AT1G18780

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011016
Physical Location & Seq
Reverse (-)
6476258 .. 6477235
978 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18780.1

Sequence Viewer

Length: 978 bp
ATGAATGAATTACTTCAAGAGAACCCTAAACGGCTAAACATAATCGATAAAATTTATTTATTCTTGATCGTTCTCGCCATCATGATTTCATCCTTCGCACATGAAATTGAGCACAATCCTGTACCTGAAGATGTTGGCATAATCAATATCAGTGTTGCTACGACCAAAATATATCAAAGTATCATCAGTAATTATGATCTCTATGATGAACTAACATCAGAATTCTCTTGTATCCCGGTTTCTTTACGCGACTGTGTTGCTGTAGAGCTTACTGAATTCTTGACGGGATCAGGAAAAATCACTCCCATCGATGCTTACCATGTGTTACTAGAGTTGTTTCGATTCGTCGATGAAATAACTTCCTCTGATGATTATACTCCAGGTTGTGCTTTAAGAGTGTTGATGACTCTTACAATCGCTATTCCTCCTGAACATATTGAAGAAGACGTTCTAGGTTTAGAGGATGAGCAAGACGTTTACGGAGAAGCATCTTCATCTCAGTTTGAAGAAGTTGTTCCATTCTACGGGTTGCCATACTTCAGGGATGACTACAATGATTACTTTCCTTACGAAGAAGCATCTTCATCTCAGCTTGGAGAAGTTGTTCTATTCCACGGGTTGCCACACTTAAGGGATGAGCACCATGCTAGCTTTGGCTTCGATCATCAAATTGAAGAAGCGTCTCATTCTCAGATTGAAGAAGTTTTTCAAGTTTCGTTCAATGAGACCAACACTGTCAGGTTAAAACCTGCGAGCAAGCTCACTGTCGGGGCTTTGAATAGGAAAACATACAAGAAAGCTAGTGGTGTTGTATGTGAGAATGACGTGTGCACTATTTGTTTGGAAGAGTTTGACGATGGAAGAAGTATTGTGACTTTACCGTGTGGGCACGAGTTTGACGAGGAGTGTGTTTTAGAGTGGTTTGTGAGAAGTCATGTATGTCCATTGTGTCGTCTCGAGTTGCCATGTGAAAGATAA

Protein Analysis

325

Amino Acids

36.92

Weight (kDa)

4.43

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 274 - 318 4.5e-07 RING-H2 zinc finger domain
zf-C3HC4_3 PF13920 274 - 319 1.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 276 - 318 9.6e-15 Ring finger domain
zf-RING_11 PF17123 277 - 304 4.2e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 277 - 317 9.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 277 - 317 4.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 277 - 315 4.9e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011016)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18760 AT1G18770 AT1G18780 AT1G21960 AT2G29840 AT3G13228
fragaria_vesca FvH4_2g27040
malus_domestica MD08G1162100.v1.1
prunus_persica Prupe.1G495200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295911
rosa_laevigata RLG00000011757
rosa_multiflora Rmu_sc0003139.1_g000008
rosa_roxburghii Rroxscaffold_7G00172060
rosa_rugosa Rorug06G0255000 Rorug06G0255000
rosa_samantha Rh6AG368800 Rh6BG376500 Rh6CG382700 Rh6DG369300
rosa_wichuraiana Rw6G032160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 757
AccII CGCG 1 cut(s) 249
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 3 cut(s) 51, 221, 275
AcuI CTGAAG 2 cut(s) 147, 523
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 524
AflII CTTAAG 1 cut(s) 628
AflIII ACRYGT 1 cut(s) 825
AgsI TTSAA 8 cut(s) 17, 440, 506, 674, 698, 710, 721, 778
AjiI CACGTC 1 cut(s) 826
AjnI CCWGG 1 cut(s) 379
AloI GAACNNNNNNTCC 2 cut(s) 588, 620
AluBI AGCT 5 cut(s) 268, 592, 651, 760, 800
AluI AGCT 5 cut(s) 268, 592, 651, 760, 800
Alw21I GWGCWC 3 cut(s) 114, 642, 833
Alw26I GTCTC 3 cut(s) 687, 719, 959
Alw44I GTGCAC 1 cut(s) 829
AlwI GGATC 1 cut(s) 295
Ama87I CYCGRG 1 cut(s) 956
ApaLI GTGCAC 1 cut(s) 829
ApoI RAATTY 3 cut(s) 51, 221, 275
Asp700I GAANNNNTTC 5 cut(s) 12, 447, 513, 603, 705
AsuC2I CCSGG 1 cut(s) 236
AsuNHI GCTAGC 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 956
BaeGI GKGCMC 2 cut(s) 833, 891
BauI CACGAG 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 3 cut(s) 114, 642, 833
BccI CCATC 3 cut(s) 86, 314, 851
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 381
BciVI GTATCC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 3 cut(s) 687, 719, 959
BfaI CTAG 4 cut(s) 329, 452, 648, 801
BfmI CTRYAG 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 628
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 236, 381
BmeT110I CYCGRG 1 cut(s) 956
BmgBI CACGTC 1 cut(s) 826
BmrFI CCNGG 2 cut(s) 236, 381
BmsI GCATC 3 cut(s) 301, 497, 587
BmtI GCTAGC 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 236
Bsa29I ATCGAT 2 cut(s) 45, 309
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 524
BseBI CCWGG 1 cut(s) 381
BseCI ATCGAT 2 cut(s) 45, 309
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 4 cut(s) 89, 469, 550, 640
BseLI CCNNNNNNNGG 1 cut(s) 524
BseMII CTCAG 3 cut(s) 512, 602, 704
BseRI GAGGAG 1 cut(s) 917
BseSI GKGCMC 2 cut(s) 833, 891
Bsh1236I CGCG 1 cut(s) 249
BshVI ATCGAT 2 cut(s) 45, 309
BsiHKAI GWGCWC 3 cut(s) 114, 642, 833
BsiHKCI CYCGRG 1 cut(s) 956
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 3 cut(s) 687, 719, 959
BsmBI CGTCTC 2 cut(s) 687, 959
Bso31I GGTCTC 1 cut(s) 719
BsoBI CYCGRG 1 cut(s) 956
Bsp1286I GDGCHC 4 cut(s) 114, 642, 833, 891
Bsp143I GATC 4 cut(s) 66, 196, 287, 661
BspCNI CTCAG 3 cut(s) 511, 601, 703
BspDI ATCGAT 2 cut(s) 45, 309
BspFNI CGCG 1 cut(s) 249
BspHI TCATGA 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 757
BspOI GCTAGC 1 cut(s) 651
BspPI GGATC 1 cut(s) 295
BspTI CTTAAG 1 cut(s) 628
BspTNI GGTCTC 1 cut(s) 719
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 4 cut(s) 66, 196, 287, 661
BssSI CACGAG 1 cut(s) 890
Bst2BI CACGAG 1 cut(s) 890
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 4 cut(s) 254, 736, 766, 882
Bst6I CTCTTC 1 cut(s) 840
BstAFI CTTAAG 1 cut(s) 628
BstC8I GCNNGC 3 cut(s) 649, 754, 758
BstDEI CTNAG 3 cut(s) 498, 588, 690
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 4 cut(s) 89, 469, 550, 640
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 4 cut(s) 69, 199, 290, 664
BstMAI GTCTC 3 cut(s) 687, 719, 959
BstMBI GATC 4 cut(s) 66, 196, 287, 661
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 2 cut(s) 234, 379
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 2 cut(s) 833, 891
BstUI CGCG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 450
Bsu15I ATCGAT 2 cut(s) 45, 309
BsuI GTATCC 1 cut(s) 242
BsuTUI ATCGAT 2 cut(s) 45, 309
BtgI CCRYGG 1 cut(s) 613
BtrI CACGTC 1 cut(s) 826
BtsCI GGATG 4 cut(s) 89, 469, 550, 640
BtsIMutI CAGTG 3 cut(s) 157, 732, 762
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 3 cut(s) 649, 754, 758
CciI TCATGA 1 cut(s) 81
ClaI ATCGAT 2 cut(s) 45, 309
CseI GACGC 1 cut(s) 669
Csp6I GTAC 1 cut(s) 122
CviAII CATG 6 cut(s) 82, 101, 320, 644, 935, 966
CviJI RGCY 8 cut(s) 34, 268, 592, 651, 657, 760, 773, 800
CviKI_1 RGCY 8 cut(s) 34, 268, 592, 651, 657, 760, 773, 800
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 3 cut(s) 498, 588, 690
DpnI GATC 4 cut(s) 68, 198, 289, 663
DpnII GATC 4 cut(s) 66, 196, 287, 661
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Eco31I GGTCTC 1 cut(s) 719
Eco57I CTGAAG 2 cut(s) 147, 523
Eco88I CYCGRG 1 cut(s) 956
EcoRI GAATTC 2 cut(s) 221, 275
EcoRII CCWGG 1 cut(s) 379
Esp3I CGTCTC 2 cut(s) 687, 959
FaeI CATG 6 cut(s) 85, 104, 323, 647, 938, 969
FatI CATG 6 cut(s) 81, 100, 319, 643, 934, 965
FokI GGATG 4 cut(s) 76, 476, 557, 647
FspBI CTAG 4 cut(s) 329, 452, 648, 801
GsuI CTGGAG 1 cut(s) 363
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 669
Hin1II CATG 6 cut(s) 85, 104, 323, 647, 938, 969
HinfI GANTC 2 cut(s) 342, 406
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 478, 831
Hpy188I TCNGA 3 cut(s) 220, 367, 693
Hpy188III TCNNGA 7 cut(s) 17, 64, 82, 280, 291, 428, 956
Hpy8I GTNNAC 2 cut(s) 478, 831
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 4 cut(s) 254, 736, 766, 882
HpyCH4IV ACGT 3 cut(s) 447, 474, 825
HpyCH4V TGCA 1 cut(s) 831
HpyF3I CTNAG 3 cut(s) 498, 588, 690
HpySE526I ACGT 3 cut(s) 447, 474, 825
Hsp92II CATG 6 cut(s) 85, 104, 323, 647, 938, 969
Kzo9I GATC 4 cut(s) 66, 196, 287, 661
LweI GCATC 3 cut(s) 301, 497, 587
MaeI CTAG 4 cut(s) 329, 452, 648, 801
MaeII ACGT 3 cut(s) 447, 474, 825
MaeIII GTNAC 2 cut(s) 324, 871
MalI GATC 4 cut(s) 68, 198, 289, 663
MboI GATC 4 cut(s) 66, 196, 287, 661
MhlI GDGCHC 4 cut(s) 114, 642, 833, 891
MluCI AATT 7 cut(s) 8, 51, 105, 190, 221, 275, 669
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 4 cut(s) 373, 435, 454, 895
MroXI GAANNNNTTC 5 cut(s) 12, 447, 513, 603, 705
MseI TTAA 3 cut(s) 392, 629, 743
MspCI CTTAAG 1 cut(s) 628
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 2 cut(s) 236, 381
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 1 cut(s) 249
NciI CCSGG 1 cut(s) 236
NdeII GATC 4 cut(s) 66, 196, 287, 661
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 6 cut(s) 85, 104, 323, 647, 938, 969
NmuCI GTSAC 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 956
PagI TCATGA 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 897
PdmI GAANNNNTTC 5 cut(s) 12, 447, 513, 603, 705
PfeI GAWTC 1 cut(s) 342
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 3 cut(s) 392, 629, 743
Sau3AI GATC 4 cut(s) 66, 196, 287, 661
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 2 cut(s) 236, 381
SduI GDGCHC 4 cut(s) 114, 642, 833, 891
SfaNI GCATC 3 cut(s) 301, 497, 587
SfcI CTRYAG 1 cut(s) 261
Sfr274I CTCGAG 1 cut(s) 956
SlaI CTCGAG 1 cut(s) 956
SmlI CTYRAG 2 cut(s) 628, 956
SmoI CTYRAG 2 cut(s) 628, 956
Sse9I AATT 7 cut(s) 8, 51, 105, 190, 221, 275, 669
SspMI CTAG 4 cut(s) 329, 452, 648, 801
StyD4I CCNGG 2 cut(s) 234, 379
TaaI ACNGT 4 cut(s) 254, 736, 766, 882
TaiI ACGT 3 cut(s) 450, 477, 828
TaqI TCGA 6 cut(s) 45, 309, 340, 348, 660, 957
TasI AATT 7 cut(s) 8, 51, 105, 190, 221, 275, 669
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 3 cut(s) 392, 629, 743
Tru9I TTAA 3 cut(s) 392, 629, 743
TscAI CASTG 3 cut(s) 157, 739, 769
TseFI GTSAC 1 cut(s) 871
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 8 cut(s) 17, 21, 78, 117, 222, 366, 483, 573
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 3 cut(s) 157, 739, 769
Vha464I CTTAAG 1 cut(s) 628
VneI GTGCAC 1 cut(s) 829
XapI RAATTY 3 cut(s) 51, 221, 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 650
XhoI CTCGAG 1 cut(s) 956
XmnI GAANNNNTTC 5 cut(s) 12, 447, 513, 603, 705
XspI CTAG 4 cut(s) 329, 452, 648, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.