Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011016

Physical Location & Seq

Genomic Coordinates Reverse (-)

12732387 .. 12733983

Gene Structure 1597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCGTGGAGATTCAAAGCAAGAGGGAGATGAAGAAAGCAAGCTTACAGTGAGCTGTGCTAATGACGTAGAAGGGATTCGCGTAAGGAAGAGAGGCGATTCCAGAGAAGAAGAAGCAAAGGGATTCAAATCCCTAAATTGGAACTGGGATTTTCAAACTTGTGCTTTAAGAGTGTCGATGACTCTTACCACCGTTATTCCTCCAGAACAAACTGAAGAAGCAGCTCCATCTGATCACGCTGAAGAAGTTGATCAAGTCTCGCTCAATGAGGATCTAGGTTTGGAGGTTGAGAACGATGCCAACTTTTTCTATGGAGAATCATCTTCATCTCAGCCTGGCCGAGGTGTTCCATTCTACGAGCTTCCACACTTAAGGTATGAGCACGATGTTAACTTTTCTTATGGAGAAGCATCTTCGTCTCAGCTGGGAGGATTTGTTCCATTTCACGGATTGCCATACTTAGGCTATGAGCAGGATCCTAACGTTTTTTACGGACAATCATCTCCATATCAGCCTCAAGAAGTTCTATTCCACTGGTTGCCACGCTATGAGCACGACTTCGATCATCAAACTGAGGAAGCGTTTCATCCTCAGTTTGAACAAGTTTTGCAAGCTTCATTCAATGAGACCAATACTGCCAGGTTAAAACCTGCGAGCAAGCTCGCTGTTGAGTCTTTAAATAGGAAAACATACAAGAAGGCTAGTGATGTCGTAGGTGAGAATGAAATGTGTAGTATTTGTCTAGAAGAGTTTGACGACGGAAGAAGCATTGTGGCTCTACCATGTGGACACGAGTTTGACGATGAGTGTGCCCTGAAGTGGTTTGAGACCAATCACGATTGTCCTCTATGTCGTTTCAAGTTGCCATGTGAAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

293

Amino Acids

33.39

Weight (kDa)

4.55

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	241 - 285	2.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	242 - 285	1.5e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	243 - 285	2e-15	Ring finger domain
zf-C3HC4_2	PF13923	243 - 284	8.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	244 - 270	1.7e-08	RING-like zinc finger
zf-C3HC4	PF00097	244 - 284	3.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	244 - 282	1.1e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18760 AT1G18770 AT1G18780 AT1G21960 AT2G29840 AT3G13228
fragaria_vesca	FvH4_2g27040
malus_domestica	MD08G1162100.v1.1
prunus_persica	Prupe.1G495200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295911
rosa_laevigata	RLG00000011757
rosa_multiflora	Rmu_sc0003139.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172060
rosa_rugosa	Rorug06G0255000 Rorug06G0255000
rosa_samantha	Rh6AG368800 Rh6BG376500 Rh6CG382700 Rh6DG369300
rosa_wichuraiana	Rw6G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	658
AccII	CGCG	1 cut(s)	81
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	3 cut(s)	279, 470, 483
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	3 cut(s)	234, 261, 836
AfiI	CCNNNNNNNGG	5 cut(s)	138, 341, 446, 461, 819
AflII	CTTAAG	1 cut(s)	370
AgsI	TTSAA	6 cut(s)	15, 127, 155, 599, 622, 859
AjnI	CCWGG	2 cut(s)	334, 638
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	7 cut(s)	43, 54, 224, 361, 424, 614, 661
AluI	AGCT	7 cut(s)	43, 54, 224, 361, 424, 614, 661
Alw21I	GWGCWC	2 cut(s)	384, 555
Alw26I	GTCTC	4 cut(s)	262, 423, 620, 821
AlwI	GGATC	3 cut(s)	279, 470, 483
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	221
Asp700I	GAANNNNTTC	2 cut(s)	75, 582
AsuHPI	GGTGA	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	814
BamHI	GGATCC	1 cut(s)	475
BauI	CACGAG	1 cut(s)	791
Bbv12I	GWGCWC	2 cut(s)	384, 555
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	2 cut(s)	336, 640
BclI	TGATCA	2 cut(s)	232, 250
BcoDI	GTCTC	4 cut(s)	262, 423, 620, 821
BfaI	CTAG	3 cut(s)	275, 702, 743
BfrI	CTTAAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	336, 640
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	336, 640
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	286, 419
BmuI	ACTGGG	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	127
BsaI	GGTCTC	2 cut(s)	620, 821
BsaJI	CCNNGG	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 341, 446, 461, 819
Bse1I	ACTGG	2 cut(s)	149, 539
Bse8I	GATNNNNATC	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	336, 640
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	586
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	5 cut(s)	138, 341, 446, 461, 819
BseMII	CTCAG	4 cut(s)	344, 434, 564, 605
BseNI	ACTGG	2 cut(s)	149, 539
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	384, 555
BslI	CCNNNNNNNGG	5 cut(s)	138, 341, 446, 461, 819
BsmAI	GTCTC	4 cut(s)	262, 423, 620, 821
BsmBI	CGTCTC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	2 cut(s)	620, 821
Bsp1286I	GDGCHC	3 cut(s)	384, 555, 814
Bsp143I	GATC	6 cut(s)	232, 250, 271, 475, 562, 874
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	4 cut(s)	343, 433, 565, 604
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	3 cut(s)	279, 470, 483
BspTI	CTTAAG	1 cut(s)	370
BspTNI	GGTCTC	2 cut(s)	620, 821
BsrI	ACTGG	2 cut(s)	149, 539
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	6 cut(s)	232, 250, 271, 475, 562, 874
BssSI	CACGAG	1 cut(s)	791
Bst2BI	CACGAG	1 cut(s)	791
Bst2UI	CCWGG	2 cut(s)	336, 640
Bst4CI	ACNGT	2 cut(s)	49, 193
Bst6I	CTCTTC	2 cut(s)	83, 741
BstAFI	CTTAAG	1 cut(s)	370
BstC8I	GCNNGC	5 cut(s)	41, 612, 655, 659, 663
BstDEI	CTNAG	5 cut(s)	330, 420, 460, 573, 591
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	586
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	6 cut(s)	235, 253, 274, 478, 565, 877
BstMAI	GTCTC	4 cut(s)	262, 423, 620, 821
BstMBI	GATC	6 cut(s)	232, 250, 271, 475, 562, 874
BstNI	CCWGG	2 cut(s)	336, 640
BstSCI	CCNGG	2 cut(s)	334, 638
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	271, 475
BstYI	RGATCY	2 cut(s)	271, 475
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	2 cut(s)	54, 532
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	5 cut(s)	41, 612, 655, 659, 663
CviAII	CATG	2 cut(s)	783, 867
DdeI	CTNAG	5 cut(s)	330, 420, 460, 573, 591
DpnI	GATC	6 cut(s)	234, 252, 273, 477, 564, 876
DpnII	GATC	6 cut(s)	232, 250, 271, 475, 562, 874
DraI	TTTAAA	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	83, 741
EarI	CTCTTC	2 cut(s)	83, 741
Eco31I	GGTCTC	2 cut(s)	620, 821
Eco57I	CTGAAG	3 cut(s)	234, 261, 836
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	334, 638
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	2 cut(s)	786, 870
FatI	CATG	2 cut(s)	782, 866
FbaI	TGATCA	2 cut(s)	232, 250
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	3 cut(s)	275, 702, 743
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	786, 870
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	2 cut(s)	41, 612
HinfI	GANTC	7 cut(s)	11, 76, 98, 123, 181, 317, 671
HpaI	GTTAAC	1 cut(s)	391
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	2 cut(s)	391, 788
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	5 cut(s)	102, 203, 518, 743, 836
Hpy8I	GTNNAC	2 cut(s)	391, 788
Hpy99I	CGWCG	1 cut(s)	761
HpyAV	CCTTC	2 cut(s)	65, 691
HpyCH4III	ACNGT	2 cut(s)	49, 193
HpyCH4IV	ACGT	2 cut(s)	66, 483
HpyCH4V	TGCA	1 cut(s)	610
HpyF3I	CTNAG	5 cut(s)	330, 420, 460, 573, 591
HpySE526I	ACGT	2 cut(s)	66, 483
Hsp92II	CATG	2 cut(s)	786, 870
Ksp22I	TGATCA	2 cut(s)	232, 250
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	232, 250, 271, 475, 562, 874
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	286, 419
MaeI	CTAG	3 cut(s)	275, 702, 743
MaeII	ACGT	2 cut(s)	66, 483
MalI	GATC	6 cut(s)	234, 252, 273, 477, 564, 876
MboI	GATC	6 cut(s)	232, 250, 271, 475, 562, 874
MflI	RGATCY	2 cut(s)	271, 475
MhlI	GDGCHC	3 cut(s)	384, 555, 814
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	175, 680
MroXI	GAANNNNTTC	2 cut(s)	75, 582
MseI	TTAA	5 cut(s)	167, 371, 390, 644, 677
MspA1I	CMGCKG	1 cut(s)	424
MspCI	CTTAAG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	336, 640
MvaI	CCWGG	2 cut(s)	336, 640
MvnI	CGCG	1 cut(s)	81
NdeII	GATC	6 cut(s)	232, 250, 271, 475, 562, 874
NlaIII	CATG	2 cut(s)	786, 870
NlaIV	GGNNCC	1 cut(s)	477
NmeAIII	GCCGAG	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PdmI	GAANNNNTTC	2 cut(s)	75, 582
PfeI	GAWTC	5 cut(s)	11, 76, 98, 123, 317
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	175, 679
PpsI	GAGTC	2 cut(s)	175, 679
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	334, 638
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	2 cut(s)	334, 638
PspN4I	GGNNCC	1 cut(s)	477
PsuI	RGATCY	2 cut(s)	271, 475
PvuII	CAGCTG	1 cut(s)	424
SaqAI	TTAA	5 cut(s)	167, 371, 390, 644, 677
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	6 cut(s)	232, 250, 271, 475, 562, 874
SchI	GAGTC	2 cut(s)	175, 680
ScrFI	CCNGG	2 cut(s)	336, 640
SduI	GDGCHC	3 cut(s)	384, 555, 814
SfaNI	GCATC	2 cut(s)	286, 419
SmlI	CTYRAG	2 cut(s)	370, 516
SmoI	CTYRAG	2 cut(s)	370, 516
Sse9I	AATT	1 cut(s)	136
SspMI	CTAG	3 cut(s)	275, 702, 743
StyD4I	CCNGG	2 cut(s)	334, 638
TaaI	ACNGT	2 cut(s)	49, 193
TaiI	ACGT	2 cut(s)	69, 486
TaqI	TCGA	2 cut(s)	176, 561
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	5 cut(s)	11, 76, 98, 123, 317
Tru1I	TTAA	5 cut(s)	167, 371, 390, 644, 677
Tru9I	TTAA	5 cut(s)	167, 371, 390, 644, 677
TscAI	CASTG	2 cut(s)	54, 539
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	5 cut(s)	45, 315, 575, 606, 738
TspGWI	ACGGA	3 cut(s)	462, 507, 774
TspRI	CASTG	2 cut(s)	54, 539
Vha464I	CTTAAG	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	339
XbaI	TCTAGA	1 cut(s)	742
XmnI	GAANNNNTTC	2 cut(s)	75, 582
XspI	CTAG	3 cut(s)	275, 702, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.