Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011016

Physical Location & Seq

Genomic Coordinates Reverse (-)

56876696 .. 56877540

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG382700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAGACCCTTTACCAATACTCAATCTGCCAAGAAGAACAAAACCATGCTTTCCCCAATACCCAGTTGCTCTCCTGCGACTGTTTCATCTTTAACCTCCACTTCACTCATCAGCTTCAATTGTACTACCCCCAAGATTTGTTCATACCCTTGAACTCAATCCAAGAATCCTTCTTTGTACCCTGTAACGTGTTTTTCACACATACCCATGACACCATCAACACCATTCTCTCTGGGACAGGTGTCTCCCTGGACTTCATTCAGGCTTTGGTCCCTCAAGTTTACTCCTTTGCTTTGGAGATTGCCACTGAGTTTGAAAATGGGGACCCTGATGAGCCTAAAGCGGTCCCTTTGAATTTGGGTGTTGTGGCTGTCACGCCCTATGATGACCATGACCAGATTGAAAGGGCTATTTGGGAATCTGGGCAGGTTTTTAATCCGGTTCCGGCCACCAGGTCGTCTATTGCGGCATTGAAGAAGGTCAAGGTTGAGAATTTGAGTGTGGTGAATGAATGTAGTATCTGTTTGGAGGAGTTTTCCACTGGGTTGGAGATGTCACATCTACTAGAGTTTACAGGATATAAGGCTGCATCAAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

200

Amino Acids

22.51

Weight (kDa)

4.48

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18760 AT1G18770 AT1G18780 AT1G21960 AT2G29840 AT3G13228
fragaria_vesca	FvH4_2g27040
malus_domestica	MD08G1162100.v1.1
prunus_persica	Prupe.1G495200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295911
rosa_laevigata	RLG00000011757
rosa_multiflora	Rmu_sc0003139.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172060
rosa_rugosa	Rorug06G0255000 Rorug06G0255000
rosa_samantha	Rh6AG368800 Rh6BG376500 Rh6CG382700 Rh6DG369300
rosa_wichuraiana	Rw6G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
AciI	CCGC	2 cut(s)	344, 467
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	355, 493
AfaI	GTAC	2 cut(s)	125, 180
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	6 cut(s)	119, 154, 317, 355, 404, 475
AjnI	CCWGG	2 cut(s)	249, 452
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	2 cut(s)	355, 493
AspS9I	GGNCC	3 cut(s)	271, 325, 346
AsuHPI	GGTGA	1 cut(s)	517
AvaII	GGWCC	3 cut(s)	271, 325, 346
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	251, 454
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	2 cut(s)	468, 588
BlsI	GCNGC	2 cut(s)	469, 589
Bme1390I	CCNGG	2 cut(s)	251, 454
Bme18I	GGWCC	3 cut(s)	271, 325, 346
BmgT120I	GGNCC	3 cut(s)	271, 325, 346
BmiI	GGNNCC	5 cut(s)	273, 326, 327, 348, 444
BmrFI	CCNGG	2 cut(s)	251, 454
BmrI	ACTGGG	2 cut(s)	58, 552
BmsI	GCATC	1 cut(s)	599
BmuI	ACTGGG	2 cut(s)	58, 552
BoxI	GACNNNNGTC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	64, 547
BseBI	CCWGG	2 cut(s)	251, 454
BseDI	CCNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	64, 547
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	574
BshFI	GGCC	1 cut(s)	449
BsiSI	CCGG	2 cut(s)	440, 446
BslFI	GGGAC	4 cut(s)	250, 257, 332, 338
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	4 cut(s)	250, 257, 332, 338
BsnI	GGCC	1 cut(s)	449
BspACI	CCGC	2 cut(s)	344, 467
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	5 cut(s)	273, 326, 327, 348, 444
BspMI	ACCTGC	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	64, 547
BssECI	CCNNGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	251, 454
Bst4CI	ACNGT	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	251, 454
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	249, 452
BstV1I	GCAGC	1 cut(s)	574
BstXI	CCANNNNNNTGG	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	306, 540
BveI	ACCTGC	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	271, 325, 346
CsiI	ACCWGGT	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	124, 179
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	3 cut(s)	47, 209, 392
CviJI	RGCY	7 cut(s)	115, 266, 337, 371, 410, 449, 587
CviKI_1	RGCY	7 cut(s)	115, 266, 337, 371, 410, 449, 587
CviQI	GTAC	2 cut(s)	124, 179
DdeI	CTNAG	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	447
Eco47I	GGWCC	3 cut(s)	271, 325, 346
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	249, 452
FaeI	CATG	3 cut(s)	50, 212, 395
FaiI	YATR	7 cut(s)	48, 146, 204, 210, 384, 393, 582
FaqI	GGGAC	4 cut(s)	250, 257, 332, 338
FatI	CATG	3 cut(s)	46, 208, 391
Fnu4HI	GCNGC	2 cut(s)	468, 588
Fsp4HI	GCNGC	2 cut(s)	468, 588
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	2 cut(s)	468, 588
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	2 cut(s)	440, 446
Hin1II	CATG	3 cut(s)	50, 212, 395
HinfI	GANTC	2 cut(s)	167, 419
HpaII	CCGG	2 cut(s)	440, 446
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	2 cut(s)	283, 573
Hpy8I	GTNNAC	2 cut(s)	283, 573
HpyAV	CCTTC	2 cut(s)	181, 472
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	590
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	50, 212, 395
KflI	GGGWCCC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	1 cut(s)	599
MabI	ACCWGGT	1 cut(s)	452
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	185, 373, 555
MboII	GAAGA	2 cut(s)	47, 487
MfeI	CAATTG	1 cut(s)	119
MluCI	AATT	3 cut(s)	119, 355, 493
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	3 cut(s)	107, 285, 523
MseI	TTAA	3 cut(s)	93, 435, 601
MslI	CAYNNNNRTG	1 cut(s)	207
MspI	CCGG	2 cut(s)	440, 446
MspR9I	CCNGG	2 cut(s)	251, 454
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	251, 454
NlaIII	CATG	3 cut(s)	50, 212, 395
NlaIV	GGNNCC	5 cut(s)	273, 326, 327, 348, 444
NmuCI	GTSAC	2 cut(s)	373, 555
PfeI	GAWTC	2 cut(s)	167, 419
PkrI	GCNGC	2 cut(s)	469, 589
PpuMI	RGGWCCY	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	249, 452
PspGI	CCWGG	2 cut(s)	249, 452
PspN4I	GGNNCC	5 cut(s)	273, 326, 327, 348, 444
PspPI	GGNCC	3 cut(s)	271, 325, 346
PspPPI	RGGWCCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	125, 180
RsaNI	GTAC	2 cut(s)	124, 179
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	93, 435, 601
SatI	GCNGC	2 cut(s)	468, 588
Sau96I	GGNCC	3 cut(s)	271, 325, 346
ScrFI	CCNGG	2 cut(s)	251, 454
SetI	ASST	8 cut(s)	99, 117, 192, 244, 432, 458, 483, 489
SexAI	ACCWGGT	1 cut(s)	452
SfaNI	GCATC	1 cut(s)	599
SinI	GGWCC	3 cut(s)	271, 325, 346
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	3 cut(s)	119, 355, 493
SsiI	CCGC	2 cut(s)	344, 467
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	2 cut(s)	249, 452
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	192
TasI	AATT	3 cut(s)	119, 355, 493
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	2 cut(s)	167, 419
Tru1I	TTAA	3 cut(s)	93, 435, 601
Tru9I	TTAA	3 cut(s)	93, 435, 601
TscAI	CASTG	2 cut(s)	313, 547
TseFI	GTSAC	2 cut(s)	373, 555
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	2 cut(s)	373, 555
TspDTI	ATGAA	4 cut(s)	76, 133, 247, 525
TspRI	CASTG	2 cut(s)	313, 547
VpaK11BI	GGWCC	3 cut(s)	271, 325, 346
XapI	RAATTY	2 cut(s)	355, 493
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.