AT1G18760

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011016
Physical Location & Seq
Reverse (-)
6471150 .. 6471824
675 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18760.1

Sequence Viewer

Length: 675 bp
ATGAGAATAGATTTCTACCACAATATCATACGCAATCATCAACCAGAAAACGCTGGCACACTCTCAGTGAATGCAAATATCGACGGTTACGACTACACATTTACTGATACATCGTTTATCGAAGAATTCCTCAACGAAGAAAACAATCAGTTTCCCACCAAACAAAAATTACATTATTTCTTGGAGGATTCAGAGCTAATTAACGATTACGATATGGAATGGGGTACTGCGATATTTGAGCTAATTTTCTATGTTGTTGCAGTAACTAATCCCGCAAGAGGTGACTATTCTCCGGGGGATGATTTGCTTGTGTCCTTGCTTATTTTTCCTAATGATGAACCGATCGAAGAAGAGTATGAGATTGAAGAAGAGGATTTGAGTGAAGAAGAGGATCAAATTGAAGAAGCGGTTCGAGCCTCCTTGGAGGAGACCAATAATATCAGTTTGAGACCCGCAAACAAGCTCGTGGTCAATTCTTTAGCCAGGAAAATATACAAGAAGACCACTAGTTCTACTGAAAGGTGCACAATTTGTTTGGAAGAGTTTAACGATGGAACAAAAGTTATGACTTTACCTTGCGGACATGAATTTGACGATGAGTGTGTCCTAACGTGGTTTGAGACTAATCATGACTGTCCACTGTGTCGTTTCAAGTTGCCATGTGAAGATCAATGA

Protein Analysis

224

Amino Acids

26.04

Weight (kDa)

4.18

Isoelectric Point (pI)

64.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 172 - 216 9e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 174 - 216 4.5e-15 Ring finger domain
zf-C3HC4_2 PF13923 174 - 215 2.7e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 175 - 202 9.9e-10 RING-like zinc finger
zf-C3HC4 PF00097 175 - 215 4.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 175 - 213 4.1e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011016)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18760 AT1G18770 AT1G18780 AT1G21960 AT2G29840 AT3G13228
fragaria_vesca FvH4_2g27040
malus_domestica MD08G1162100.v1.1
prunus_persica Prupe.1G495200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295911
rosa_laevigata RLG00000011757
rosa_multiflora Rmu_sc0003139.1_g000008
rosa_roxburghii Rroxscaffold_7G00172060
rosa_rugosa Rorug06G0255000 Rorug06G0255000
rosa_samantha Rh6AG368800 Rh6BG376500 Rh6CG382700 Rh6DG369300
rosa_wichuraiana Rw6G032160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 273, 407, 453, 579
AclWI GGATC 1 cut(s) 399
AcsI RAATTY 2 cut(s) 125, 587
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 3 cut(s) 365, 401, 652
AhlI ACTAGT 1 cut(s) 506
AjnI CCWGG 1 cut(s) 482
AluBI AGCT 3 cut(s) 196, 241, 463
AluI AGCT 3 cut(s) 196, 241, 463
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 3 cut(s) 422, 442, 614
Alw44I GTGCAC 1 cut(s) 523
AlwI GGATC 1 cut(s) 399
ApaLI GTGCAC 1 cut(s) 523
ApoI RAATTY 2 cut(s) 125, 587
Asp700I GAANNNNTTC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 527
BauI CACGAG 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 527
BccI CCATC 1 cut(s) 545
BciT130I CCWGG 1 cut(s) 484
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 3 cut(s) 422, 442, 614
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 1 cut(s) 507
Bme1390I CCNGG 2 cut(s) 294, 484
BmrFI CCNGG 2 cut(s) 294, 484
BpiI GAAGAC 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 294
BsaI GGTCTC 2 cut(s) 422, 442
BsaJI CCNNGG 2 cut(s) 293, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 293, 420
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 527
Bsh1285I CGRYCG 1 cut(s) 345
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 527
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 3 cut(s) 422, 442, 614
BsmI GAATGC 1 cut(s) 76
Bso31I GGTCTC 2 cut(s) 422, 442
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 3 cut(s) 342, 391, 667
BspACI CCGC 4 cut(s) 273, 407, 453, 579
BspCNI CTCAG 1 cut(s) 77
BspHI TCATGA 1 cut(s) 628
BspPI GGATC 1 cut(s) 399
BspTNI GGTCTC 2 cut(s) 422, 442
BssECI CCNNGG 2 cut(s) 293, 420
BssMI GATC 3 cut(s) 342, 391, 667
BssSI CACGAG 1 cut(s) 464
BssT1I CCWWGG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 3 cut(s) 86, 635, 642
Bst6I CTCTTC 4 cut(s) 345, 363, 381, 534
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 3 cut(s) 345, 394, 670
BstMAI GTCTC 3 cut(s) 422, 442, 614
BstMBI GATC 3 cut(s) 342, 391, 667
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 1 cut(s) 484
BstSCI CCNGG 2 cut(s) 292, 482
BstSLI GKGCMC 1 cut(s) 527
BstV2I GAAGAC 1 cut(s) 506
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 72, 638
Cac8I GCNNGC 1 cut(s) 55
CciI TCATGA 1 cut(s) 628
Csp6I GTAC 1 cut(s) 225
CviAII CATG 3 cut(s) 584, 629, 660
CviJI RGCY 5 cut(s) 196, 241, 416, 463, 482
CviKI_1 RGCY 5 cut(s) 196, 241, 416, 463, 482
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 64
DpnI GATC 3 cut(s) 344, 393, 669
DpnII GATC 3 cut(s) 342, 391, 667
Eam1104I CTCTTC 4 cut(s) 345, 363, 381, 534
EarI CTCTTC 4 cut(s) 345, 363, 381, 534
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 2 cut(s) 422, 442
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 587, 632, 663
FaiI YATR 9 cut(s) 29, 215, 252, 357, 493, 566, 585, 630, 661
FatI CATG 3 cut(s) 583, 628, 659
FauI CCCGC 2 cut(s) 280, 460
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 507
HapII CCGG 1 cut(s) 293
Hin1II CATG 3 cut(s) 587, 632, 663
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 525, 638
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 629
Hpy8I GTNNAC 2 cut(s) 525, 638
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 3 cut(s) 86, 635, 642
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 3 cut(s) 74, 260, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 611
Hsp92II CATG 3 cut(s) 587, 632, 663
Kzo9I GATC 3 cut(s) 342, 391, 667
LpnPI CCDG 5 cut(s) 39, 57, 306, 469, 496
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 3 cut(s) 86, 262, 281
MalI GATC 3 cut(s) 344, 393, 669
MboI GATC 3 cut(s) 342, 391, 667
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 8 cut(s) 125, 167, 198, 243, 396, 472, 528, 587
MnlI CCTC 7 cut(s) 140, 178, 272, 364, 382, 418, 427
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 2 cut(s) 201, 546
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 294, 484
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 484
MwoI GCNNNNNNNGC 1 cut(s) 413
NciI CCSGG 1 cut(s) 294
NdeII GATC 3 cut(s) 342, 391, 667
NlaIII CATG 3 cut(s) 587, 632, 663
NmuCI GTSAC 1 cut(s) 281
PagI TCATGA 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 188
Ple19I CGATCG 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 482
PvuI CGATCG 1 cut(s) 345
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 201, 546
Sau3AI GATC 3 cut(s) 342, 391, 667
ScrFI CCNGG 2 cut(s) 294, 484
SduI GDGCHC 1 cut(s) 527
SetI ASST 7 cut(s) 198, 243, 283, 465, 524, 577, 614
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 8 cut(s) 125, 167, 198, 243, 396, 472, 528, 587
SsiI CCGC 4 cut(s) 273, 407, 453, 579
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 2 cut(s) 292, 482
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 3 cut(s) 86, 635, 642
TaiI ACGT 1 cut(s) 614
TaqI TCGA 4 cut(s) 81, 120, 345, 412
TasI AATT 8 cut(s) 125, 167, 198, 243, 396, 472, 528, 587
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 201, 546
Tru9I TTAA 2 cut(s) 201, 546
TscAI CASTG 2 cut(s) 72, 645
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 351, 600
TspRI CASTG 2 cut(s) 72, 645
VneI GTGCAC 1 cut(s) 523
XapI RAATTY 2 cut(s) 125, 587
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.