Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003192

Physical Location & Seq

Genomic Coordinates Reverse (-)

11187448 .. 11191712

Gene Structure 4265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0126000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAGGACGCCGTACGACATCGCACTGCTATCAACGATTACCTGAAGAGGTTACTCCAGCATAAGGAGCTCCAAGTCCGCGCAGTGGGTTTCTGTGTGAATTGGGAAATTTTAGATGCTATGAGGAATTTGTTTGGGTCTGAATTGCATGTTTCGGGTTTTGCAGATTGGAGATGCAATGGTAAGGGCTACGTGGCGTTCCAGAATTACATTCGGAGGCCGACGAATTGGGAGAAGGATAGTCTGCGGACTCTGAGCCTCCAGACCACTCCGGGAAACAGGCTGCTTGATGCATCAGTGGGTGATGGATTCAAACTCCGAGTCCACTCTCACTTTTGTGTGATGTCGAGAGCTGGACTCCTGGCAGGGTATGTGCAATGTAGCCTCGGTTTTGGTTTTCAAGTTTCTTTAATCTTCGATGTGCATAATGGCAGTCAACCTTCATCTCGTAGAAGTTTTGGCTCGAGTACTAGTGATAATGACCGCCTGCGTCAACGGGGTGAACAACCTACATACTCTTTTGTAGGAATGCATTGCATCTTTGATCAGTGCAGAGCCTCGGTTACTGTTTTGAAGTTTGGGCACATGAGCTCAGATCTGCTTGCGTATGGAGCATCAGATGGAACCTTGACAGTATGCACTGTCTCTGATCCTCCTTCAATTCTCAAGCATCTGAATGGTCACTCCAAAGATGTTACAGTGGATGCATATTTCTTTGGTAAGATTTTGTTTCCTGCATCATCATCTCCACTTGGTTATGGGACCAACGCTATTTTCCCGGTCTTTGTTCTAAACTCCATGTCTTGTTTATTTTCAAACTTTGATTTCTCGTCAAACAATCAGTACATTGCATCCTCATCGTTGGATAAAACTGTGAGAGTATGGGAGATTTCAAAAGGCCTATGCATAAGAGTAATATATGGAGTTTCTCCACAACTGTGTATTCGTTTTCACCCTGTAAATAACAACTTCCTTTCAGTTGGCAATGCAGACAAAGAAATTACGGTAAGGGTTGCATACCTATGCTTGTTGTTTCTTCAGAAAGGAGAACATGAGATTTTTTGGTTTAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

358

Amino Acids

40.14

Weight (kDa)

8.83

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	272 - 335	1.5e-07	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	273 - 336	8.1e-06	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	278 - 335	1.1e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT2G16575
fragaria_vesca	FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g25880
malus_domestica	MD03G1240400.v1.1 MD11G1259700.v1.1
prunus_persica	Prupe.4G170200_v2.0.a1 Prupe.4G170200_v2.0.a1
pyrus_communis	pycom03g18560 pycom11g22940
rosa_chinensis	RchiOBHm_Chr5g0031461
rosa_laevigata	RLG00000002875 RLG00000029120 RLG00000033309
rosa_multiflora	Rmu_sc0000404.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431450 Rroxscaffold_1G00048870 Rroxscaffold_6G00411210
rosa_rugosa	Rorug05G0126000
rosa_samantha	Rh5AG218800 Rh5BG218100 Rh5CG241800 Rh5DG223400
rosa_wichuraiana	Rw5G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	3 cut(s)	79, 247, 484
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	2 cut(s)	108, 127
AcuI	CTGAAG	2 cut(s)	65, 1022
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	3 cut(s)	15, 469, 845
AfiI	CCNNNNNNNGG	2 cut(s)	64, 85
AgsI	TTSAA	6 cut(s)	313, 401, 574, 660, 816, 894
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AleI	CACNNNNGTG	2 cut(s)	336, 937
AluBI	AGCT	3 cut(s)	70, 353, 591
AluI	AGCT	3 cut(s)	70, 353, 591
Alw21I	GWGCWC	2 cut(s)	72, 593
Alw26I	GTCTC	1 cut(s)	649
AlwI	GGATC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	2 cut(s)	218, 898
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	2 cut(s)	108, 127
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	762
AsuC2I	CCSGG	2 cut(s)	273, 779
AsuHPI	GGTGA	3 cut(s)	314, 512, 944
AvaI	CYCGRG	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	762
BaeGI	GKGCMC	1 cut(s)	585
BanII	GRGCYC	2 cut(s)	72, 593
Bbv12I	GWGCWC	2 cut(s)	72, 593
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	2 cut(s)	299, 614
BcgI	CGANNNNNNTGC	2 cut(s)	840, 874
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	2 cut(s)	273, 779
BcoDI	GTCTC	1 cut(s)	649
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	1 cut(s)	471
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	3 cut(s)	273, 362, 779
Bme18I	GGWCC	1 cut(s)	762
BmeT110I	CYCGRG	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	762
BmiI	GGNNCC	2 cut(s)	625, 763
BmrFI	CCNGG	3 cut(s)	273, 362, 779
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BpmI	CTGGAG	2 cut(s)	41, 245
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	2 cut(s)	273, 779
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	385, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 85
Bse3DI	GCAATG	5 cut(s)	184, 383, 532, 846, 991
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	385, 558
BseGI	GGATG	2 cut(s)	709, 851
BseLI	CCNNNNNNNGG	2 cut(s)	64, 85
BseMI	GCAATG	5 cut(s)	184, 383, 532, 846, 991
BseMII	CTCAG	2 cut(s)	245, 606
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	270
BsgI	GTGCAG	1 cut(s)	571
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	220, 900
BsiHKAI	GWGCWC	2 cut(s)	72, 593
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	272, 779
BsiWI	CGTACG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	2 cut(s)	64, 85
BsmAI	GTCTC	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	775
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	2 cut(s)	220, 900
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	3 cut(s)	72, 585, 593
Bsp143I	GATC	3 cut(s)	544, 595, 649
BspACI	CCGC	3 cut(s)	79, 247, 484
BspANI	GGCC	2 cut(s)	220, 900
BspCNI	CTCAG	2 cut(s)	246, 605
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	625, 763
BspPI	GGATC	1 cut(s)	644
BsrDI	GCAATG	5 cut(s)	184, 383, 532, 846, 991
BssECI	CCNNGG	2 cut(s)	385, 558
BssMI	GATC	3 cut(s)	544, 595, 649
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	7 cut(s)	568, 634, 643, 700, 874, 939, 1006
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	488, 603
BstDEI	CTNAG	2 cut(s)	254, 592
BstF5I	GGATG	2 cut(s)	709, 851
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	3 cut(s)	547, 598, 652
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	3 cut(s)	544, 595, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 611
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	3 cut(s)	271, 360, 777
BstSLI	GKGCMC	1 cut(s)	585
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	220, 900
BtgZI	GCGATG	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	709, 851
BtsI	GCAGTG	2 cut(s)	24, 90
BtsIMutI	CAGTG	6 cut(s)	24, 90, 303, 554, 639, 705
Cac8I	GCNNGC	2 cut(s)	488, 603
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	762
CseI	GACGC	2 cut(s)	17, 479
Csp6I	GTAC	3 cut(s)	14, 468, 844
CviAII	CATG	5 cut(s)	149, 586, 799, 1052, 1074
CviQI	GTAC	3 cut(s)	14, 468, 844
DdeI	CTNAG	2 cut(s)	254, 592
DpnI	GATC	3 cut(s)	546, 597, 651
DpnII	GATC	3 cut(s)	544, 595, 649
DraI	TTTAAA	1 cut(s)	1069
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	2 cut(s)	70, 591
Eco147I	AGGCCT	1 cut(s)	900
Eco24I	GRGCYC	2 cut(s)	72, 593
Eco47I	GGWCC	1 cut(s)	762
Eco53kI	GAGCTC	2 cut(s)	70, 591
Eco57I	CTGAAG	2 cut(s)	65, 1022
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	2 cut(s)	70, 591
EcoRII	CCWGG	1 cut(s)	360
EcoT22I	ATGCAT	4 cut(s)	295, 534, 709, 908
EcoT38I	GRGCYC	2 cut(s)	72, 593
FaeI	CATG	5 cut(s)	152, 589, 802, 1055, 1077
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	5 cut(s)	148, 585, 798, 1051, 1073
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	2 cut(s)	716, 838
FriOI	GRGCYC	2 cut(s)	72, 593
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	284
GsuI	CTGGAG	2 cut(s)	41, 245
HaeIII	GGCC	2 cut(s)	220, 900
HapII	CCGG	2 cut(s)	272, 779
HgaI	GACGC	2 cut(s)	17, 479
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	152, 589, 802, 1055, 1077
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	2 cut(s)	437, 494
HindII	GTYRAC	2 cut(s)	437, 494
HinfI	GANTC	4 cut(s)	250, 309, 321, 357
HpaII	CCGG	2 cut(s)	272, 779
HphI	GGTGA	3 cut(s)	314, 512, 944
Hpy166II	GTNNAC	4 cut(s)	325, 437, 494, 503
Hpy188I	TCNGA	9 cut(s)	142, 216, 255, 320, 595, 619, 649, 675, 1041
Hpy188III	TCNNGA	3 cut(s)	202, 262, 348
Hpy8I	GTNNAC	4 cut(s)	325, 437, 494, 503
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	229, 450, 666
HpyCH4III	ACNGT	7 cut(s)	568, 634, 643, 700, 874, 939, 1006
HpyCH4IV	ACGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 611
HpyF3I	CTNAG	2 cut(s)	254, 592
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	152, 589, 802, 1055, 1077
HspAI	GCGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	544, 595, 649
LmnI	GCTCC	3 cut(s)	67, 75, 611
Lsp1109I	GCAGC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	4 cut(s)	51, 562, 680, 694
MalI	GATC	3 cut(s)	546, 597, 651
MboI	GATC	3 cut(s)	544, 595, 649
MboII	GAAGA	3 cut(s)	58, 406, 1028
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	3 cut(s)	72, 585, 593
MluCI	AATT	8 cut(s)	100, 108, 127, 143, 205, 226, 660, 999
MlyI	GAGTC	3 cut(s)	244, 330, 351
MmeI	TCCRAC	1 cut(s)	843
MnlI	CCTC	8 cut(s)	42, 117, 210, 269, 395, 568, 663, 865
Mph1103I	ATGCAT	4 cut(s)	295, 534, 709, 908
MseI	TTAA	2 cut(s)	410, 1068
MslI	CAYNNNNRTG	4 cut(s)	336, 675, 937, 1021
MspI	CCGG	2 cut(s)	272, 779
MspR9I	CCNGG	3 cut(s)	273, 362, 779
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	67, 611
NciI	CCSGG	2 cut(s)	273, 779
NdeII	GATC	3 cut(s)	544, 595, 649
NlaIII	CATG	5 cut(s)	152, 589, 802, 1055, 1077
NlaIV	GGNNCC	2 cut(s)	625, 763
NmuCI	GTSAC	1 cut(s)	680
NsiI	ATGCAT	4 cut(s)	295, 534, 709, 908
NspI	RCATGY	1 cut(s)	152
OliI	CACNNNNGTG	2 cut(s)	336, 937
PaeR7I	CTCGAG	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	900
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	309
Pfl23II	CGTACG	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	3 cut(s)	244, 329, 351
PpsI	GAGTC	3 cut(s)	244, 329, 351
Ppu21I	YACGTR	1 cut(s)	193
Psp124BI	GAGCTC	2 cut(s)	72, 593
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspLI	CGTACG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	625, 763
PspPI	GGNCC	1 cut(s)	762
PspXI	VCTCGAGB	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	3 cut(s)	15, 469, 845
RsaNI	GTAC	3 cut(s)	14, 468, 844
RseI	CAYNNNNRTG	4 cut(s)	336, 675, 937, 1021
SacI	GAGCTC	2 cut(s)	72, 593
SaqAI	TTAA	2 cut(s)	410, 1068
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	3 cut(s)	544, 595, 649
Sau96I	GGNCC	1 cut(s)	762
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	3 cut(s)	244, 330, 351
ScrFI	CCNGG	3 cut(s)	273, 362, 779
SduI	GDGCHC	3 cut(s)	72, 585, 593
Sfr274I	CTCGAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	762
SlaI	CTCGAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	4 cut(s)	336, 675, 937, 1021
SmlI	CTYRAG	2 cut(s)	463, 665
SmoI	CTYRAG	2 cut(s)	463, 665
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	8 cut(s)	100, 108, 127, 143, 205, 226, 660, 999
SseBI	AGGCCT	1 cut(s)	900
SsiI	CCGC	3 cut(s)	79, 247, 484
SspMI	CTAG	1 cut(s)	471
SstI	GAGCTC	2 cut(s)	72, 593
StuI	AGGCCT	1 cut(s)	900
StyD4I	CCNGG	3 cut(s)	271, 360, 777
TaaI	ACNGT	7 cut(s)	568, 634, 643, 700, 874, 939, 1006
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	3 cut(s)	347, 417, 464
TasI	AATT	8 cut(s)	100, 108, 127, 143, 205, 226, 660, 999
TatI	WGTACW	2 cut(s)	467, 843
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	410, 1068
Tru9I	TTAA	2 cut(s)	410, 1068
TscAI	CASTG	6 cut(s)	31, 90, 303, 554, 646, 705
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	1 cut(s)	432
TspRI	CASTG	6 cut(s)	31, 90, 303, 554, 646, 705
VpaK11BI	GGWCC	1 cut(s)	762
XapI	RAATTY	2 cut(s)	108, 127
XceI	RCATGY	1 cut(s)	152
XhoI	CTCGAG	1 cut(s)	463
XspI	CTAG	1 cut(s)	471
ZrmI	AGTACT	1 cut(s)	469
Zsp2I	ATGCAT	4 cut(s)	295, 534, 709, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.