Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011016

Physical Location & Seq

Genomic Coordinates Reverse (-)

6473370 .. 6474048

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAAATATATTTTAGCCACAGTATCATACGCAATCCTCAACCAGAAAACGAGGGCACAATCACAGTAAATGCAAAGATCGACGGTTACAATCCCACGCCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGTTCTACTGGTGAAATGTGCATAATTTGTTTGGAAGAGTTTAGTGAAGGAAGAAGAGTTGTTACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAATCACAGTTGCCCCCTCTGTCGTTTCAAGTTGCCATATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

106

Amino Acids

12.12

Weight (kDa)

7.6

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	53 - 100	1.4e-09	RING-H2 zinc finger domain
zf-C3HC4_3	PF13920	57 - 100	8.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	58 - 100	4.1e-16	Ring finger domain
zf-C3HC4_2	PF13923	58 - 99	7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	59 - 86	2e-08	RING-like zinc finger
zf-C3HC4	PF00097	59 - 99	2.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	59 - 97	2.4e-07	RING-type zinc-finger
zf-RING_5	PF14634	59 - 100	5.3e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18760 AT1G18770 AT1G18780 AT1G21960 AT2G29840 AT3G13228
fragaria_vesca	FvH4_2g27040
malus_domestica	MD08G1162100.v1.1
prunus_persica	Prupe.1G495200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295911
rosa_laevigata	RLG00000011757
rosa_multiflora	Rmu_sc0003139.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172060
rosa_rugosa	Rorug06G0255000 Rorug06G0255000
rosa_samantha	Rh6AG368800 Rh6BG376500 Rh6CG382700 Rh6DG369300
rosa_wichuraiana	Rw6G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	304
AhlI	ACTAGT	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	202, 234
BauI	CACGAG	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	266
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	4 cut(s)	23, 67, 86, 284
Bst6I	CTCTTC	2 cut(s)	186, 205
BstC8I	GCNNGC	3 cut(s)	102, 106, 110
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	59
Cac8I	GCNNGC	3 cut(s)	102, 106, 110
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	3 cut(s)	18, 112, 131
CviKI_1	RGCY	3 cut(s)	18, 112, 131
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	186, 205
EarI	CTCTTC	2 cut(s)	186, 205
Eco31I	GGTCTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	239
FaiI	YATR	6 cut(s)	10, 29, 142, 179, 237, 313
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	4 cut(s)	23, 67, 86, 284
HpyCH4V	TGCA	2 cut(s)	74, 177
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	1 cut(s)	78
LpnPI	CCDG	4 cut(s)	57, 118, 145, 150
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	86, 217
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	148, 203, 219, 222
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	3 cut(s)	46, 48, 302
MslI	CAYNNNNRTG	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	316
Sau3AI	GATC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	2 cut(s)	114, 229
SmiMI	CAYNNNNRTG	1 cut(s)	316
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	4 cut(s)	23, 67, 86, 284
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.