RLG00000011757

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011016
Physical Location & Seq
Forward (+)
12392822 .. 12396876
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011757

Sequence Viewer

Length: 765 bp
ATGGAGACCCTTTACCAATACTCAATCTGCCAAGAAGAACAAAACCATGCTTTCCCCAATACCCAGTTGCTCTCCTGCGACTGTTTCATCTTTAACCTCCACTTCACTCATCAGCTTCAATTGTACTACCCCCAAGATTTGTTCATACCCTTGAACTCAATCCAAGAATCCTTCTTTGTACCCTGTAACGTGTTTTTCACACATACCCATGACACCATCAACACCATTCTCTCTGGGACAGGTGTGTCCCTGGACTTCATTCAGGCTTTGGTCCCTCAAGTTTACTCCTTTGCTTTGGAGATTGCCACTGAGTTTGAAAATGGGGACCCTGATGAGCCTAAAGTGGTCCCTTTGAATTTGGGTGTTGTGGCTGTCACGCCCTATGATGACCATGACCAGATTGAGAGGGCTATTTGGGAATCTGGGCAGGTTTTTAATCCGGTTCCGGCCACCAGTTGGGATTGCGTCGAATTGCTAAAGATGTCACATCTACTAGAGTTTACAGGATATAAGGCTGCATCAAAAACTCAAGATGAGTTCTTATGCAGGTACCATGGGTATCTGATGGAGAAGACAAGCACCATTCAGAAACTAGCATATCAGATGATCAAATCAAACAGTCGTTCACTCCAAACAAAAAAGAAGAAAACGCCTCCTTCTCTCCGTCTCTTTTTTGCTGCGTCTTCCGTCTTCGTCAACATCAATTCTACTCAACATCACAAACGCAGTGCAAAAGGATCTGCAATGGAGTTGGTGCTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

255

Amino Acids

28.98

Weight (kDa)

5.64

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011016)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18760 AT1G18770 AT1G18780 AT1G21960 AT2G29840 AT3G13228
fragaria_vesca FvH4_2g27040
malus_domestica MD08G1162100.v1.1
prunus_persica Prupe.1G495200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295911
rosa_laevigata RLG00000011757
rosa_multiflora Rmu_sc0003139.1_g000008
rosa_roxburghii Rroxscaffold_7G00172060
rosa_rugosa Rorug06G0255000 Rorug06G0255000
rosa_samantha Rh6AG368800 Rh6BG376500 Rh6CG382700 Rh6DG369300
rosa_wichuraiana Rw6G032160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
Acc36I ACCTGC 2 cut(s) 418, 537
Acc65I GGTACC 1 cut(s) 549
AccB1I GGYRCC 1 cut(s) 549
AccB7I CCANNNNNTGG 1 cut(s) 456
AclWI GGATC 1 cut(s) 745
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 355
AfaI GTAC 3 cut(s) 125, 180, 551
AfiI CCNNNNNNNGG 1 cut(s) 456
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 4 cut(s) 119, 154, 317, 355
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 1 cut(s) 745
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 515, 677
ApoI RAATTY 1 cut(s) 355
Asp718I GGTACC 1 cut(s) 549
AspS9I GGNCC 3 cut(s) 271, 325, 346
AvaII GGWCC 3 cut(s) 271, 325, 346
BanI GGYRCC 1 cut(s) 549
BbsI GAAGAC 3 cut(s) 578, 675, 682
BbvI GCAGC 2 cut(s) 502, 664
BccI CCATC 2 cut(s) 224, 559
BciT130I CCWGG 1 cut(s) 251
BclI TGATCA 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 2 cut(s) 494, 593
BfuAI ACCTGC 2 cut(s) 418, 537
BisI GCNGC 2 cut(s) 516, 678
BlsI GCNGC 2 cut(s) 517, 679
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 3 cut(s) 271, 325, 346
BmgT120I GGNCC 3 cut(s) 271, 325, 346
BmiI GGNNCC 6 cut(s) 273, 326, 327, 348, 444, 551
BmrFI CCNGG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 527
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 3 cut(s) 578, 675, 682
BpuEI CTTGAG 2 cut(s) 261, 513
BsaJI CCNNGG 2 cut(s) 249, 553
BsaWI WCCGGW 1 cut(s) 439
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse1I ACTGG 2 cut(s) 64, 453
Bse3DI GCAATG 1 cut(s) 750
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 249, 553
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 2 cut(s) 64, 453
BseXI GCAGC 2 cut(s) 502, 664
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 440, 446
BslFI GGGAC 5 cut(s) 232, 250, 257, 332, 338
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 671
BsmBI CGTCTC 1 cut(s) 671
BsmFI GGGAC 5 cut(s) 232, 250, 257, 332, 338
BsnI GGCC 1 cut(s) 449
Bsp143I GATC 2 cut(s) 606, 737
Bsp19I CCATGG 1 cut(s) 553
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 6 cut(s) 273, 326, 327, 348, 444, 551
BspMI ACCTGC 2 cut(s) 418, 537
BspPI GGATC 1 cut(s) 745
BspT107I GGYRCC 1 cut(s) 549
BsrDI GCAATG 1 cut(s) 750
BsrI ACTGG 2 cut(s) 64, 453
BssECI CCNNGG 2 cut(s) 249, 553
BssMI GATC 2 cut(s) 606, 737
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 83, 620
BstDEI CTNAG 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 553
BstKTI GATC 2 cut(s) 609, 740
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 2 cut(s) 606, 737
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 502, 664
BstV2I GAAGAC 3 cut(s) 578, 675, 682
BstX2I RGATCY 1 cut(s) 737
BstYI RGATCY 1 cut(s) 737
BsuRI GGCC 1 cut(s) 449
BtgI CCRYGG 1 cut(s) 553
BtsI GCAGTG 1 cut(s) 733
BtsIMutI CAGTG 2 cut(s) 306, 733
BveI ACCTGC 2 cut(s) 418, 537
Cfr13I GGNCC 3 cut(s) 271, 325, 346
CseI GACGC 2 cut(s) 454, 669
Csp6I GTAC 3 cut(s) 124, 179, 550
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 4 cut(s) 47, 209, 392, 554
CviJI RGCY 7 cut(s) 115, 266, 337, 371, 410, 449, 515
CviKI_1 RGCY 7 cut(s) 115, 266, 337, 371, 410, 449, 515
CviQI GTAC 3 cut(s) 124, 179, 550
DdeI CTNAG 1 cut(s) 309
DpnI GATC 2 cut(s) 608, 739
DpnII GATC 2 cut(s) 606, 737
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 553
Eco47I GGWCC 3 cut(s) 271, 325, 346
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 4 cut(s) 50, 212, 395, 557
FaqI GGGAC 5 cut(s) 232, 250, 257, 332, 338
FatI CATG 4 cut(s) 46, 208, 391, 553
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 2 cut(s) 516, 678
Fsp4HI GCNGC 2 cut(s) 516, 678
FspBI CTAG 2 cut(s) 494, 593
GluI GCNGC 2 cut(s) 516, 678
HaeIII GGCC 1 cut(s) 449
HapII CCGG 2 cut(s) 440, 446
HgaI GACGC 2 cut(s) 454, 669
Hin1II CATG 4 cut(s) 50, 212, 395, 557
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 2 cut(s) 167, 419
HpaII CCGG 2 cut(s) 440, 446
Hpy166II GTNNAC 4 cut(s) 283, 501, 626, 697
Hpy188I TCNGA 3 cut(s) 564, 588, 603
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 4 cut(s) 283, 501, 626, 697
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 2 cut(s) 181, 666
HpyCH4III ACNGT 2 cut(s) 83, 620
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 4 cut(s) 518, 546, 731, 743
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 4 cut(s) 50, 212, 395, 557
KflI GGGWCCC 1 cut(s) 325
KpnI GGTACC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 606
Kzo9I GATC 2 cut(s) 606, 737
Lsp1109I GCAGC 2 cut(s) 502, 664
LweI GCATC 1 cut(s) 527
MaeI CTAG 2 cut(s) 494, 593
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 3 cut(s) 185, 373, 483
MalI GATC 2 cut(s) 608, 739
MboI GATC 2 cut(s) 606, 737
MboII GAAGA 5 cut(s) 47, 583, 655, 675, 682
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 1 cut(s) 737
MluCI AATT 4 cut(s) 119, 355, 470, 703
MnlI CCTC 4 cut(s) 107, 285, 399, 663
MseI TTAA 2 cut(s) 93, 435
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 2 cut(s) 440, 446
MspR9I CCNGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 251
NcoI CCATGG 1 cut(s) 553
NdeII GATC 2 cut(s) 606, 737
NlaIII CATG 4 cut(s) 50, 212, 395, 557
NlaIV GGNNCC 6 cut(s) 273, 326, 327, 348, 444, 551
NmuCI GTSAC 2 cut(s) 373, 483
PfeI GAWTC 2 cut(s) 167, 419
PflMI CCANNNNNTGG 1 cut(s) 456
PkrI GCNGC 2 cut(s) 517, 679
PpuMI RGGWCCY 1 cut(s) 325
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 6 cut(s) 273, 326, 327, 348, 444, 551
PspPI GGNCC 3 cut(s) 271, 325, 346
PspPPI RGGWCCY 1 cut(s) 325
PsuI RGATCY 1 cut(s) 737
RsaI GTAC 3 cut(s) 125, 180, 551
RsaNI GTAC 3 cut(s) 124, 179, 550
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 2 cut(s) 93, 435
SatI GCNGC 2 cut(s) 516, 678
Sau3AI GATC 2 cut(s) 606, 737
Sau96I GGNCC 3 cut(s) 271, 325, 346
ScrFI CCNGG 1 cut(s) 251
SetI ASST 6 cut(s) 99, 117, 192, 244, 432, 551
SfaNI GCATC 1 cut(s) 527
SinI GGWCC 3 cut(s) 271, 325, 346
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 276, 528
SmoI CTYRAG 2 cut(s) 276, 528
Sse9I AATT 4 cut(s) 119, 355, 470, 703
SspMI CTAG 2 cut(s) 494, 593
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 2 cut(s) 83, 620
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 468
TasI AATT 4 cut(s) 119, 355, 470, 703
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 2 cut(s) 167, 419
Tru1I TTAA 2 cut(s) 93, 435
Tru9I TTAA 2 cut(s) 93, 435
TscAI CASTG 2 cut(s) 313, 733
TseFI GTSAC 2 cut(s) 373, 483
TseI GCWGC 2 cut(s) 515, 677
Tsp45I GTSAC 2 cut(s) 373, 483
TspDTI ATGAA 3 cut(s) 76, 133, 247
TspGWI ACGGA 2 cut(s) 653, 676
TspRI CASTG 2 cut(s) 313, 733
Van91I CCANNNNNTGG 1 cut(s) 456
VpaK11BI GGWCC 3 cut(s) 271, 325, 346
XapI RAATTY 1 cut(s) 355
XspI CTAG 2 cut(s) 494, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.