685
BmiI	GGNNCC	4 cut(s)	53, 180, 384, 686
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	236, 519
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	366
BsaBI	GATNNNNATC	2 cut(s)	99, 150
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	21, 124, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 481, 584
Bse1I	ACTGG	1 cut(s)	114
Bse8I	GATNNNNATC	2 cut(s)	99, 150
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	21, 124, 216
BseGI	GGATG	2 cut(s)	430, 490
BseJI	GATNNNNATC	2 cut(s)	99, 150
BseLI	CCNNNNNNNGG	3 cut(s)	223, 481, 584
BseMII	CTCAG	2 cut(s)	265, 684
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	223, 481, 584
BsmAI	GTCTC	2 cut(s)	91, 689
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	3 cut(s)	532, 589, 637
Bsp143I	GATC	5 cut(s)	26, 145, 209, 265, 444
BspACI	CCGC	2 cut(s)	49, 324
BspCNI	CTCAG	2 cut(s)	264, 685
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	4 cut(s)	53, 180, 384, 686
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	21, 124, 216
BssMI	GATC	5 cut(s)	26, 145, 209, 265, 444
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	56, 68, 283
BstDEI	CTNAG	3 cut(s)	6, 251, 693
BstDSI	CCRYGG	1 cut(s)	124
BstENI	CCTNNNNNAGG	2 cut(s)	221, 582
BstF5I	GGATG	2 cut(s)	430, 490
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	5 cut(s)	29, 148, 212, 268, 447
BstMAI	GTCTC	2 cut(s)	91, 689
BstMBI	GATC	5 cut(s)	26, 145, 209, 265, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	430, 490
BtsIMutI	CAGTG	3 cut(s)	36, 204, 543
Cac8I	GCNNGC	3 cut(s)	56, 68, 283
Cfr13I	GGNCC	2 cut(s)	179, 685
CseI	GACGC	2 cut(s)	6, 23
CviAII	CATG	2 cut(s)	476, 602
CviJI	RGCY	8 cut(s)	5, 70, 137, 175, 383, 608, 650, 673
CviKI_1	RGCY	8 cut(s)	5, 70, 137, 175, 383, 608, 650, 673
DdeI	CTNAG	3 cut(s)	6, 251, 693
DpnI	GATC	5 cut(s)	28, 147, 211, 267, 446
DpnII	GATC	5 cut(s)	26, 145, 209, 265, 444
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	179, 685
Eco57I	CTGAAG	3 cut(s)	378, 408, 630
EcoNI	CCTNNNNNAGG	2 cut(s)	221, 582
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	2 cut(s)	479, 605
FaiI	YATR	8 cut(s)	275, 378, 398, 411, 477, 516, 567, 603
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	2 cut(s)	475, 601
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	437, 497
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	271
GsaI	CCCAGC	1 cut(s)	179
HgaI	GACGC	2 cut(s)	6, 23
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	479, 605
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	1 cut(s)	247
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	105, 254, 694
Hpy188III	TCNNGA	3 cut(s)	43, 90, 386
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	2 cut(s)	17, 86
HpyAV	CCTTC	3 cut(s)	81, 254, 703
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	273, 451, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	6, 251, 693
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	479, 605
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	5 cut(s)	26, 145, 209, 265, 444
LmnI	GCTCC	2 cut(s)	202, 388
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	2 cut(s)	236, 519
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	317, 349
MalI	GATC	5 cut(s)	28, 147, 211, 267, 446
MboI	GATC	5 cut(s)	26, 145, 209, 265, 444
MboII	GAAGA	7 cut(s)	146, 219, 371, 416, 565, 623, 666
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	4 cut(s)	165, 232, 507, 679
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	217, 331, 472, 588, 640, 660, 698
Mph1103I	ATGCAT	1 cut(s)	534
MseI	TTAA	6 cut(s)	120, 132, 168, 333, 510, 597
MspA1I	CMGCKG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	3 cut(s)	532, 589, 637
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	5 cut(s)	26, 145, 209, 265, 444
NlaIII	CATG	2 cut(s)	479, 605
NlaIV	GGNNCC	4 cut(s)	53, 180, 384, 686
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	605
PciI	ACATGT	1 cut(s)	601
PctI	GAATGC	3 cut(s)	532, 589, 637
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	685
PscI	ACATGT	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	4 cut(s)	53, 180, 384, 686
PspPI	GGNCC	2 cut(s)	179, 685
PspPPI	RGGWCCY	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	209
SaqAI	TTAA	6 cut(s)	120, 132, 168, 333, 510, 597
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	5 cut(s)	26, 145, 209, 265, 444
Sau96I	GGNCC	2 cut(s)	179, 685
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	8 cut(s)	87, 139, 177, 196, 265, 349, 483, 675
SfaNI	GCATC	2 cut(s)	236, 519
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	179, 685
Sse9I	AATT	4 cut(s)	165, 232, 507, 679
SsiI	CCGC	2 cut(s)	49, 324
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	81, 245, 314
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	4 cut(s)	165, 232, 507, 679
Tru1I	TTAA	6 cut(s)	120, 132, 168, 333, 510, 597
Tru9I	TTAA	6 cut(s)	120, 132, 168, 333, 510, 597
TscAI	CASTG	3 cut(s)	36, 204, 543
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	146, 273, 417, 423
TspRI	CASTG	3 cut(s)	36, 204, 543
Van91I	CCANNNNNTGG	1 cut(s)	481
VpaK11BI	GGWCC	2 cut(s)	179, 685
VspI	ATTAAT	1 cut(s)	168
XagI	CCTNNNNNAGG	2 cut(s)	221, 582
XapI	RAATTY	1 cut(s)	232
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	1 cut(s)	90
ZraI	GACGTC	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.