Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011016

Physical Location & Seq

Genomic Coordinates Forward (+)

4266964 .. 4268251

Gene Structure 1288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13228.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTTACAGTTCTACGCGTGGATTTCAGTCACAAAATCAAAGACGATCCTAAACCAGAAGAAGCGGGCATAATTATAGTCAATGCAATGATCTACCGTGAAACTGATACCTTGACTTTGACGACGTCGTCGTCTGCCGACGAACTCATCAGCGATGATGGCAACGAGTGTCAAATCAAAATGGATTTGATTAATATCTTGAAGGTAGCAGGGCTCAGCGACTACGATACTGCACATATGATGTATCACTTTATTCCCCATGTTGCTGAAATAATGTCTTCCCCAAGTGAAGGGTATTCTCCAGGGTCTGCTTTAGAAGTGTCGTGGTGTCTTCTTCTTCTCGATGTGAGTCATATTGAGGCAGCGGTTAAAGTCTCGTTAGATTACGAAATCAAACAGGATCCTGAACCAAAAGATTCCGGCGGCACAATCAGAGTCAATGCAGTGATCAAGAATGAAAATGATATCTTGACTTTCACGACTTTGACGTTTGTCAACGAATTCCTCAACCAAGATTTTTGTCTCGTAGACTGGTGTAATTTCATGAAGGAAGCAGGGATCAGCGACCAAAATATTCCAGTTGTGATTTATCATATTTTATATGTTATTAAAATAACTTCTTCTGCAAGTAATGGGCATTCTCCCGGGTGTGCTTTACAAGTGTCGTTGTATCTTTTTCCTCACGACGAGACTGATATCGAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTCTGTTTGGGACCCGCAAGCAAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAGATTAATTATACAGGCGAAAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATACTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAGACCAATCACTTTTGTCCATTGTGTCGTTACGAGTTGCCACGCGAAGAAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

325

Amino Acids

36.43

Weight (kDa)

4.49

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	274 - 316	2e-13	Ring finger domain
zf-C3HC4_2	PF13923	274 - 315	5.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	275 - 301	2.4e-06	RING-like zinc finger
zf-C3HC4	PF00097	275 - 315	4.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	275 - 313	6.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18760 AT1G18770 AT1G18780 AT1G21960 AT2G29840 AT3G13228
fragaria_vesca	FvH4_2g27040
malus_domestica	MD08G1162100.v1.1
prunus_persica	Prupe.1G495200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295911
rosa_laevigata	RLG00000011757
rosa_multiflora	Rmu_sc0003139.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172060
rosa_rugosa	Rorug06G0255000 Rorug06G0255000
rosa_samantha	Rh6AG368800 Rh6BG376500 Rh6CG382700 Rh6DG369300
rosa_wichuraiana	Rw6G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	127, 130
AatII	GACGTC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	528
AccII	CGCG	2 cut(s)	18, 963
AciI	CCGC	4 cut(s)	65, 365, 423, 753
AclWI	GGATC	4 cut(s)	41, 395, 408, 566
AcsI	RAATTY	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	290, 783, 912
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	202, 713
AjnI	CCWGG	2 cut(s)	301, 782
Alw26I	GTCTC	6 cut(s)	379, 527, 683, 721, 722, 914
AlwI	GGATC	4 cut(s)	41, 395, 408, 566
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	644
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	500
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
AseI	ATTAAT	2 cut(s)	192, 804
Asp700I	GAANNNNTTC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	749
AsuC2I	CCSGG	2 cut(s)	645, 646
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	749
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	764
BbsI	GAAGAC	2 cut(s)	270, 323
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	890
BcgI	CGANNNNNNTGC	2 cut(s)	884, 918
BciT130I	CCWGG	2 cut(s)	303, 784
BclI	TGATCA	1 cut(s)	447
BcnI	CCSGG	2 cut(s)	645, 646
BcoDI	GTCTC	6 cut(s)	379, 527, 683, 721, 722, 914
BisI	GCNGC	2 cut(s)	363, 424
BlpI	GCTNAGC	1 cut(s)	215
BlsI	GCNGC	2 cut(s)	364, 425
Bme1390I	CCNGG	4 cut(s)	303, 645, 646, 784
Bme18I	GGWCC	1 cut(s)	749
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	3 cut(s)	402, 750, 751
BmrFI	CCNGG	4 cut(s)	303, 645, 646, 784
BmsI	GCATC	1 cut(s)	812
BoxI	GACNNNNGTC	1 cut(s)	491
BpiI	GAAGAC	2 cut(s)	270, 323
BpmI	CTGGAG	2 cut(s)	285, 873
Bpu1102I	GCTNAGC	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	645, 646
BsaBI	GATNNNNATC	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	2 cut(s)	722, 914
BsaJI	CCNNGG	2 cut(s)	302, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 783, 912
Bse1I	ACTGG	2 cut(s)	536, 578
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	303, 784
BseDI	CCNNGG	2 cut(s)	302, 644
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	290, 783, 912
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	536, 578
BseXI	GCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	18, 963
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	2 cut(s)	420, 645
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	3 cut(s)	290, 783, 912
BsmAI	GTCTC	6 cut(s)	379, 527, 683, 721, 722, 914
BsmFI	GGGAC	1 cut(s)	762
BsmI	GAATGC	1 cut(s)	637
Bso31I	GGTCTC	2 cut(s)	722, 914
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	6 cut(s)	46, 90, 400, 447, 558, 970
Bsp1720I	GCTNAGC	1 cut(s)	215
BspACI	CCGC	4 cut(s)	65, 365, 423, 753
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	2 cut(s)	18, 963
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	402, 750, 751
BspPI	GGATC	4 cut(s)	41, 395, 408, 566
BspTNI	GGTCTC	2 cut(s)	722, 914
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	536, 578
BssECI	CCNNGG	2 cut(s)	302, 644
BssMI	GATC	6 cut(s)	46, 90, 400, 447, 558, 970
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	764
Bst2BI	CACGAG	1 cut(s)	764
Bst2UI	CCWGG	2 cut(s)	303, 784
Bst4CI	ACNGT	2 cut(s)	10, 98
Bst6I	CTCTTC	1 cut(s)	834
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	67, 757
BstDEI	CTNAG	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	781
BstFNI	CGCG	2 cut(s)	18, 963
BstKTI	GATC	6 cut(s)	49, 93, 403, 450, 561, 973
BstMAI	GTCTC	6 cut(s)	379, 527, 683, 721, 722, 914
BstMBI	GATC	6 cut(s)	46, 90, 400, 447, 558, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 822
BstNI	CCWGG	2 cut(s)	303, 784
BstPAI	GACNNNNGTC	1 cut(s)	491
BstSCI	CCNGG	4 cut(s)	301, 643, 644, 782
BstUI	CGCG	2 cut(s)	18, 963
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	2 cut(s)	270, 323
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	67, 757
CaiI	CAGNNNCTG	1 cut(s)	308
CciI	TCATGA	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	749
Cfr9I	CCCGGG	1 cut(s)	644
CviAII	CATG	3 cut(s)	260, 544, 884
CviJI	RGCY	2 cut(s)	214, 869
CviKI_1	RGCY	2 cut(s)	214, 869
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	6 cut(s)	48, 92, 402, 449, 560, 972
DpnII	GATC	6 cut(s)	46, 90, 400, 447, 558, 970
DrdI	GACNNNNNNGTC	2 cut(s)	127, 130
DseDI	GACNNNNNNGTC	2 cut(s)	127, 130
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	722, 914
Eco32I	GATATC	2 cut(s)	466, 697
Eco47I	GGWCC	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	644
EcoNI	CCTNNNNNAGG	1 cut(s)	781
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	301, 782
EcoRV	GATATC	2 cut(s)	466, 697
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	3 cut(s)	263, 547, 887
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	3 cut(s)	259, 543, 883
FauI	CCCGC	2 cut(s)	58, 760
FauNDI	CATATG	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	363, 424
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	363, 424
GluI	GCNGC	2 cut(s)	363, 424
GsuI	CTGGAG	2 cut(s)	285, 873
HapII	CCGG	2 cut(s)	420, 645
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	263, 547, 887
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	349, 416, 435
HpaII	CCGG	2 cut(s)	420, 645
Hpy166II	GTNNAC	4 cut(s)	6, 496, 529, 881
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	8 cut(s)	199, 341, 404, 451, 469, 478, 544, 683
Hpy8I	GTNNAC	4 cut(s)	6, 496, 529, 881
Hpy99I	CGWCG	5 cut(s)	127, 130, 133, 143, 689
HpyAV	CCTTC	3 cut(s)	196, 284, 541
HpyCH4III	ACNGT	2 cut(s)	10, 98
HpyCH4IV	ACGT	2 cut(s)	125, 488
HpyCH4V	TGCA	5 cut(s)	86, 233, 443, 626, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 822
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	2 cut(s)	125, 488
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	263, 547, 887
KflI	GGGWCCC	1 cut(s)	749
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	6 cut(s)	46, 90, 400, 447, 558, 970
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	812
MaeII	ACGT	2 cut(s)	125, 488
MaeIII	GTNAC	2 cut(s)	29, 947
MalI	GATC	6 cut(s)	48, 92, 402, 449, 560, 972
MboI	GATC	6 cut(s)	46, 90, 400, 447, 558, 970
MboII	GAAGA	9 cut(s)	71, 270, 323, 326, 329, 612, 713, 851, 977
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	6 cut(s)	72, 500, 538, 736, 805, 828
MluI	ACGCGT	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	358, 444
MnlI	CCTC	4 cut(s)	352, 515, 690, 848
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	6 cut(s)	192, 369, 609, 779, 804, 846
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	2 cut(s)	420, 645
MspR9I	CCNGG	4 cut(s)	303, 645, 646, 784
Mva1269I	GAATGC	1 cut(s)	637
MvaI	CCWGG	2 cut(s)	303, 784
MvnI	CGCG	2 cut(s)	18, 963
MwoI	GCNNNNNNNGC	2 cut(s)	159, 822
NciI	CCSGG	2 cut(s)	645, 646
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	6 cut(s)	46, 90, 400, 447, 558, 970
NlaIII	CATG	3 cut(s)	263, 547, 887
NlaIV	GGNNCC	3 cut(s)	402, 750, 751
NmuCI	GTSAC	1 cut(s)	29
PagI	TCATGA	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 485
PctI	GAATGC	1 cut(s)	637
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	416
PflFI	GACNNNGTC	2 cut(s)	124, 127
PkrI	GCNGC	2 cut(s)	364, 425
PleI	GAGTC	2 cut(s)	357, 443
PpsI	GAGTC	2 cut(s)	357, 443
PpuMI	RGGWCCY	1 cut(s)	749
PshAI	GACNNNNGTC	1 cut(s)	491
PshBI	ATTAAT	2 cut(s)	192, 804
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	2 cut(s)	301, 782
PspGI	CCWGG	2 cut(s)	301, 782
PspN4I	GGNNCC	3 cut(s)	402, 750, 751
PspPI	GGNCC	1 cut(s)	749
PspPPI	RGGWCCY	1 cut(s)	749
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	400
PsyI	GACNNNGTC	2 cut(s)	124, 127
SaqAI	TTAA	6 cut(s)	192, 369, 609, 779, 804, 846
SatI	GCNGC	2 cut(s)	363, 424
Sau3AI	GATC	6 cut(s)	46, 90, 400, 447, 558, 970
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	2 cut(s)	358, 444
ScrFI	CCNGG	4 cut(s)	303, 645, 646, 784
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	5 cut(s)	113, 128, 207, 491, 877
SfaNI	GCATC	1 cut(s)	812
SinI	GGWCC	1 cut(s)	749
SmaI	CCCGGG	1 cut(s)	646
Sse9I	AATT	6 cut(s)	72, 500, 538, 736, 805, 828
SsiI	CCGC	4 cut(s)	65, 365, 423, 753
SspI	AATATT	1 cut(s)	574
StyD4I	CCNGG	4 cut(s)	301, 643, 644, 782
TaaI	ACNGT	2 cut(s)	10, 98
TaiI	ACGT	2 cut(s)	128, 491
TaqI	TCGA	2 cut(s)	342, 699
TasI	AATT	6 cut(s)	72, 500, 538, 736, 805, 828
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	6 cut(s)	192, 369, 609, 779, 804, 846
Tru9I	TTAA	6 cut(s)	192, 369, 609, 779, 804, 846
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	3 cut(s)	471, 532, 560
TspMI	CCCGGG	1 cut(s)	644
TspRI	CASTG	1 cut(s)	450
Tth111I	GACNNNGTC	2 cut(s)	124, 127
VpaK11BI	GGWCC	1 cut(s)	749
VspI	ATTAAT	2 cut(s)	192, 804
XagI	CCTNNNNNAGG	1 cut(s)	781
XapI	RAATTY	1 cut(s)	500
XmaI	CCCGGG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	708
ZraI	GACGTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.