Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003192

Physical Location & Seq

Genomic Coordinates Reverse (-)

19527634 .. 19530137

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGATTTTAAAAAACTCAAAAGTATGAATTGGGTTGGAAACATTTACCAGAAATTTGAAACAATCCGCCAGGAGGTGGATGGTATTGTGAATCAGGACTCAATTAAATATGTTGAAAACCAGGTGCAGACTGTGGGTAAAAGTGTGAAGAAATTTTCTAGTACCGTCCAAGATTTACTTCCTATGGTTAGACAGAAATCTGCCATTAGTGTTAAGTCGAGGGAAAACGTAAAGGAAAATTCTTTGGATGTAACTGCAAACCAATCACCTGGAGAGCCCAATGTAAAGAATCCTGTGAGAAACCAGCTGAGTCTGGTCTCTACGGAAAATGACCTTGCAGACCAGCCTAATCCTCCAACAATGAATACTCTTGAGGTGTCGGAATTATCTGTGGGAAAGATCGATGAAGTTTTGGCAAATGAGAAGTCTTTAGTTGCAATTGAAAAGCAATCTCCTACAGAGCCCAATGTAATGACTCCAGTGAAAAACCAGCCGAGTCTTGTCTCTAGTAAATATCACCTTGCCGATCAACCTAGTTCTCCAACTTTAATAGATACTGTTGAGGTGCCAGAGTCTGACTTATCTGTGGGAAAGGTTGATGAAGTTTTGACAAGTGAAGGTCTTGTAGATGGGACGGAAAATAAATCACCTACAAATCTCAATGCAATGGATCGTGGGACAAACCAGCTGAGTGTTGTCTCTAGTAAGTATCACCTTCCAGATCAACCTAGTTCTCCAACTTCAATGGATACTCTTAAGGTGTCAGGGTCCGACTTATCTGTGGGAAACATTGAAGACTCATTTGATTCAACAGAAAAGCAATCGCCTATGGAGCCCAATGTAATGGATCATGTGACCGAACAGCTGAGTCTTGCTGGCAGGAAATATTACCTTGCAGATCAATCTAGTTCTCCTGCTGCAGTGGATACTCTCGAGGTCTTAGAGTCTGAGTTATCTGTGGAAAATACTGATGAAGTTTGGACAAATGAAAATTCTCTAGATGCAACTGAAAACCAAACACCTACACACCCCAGTGTAATTGATCCATACCAGCCGGGTCTTATCTTCAGTAAATATAACCTTGCAGGTCAACTTAGTTCTCCAGCTTCCTTGAATACTCTTGAGGTATTGGAGTCTGACTTGTCGGTTCCAGAGTTTGATGACATTTCACCTGAATCAGTAGCAGAAGGCACTCCCAGAACTGCAGAGTTCATGCCTCTGACAGTACCATCTAGAAAGAAGCAAGTTCAAATCTGCGACTCTGTTCAGTATGATGCTCTTAAGCCGTCTTTAGATATTGGAAGTTCAGATGAATCAAGTAGTGATTTTTCTCGCTCTTCTATGGAAACCATTGATTTGCATGATAAGGAGAGCTGTGTCATTGTAGACGATAGCGTACTGCACACTGTCTCTAGCAGGGCAAGAAAACAAAGATCATACAAGAAAAGAATCCAGGATGCTTTTACATCAAAGAAGAGGTTGGCAAAGGAGTACGAACAGCTAGCAATTTGGTTCGGAGACAGTCATATAGAAACCAGCCAACAAACACTCTCTAACGTGAAAAGTTCGGAAACTGATGATGCCTGTGATTCTGAATGGGAGCTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

537

Amino Acids

59.06

Weight (kDa)

4.54

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT2G16575
fragaria_vesca	FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g25880
malus_domestica	MD03G1240400.v1.1 MD11G1259700.v1.1
prunus_persica	Prupe.4G170200_v2.0.a1 Prupe.4G170200_v2.0.a1
pyrus_communis	pycom03g18560 pycom11g22940
rosa_chinensis	RchiOBHm_Chr5g0031461
rosa_laevigata	RLG00000002875 RLG00000029120 RLG00000033309
rosa_multiflora	Rmu_sc0000404.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431450 Rroxscaffold_1G00048870 Rroxscaffold_6G00411210
rosa_rugosa	Rorug05G0126000
rosa_samantha	Rh5AG218800 Rh5BG218100 Rh5CG241800 Rh5DG223400
rosa_wichuraiana	Rw5G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1076
AccB1I	GGYRCC	1 cut(s)	565
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	1386
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	3 cut(s)	678, 855, 1037
AcsI	RAATTY	4 cut(s)	53, 152, 238, 991
AcuI	CTGAAG	1 cut(s)	1051
AfaI	GTAC	4 cut(s)	163, 1227, 1398, 1493
AfiI	CCNNNNNNNGG	2 cut(s)	73, 76
AflII	CTTAAG	2 cut(s)	755, 1280
AgsI	TTSAA	8 cut(s)	59, 116, 443, 744, 794, 810, 1114, 1250
AjnI	CCWGG	4 cut(s)	69, 120, 268, 1452
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AleI	CACNNNNGTG	1 cut(s)	1032
AluBI	AGCT	7 cut(s)	307, 688, 865, 1106, 1374, 1501, 1603
AluI	AGCT	7 cut(s)	307, 688, 865, 1106, 1374, 1501, 1603
Alw21I	GWGCWC	1 cut(s)	1605
Alw26I	GTCTC	5 cut(s)	322, 508, 703, 1414, 1512
AlwI	GGATC	3 cut(s)	678, 855, 1037
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	932
ApeKI	GCWGC	1 cut(s)	917
ApoI	RAATTY	4 cut(s)	53, 152, 238, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AspS9I	GGNCC	1 cut(s)	768
AsuC2I	CCSGG	1 cut(s)	1056
AsuHPI	GGTGA	5 cut(s)	258, 509, 639, 704, 1161
AsuNHI	GCTAGC	1 cut(s)	1501
AvaI	CYCGRG	1 cut(s)	932
AvaII	GGWCC	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	4 cut(s)	279, 465, 837, 1605
BbsI	GAAGAC	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	1605
BbvI	GCAGC	1 cut(s)	904
BccI	CCATC	3 cut(s)	74, 623, 1237
BceAI	ACGGC	1 cut(s)	1270
BciT130I	CCWGG	4 cut(s)	71, 122, 270, 1454
BciVI	GTATCC	2 cut(s)	742, 919
BcnI	CCSGG	1 cut(s)	1056
BcoDI	GTCTC	5 cut(s)	322, 508, 703, 1414, 1512
BfmI	CTRYAG	3 cut(s)	456, 918, 1203
BfrI	CTTAAG	2 cut(s)	755, 1280
BfuAI	ACCTGC	1 cut(s)	1076
BfuI	GTATCC	2 cut(s)	742, 919
BisI	GCNGC	1 cut(s)	918
BlsI	GCNGC	1 cut(s)	919
Bme1390I	CCNGG	5 cut(s)	71, 122, 270, 1056, 1454
Bme18I	GGWCC	1 cut(s)	768
BmeT110I	CYCGRG	1 cut(s)	932
BmgT120I	GGNCC	1 cut(s)	768
BmiI	GGNNCC	4 cut(s)	567, 769, 834, 1149
BmrFI	CCNGG	5 cut(s)	71, 122, 270, 1056, 1454
BmrI	ACTGGG	1 cut(s)	1026
BmsI	GCATC	4 cut(s)	991, 1264, 1447, 1570
BmtI	GCTAGC	1 cut(s)	1505
BmuI	ACTGGG	1 cut(s)	1026
BpiI	GAAGAC	1 cut(s)	801
BpmI	CTGGAG	3 cut(s)	291, 462, 1086
BpuEI	CTTGAG	2 cut(s)	392, 1142
BpuMI	CCSGG	1 cut(s)	1056
Bsa29I	ATCGAT	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	322
BsaXI	ACNNNNNCTCC	1 cut(s)	1592
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 76
Bse1I	ACTGG	2 cut(s)	479, 1032
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	4 cut(s)	71, 122, 270, 1454
BseCI	ATCGAT	1 cut(s)	402
BseGI	GGATG	3 cut(s)	85, 253, 1462
BseLI	CCNNNNNNNGG	2 cut(s)	73, 76
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	4 cut(s)	299, 680, 857, 939
BseNI	ACTGG	2 cut(s)	479, 1032
BseXI	GCAGC	1 cut(s)	904
BsgI	GTGCAG	2 cut(s)	146, 1385
BshNI	GGYRCC	1 cut(s)	565
BshVI	ATCGAT	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	1605
BsiHKCI	CYCGRG	1 cut(s)	932
BsiSI	CCGG	1 cut(s)	1055
BslFI	GGGAC	2 cut(s)	646, 691
BslI	CCNNNNNNNGG	2 cut(s)	73, 76
BsmAI	GTCTC	5 cut(s)	322, 508, 703, 1414, 1512
BsmFI	GGGAC	2 cut(s)	646, 691
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	932
Bsp1286I	GDGCHC	4 cut(s)	279, 465, 837, 1605
Bsp143I	GATC	8 cut(s)	399, 526, 670, 721, 847, 898, 1042, 1433
BspACI	CCGC	1 cut(s)	67
BspCNI	CTCAG	4 cut(s)	300, 681, 858, 940
BspDI	ATCGAT	1 cut(s)	402
BspLI	GGNNCC	4 cut(s)	567, 769, 834, 1149
BspMAI	CTGCAG	2 cut(s)	922, 1207
BspMI	ACCTGC	1 cut(s)	1076
BspOI	GCTAGC	1 cut(s)	1505
BspPI	GGATC	3 cut(s)	678, 855, 1037
BspQI	GCTCTTC	1 cut(s)	1342
BspT107I	GGYRCC	1 cut(s)	565
BspTI	CTTAAG	2 cut(s)	755, 1280
BspTNI	GGTCTC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	479, 1032
BssMI	GATC	8 cut(s)	399, 526, 670, 721, 847, 898, 1042, 1433
Bst2UI	CCWGG	4 cut(s)	71, 122, 270, 1454
Bst4CI	ACNGT	6 cut(s)	133, 166, 559, 1225, 1408, 1523
Bst6I	CTCTTC	2 cut(s)	1342, 1469
BstAFI	CTTAAG	2 cut(s)	755, 1280
BstC8I	GCNNGC	2 cut(s)	877, 1503
BstDEI	CTNAG	6 cut(s)	308, 689, 866, 940, 948, 1094
BstF5I	GGATG	3 cut(s)	85, 253, 1462
BstKTI	GATC	8 cut(s)	402, 529, 673, 724, 850, 901, 1045, 1436
BstMAI	GTCTC	5 cut(s)	322, 508, 703, 1414, 1512
BstMBI	GATC	8 cut(s)	399, 526, 670, 721, 847, 898, 1042, 1433
BstMWI	GCNNNNNNNGC	1 cut(s)	832
BstNI	CCWGG	4 cut(s)	71, 122, 270, 1454
BstSCI	CCNGG	5 cut(s)	69, 120, 268, 1054, 1452
BstSFI	CTRYAG	3 cut(s)	456, 918, 1203
BstV1I	GCAGC	1 cut(s)	904
BstV2I	GAAGAC	1 cut(s)	801
BstXI	CCANNNNNNTGG	2 cut(s)	269, 844
Bsu15I	ATCGAT	1 cut(s)	402
BsuI	GTATCC	2 cut(s)	742, 919
BsuTUI	ATCGAT	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	85, 253, 1462
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	4 cut(s)	486, 927, 1039, 1404
BveI	ACCTGC	1 cut(s)	1076
Cac8I	GCNNGC	2 cut(s)	877, 1503
CaiI	CAGNNNCTG	1 cut(s)	575
Cfr13I	GGNCC	1 cut(s)	768
ClaI	ATCGAT	1 cut(s)	402
CsiI	ACCWGGT	1 cut(s)	120
Csp6I	GTAC	4 cut(s)	162, 1226, 1397, 1492
CviAII	CATG	3 cut(s)	851, 1213, 1361
CviQI	GTAC	4 cut(s)	162, 1226, 1397, 1492
DdeI	CTNAG	6 cut(s)	308, 689, 866, 940, 948, 1094
DpnI	GATC	8 cut(s)	401, 528, 672, 723, 849, 900, 1044, 1435
DpnII	GATC	8 cut(s)	399, 526, 670, 721, 847, 898, 1042, 1433
DraI	TTTAAA	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	1342, 1469
EarI	CTCTTC	2 cut(s)	1342, 1469
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	1603
Eco24I	GRGCYC	4 cut(s)	279, 465, 837, 1605
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	768
Eco53kI	GAGCTC	1 cut(s)	1603
Eco57I	CTGAAG	1 cut(s)	1051
Eco88I	CYCGRG	1 cut(s)	932
EcoICRI	GAGCTC	1 cut(s)	1603
EcoRII	CCWGG	4 cut(s)	69, 120, 268, 1452
EcoT38I	GRGCYC	4 cut(s)	279, 465, 837, 1605
FaeI	CATG	3 cut(s)	854, 1216, 1364
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	2 cut(s)	646, 691
FatI	CATG	3 cut(s)	850, 1212, 1360
FblI	GTMKAC	1 cut(s)	1386
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	3 cut(s)	92, 260, 1469
FriOI	GRGCYC	4 cut(s)	279, 465, 837, 1605
Fsp4HI	GCNGC	1 cut(s)	918
GluI	GCNGC	1 cut(s)	918
GsuI	CTGGAG	3 cut(s)	291, 462, 1086
HapII	CCGG	1 cut(s)	1055
Hin1II	CATG	3 cut(s)	854, 1216, 1364
HincII	GTYRAC	1 cut(s)	1091
HindII	GTYRAC	1 cut(s)	1091
HpaII	CCGG	1 cut(s)	1055
HphI	GGTGA	5 cut(s)	258, 509, 639, 704, 1161
Hpy166II	GTNNAC	2 cut(s)	1091, 1387
Hpy188III	TCNNGA	8 cut(s)	95, 371, 719, 932, 998, 1121, 1151, 1233
Hpy8I	GTNNAC	2 cut(s)	1091, 1387
HpyAV	CCTTC	3 cut(s)	611, 725, 1181
HpyCH4III	ACNGT	6 cut(s)	133, 166, 559, 1225, 1408, 1523
HpyCH4IV	ACGT	2 cut(s)	228, 1557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	832
HpyF3I	CTNAG	6 cut(s)	308, 689, 866, 940, 948, 1094
HpySE526I	ACGT	2 cut(s)	228, 1557
Hsp92II	CATG	3 cut(s)	854, 1216, 1364
Kzo9I	GATC	8 cut(s)	399, 526, 670, 721, 847, 898, 1042, 1433
LguI	GCTCTTC	1 cut(s)	1342
LmnI	GCTCC	3 cut(s)	832, 1600, 1608
Lsp1109I	GCAGC	1 cut(s)	904
LweI	GCATC	4 cut(s)	991, 1264, 1447, 1570
MabI	ACCWGGT	1 cut(s)	120
MaeII	ACGT	2 cut(s)	228, 1557
MaeIII	GTNAC	2 cut(s)	250, 853
MalI	GATC	8 cut(s)	401, 528, 672, 723, 849, 900, 1044, 1435
MboI	GATC	8 cut(s)	399, 526, 670, 721, 847, 898, 1042, 1433
MboII	GAAGA	5 cut(s)	160, 806, 1057, 1329, 1486
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	4 cut(s)	279, 465, 837, 1605
MmeI	TCCRAC	6 cut(s)	16, 360, 380, 566, 761, 795
MnlI	CCTC	9 cut(s)	67, 213, 363, 367, 556, 928, 1117, 1227, 1470
MseI	TTAA	6 cut(s)	9, 105, 213, 548, 756, 1281
MslI	CAYNNNNRTG	1 cut(s)	1032
MspA1I	CMGCKG	3 cut(s)	307, 688, 865
MspCI	CTTAAG	2 cut(s)	755, 1280
MspI	CCGG	1 cut(s)	1055
MspR9I	CCNGG	5 cut(s)	71, 122, 270, 1056, 1454
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	4 cut(s)	71, 122, 270, 1454
MwoI	GCNNNNNNNGC	1 cut(s)	832
NciI	CCSGG	1 cut(s)	1056
NdeII	GATC	8 cut(s)	399, 526, 670, 721, 847, 898, 1042, 1433
NheI	GCTAGC	1 cut(s)	1501
NlaIII	CATG	3 cut(s)	854, 1216, 1364
NlaIV	GGNNCC	4 cut(s)	567, 769, 834, 1149
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	853
OliI	CACNNNNGTG	1 cut(s)	1032
PaeR7I	CTCGAG	1 cut(s)	932
PciSI	GCTCTTC	1 cut(s)	1342
PfeI	GAWTC	7 cut(s)	91, 289, 806, 1175, 1313, 1449, 1589
PflMI	CCANNNNNTGG	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	1452
PkrI	GCNGC	1 cut(s)	919
Psp124BI	GAGCTC	1 cut(s)	1605
Psp6I	CCWGG	4 cut(s)	69, 120, 268, 1452
PspGI	CCWGG	4 cut(s)	69, 120, 268, 1452
PspN4I	GGNNCC	4 cut(s)	567, 769, 834, 1149
PspPI	GGNCC	1 cut(s)	768
PstI	CTGCAG	2 cut(s)	922, 1207
PstNI	CAGNNNCTG	1 cut(s)	575
PvuII	CAGCTG	3 cut(s)	307, 688, 865
RsaI	GTAC	4 cut(s)	163, 1227, 1398, 1493
RsaNI	GTAC	4 cut(s)	162, 1226, 1397, 1492
RseI	CAYNNNNRTG	1 cut(s)	1032
SacI	GAGCTC	1 cut(s)	1605
SapI	GCTCTTC	1 cut(s)	1342
SaqAI	TTAA	6 cut(s)	9, 105, 213, 548, 756, 1281
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	8 cut(s)	399, 526, 670, 721, 847, 898, 1042, 1433
Sau96I	GGNCC	1 cut(s)	768
ScrFI	CCNGG	5 cut(s)	71, 122, 270, 1056, 1454
SduI	GDGCHC	4 cut(s)	279, 465, 837, 1605
SexAI	ACCWGGT	1 cut(s)	120
SfaNI	GCATC	4 cut(s)	991, 1264, 1447, 1570
SfcI	CTRYAG	3 cut(s)	456, 918, 1203
Sfr274I	CTCGAG	1 cut(s)	932
SinI	GGWCC	1 cut(s)	768
SlaI	CTCGAG	1 cut(s)	932
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SmlI	CTYRAG	5 cut(s)	371, 755, 932, 1121, 1280
SmoI	CTYRAG	5 cut(s)	371, 755, 932, 1121, 1280
SsiI	CCGC	1 cut(s)	67
SspI	AATATT	1 cut(s)	887
SstI	GAGCTC	1 cut(s)	1605
StyD4I	CCNGG	5 cut(s)	69, 120, 268, 1054, 1452
TaaI	ACNGT	6 cut(s)	133, 166, 559, 1225, 1408, 1523
TaiI	ACGT	2 cut(s)	231, 1560
TaqI	TCGA	3 cut(s)	218, 402, 933
TaqII	GACCGA	1 cut(s)	872
TfiI	GAWTC	7 cut(s)	91, 289, 806, 1175, 1313, 1449, 1589
Tru1I	TTAA	6 cut(s)	9, 105, 213, 548, 756, 1281
Tru9I	TTAA	6 cut(s)	9, 105, 213, 548, 756, 1281
TscAI	CASTG	4 cut(s)	486, 927, 1039, 1411
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	1 cut(s)	917
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	8 cut(s)	41, 377, 420, 615, 987, 1002, 1201, 1326
TspGWI	ACGGA	2 cut(s)	338, 650
TspRI	CASTG	4 cut(s)	486, 927, 1039, 1411
Van91I	CCANNNNNTGG	1 cut(s)	76
Vha464I	CTTAAG	2 cut(s)	755, 1280
VpaK11BI	GGWCC	1 cut(s)	768
XapI	RAATTY	4 cut(s)	53, 152, 238, 991
XbaI	TCTAGA	2 cut(s)	997, 1232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	932
XmiI	GTMKAC	1 cut(s)	1386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.